BAC Information

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BAC

Clone NameB6Ng01-097P24
Chromosome19 (Build37)
Map Location 23,041,224 - 23,213,612
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneEG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097P24.bB6Ng01-097P24.g
ACCDH908219DH908220
length9391,073
definitionDH908219|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P24, 5' end.DH908220|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,041,224 - 23,042,156)(23,212,564 - 23,213,612)
sequence
gaattccacagtcactcagcaaggagcttggagacagggaaagggggaaa
taagggatgttgagacaatccacctgctatattaccaccttaactcacag
gtttgaacagcagctgcctatgtatcctcagccttcactagggagactga
gatacaactgtcctgataggaattcctaaaacaaaacaatgaactactaa
ggttggattgttgaggttctttccaaaaccaataaataaatggcaattta
tatataaacctgcaaataaatgactacacacacacacacacatacactag
caagaacatagcactgagatataaaaagaattgaattctcttccctcttc
cccccagaacacccctcaacatacccataacatacctaggtttgggacat
cctgctccctaagtcactatattagaatagatttctgaacagctcaaagc
taaagttatgctaataatcaatgactatacaccaggatggtcctaaagag
ctaaagattatgtcacttggacccaggtggggcagacttatgaacctcat
gccttttcttggaatcctggggcaatacaatgttaggaacagacgagagt
tggacatcttctaatttagtgtttctcaacatttaatcagccatattctg
ttttgtaacctctattctgttccttgtaatctttcaactgaatcaagttt
ttaaaactcaatttactttaaaaaaaaatatatgtcatggcctaagtttg
aaaattactatggttttggtgtaaatagaagacagtcacaaaagaaacaa
aaaggcgaacaccgcactattatgaagttcttggcaggtgcgtaagtctg
tctcaacttttactggaaagtggggtttgtgaggggaggagttgagcaac
attatccttctatctgactgtgtcttcctgctgaagtca
gaattcactctgtagaccaggctggcctcgaactcagaaatccccctgcc
tctgcctcccaagtgttgggattaaaggtgtgcaccaccactgtccagca
cattctgataatcttttttttaaacatttacctatttattttatgtatat
gagtacactaaagccatacagatggttatgagccaccatgtggtttgctg
ggatttgaactcaggacctctggaagagcagtcagtgctcttaaccactg
agccatctctccagcccacattctgataatcttaattttagaaaagaatt
cactggtgctggctatgatggtgcagaccagaagtcccagtactcaggag
actgaggcacgatggaacatttgaggcatttgaggaggctacagagtgag
atcctgtctcaaaaaaaaaaaaaaaaagaaagaaagaaaaagaaaagaaa
aagaaaaagaaaagaaaaggaaaaaagaaaagcataaaaacatgaaggaa
aaaaagaaagaaaaggaggaaagggaaggattggttctgcctaattttga
tttttttttttaccccctaggataaagtctgtccctaggaatttgcacct
ctgcctgcctccctagggcacagcatagatgggatcagttgaagagcctc
atggtcaaaggcctacacagcctcccacacttgtatttccactggtatta
gtttcactcatgaagtctcctcaggcctcggcctgaaaggctaccaaaga
ttaagggcaggttattctctgagaaaggagcctctatcttcccttaaaga
ctctgagtttgaatacactaacctcagggttttttaaatgcaaactttta
acttcccttacatcctagctgcctttctttctaggtgcccttttagcttt
cataggatcccgactacactctctcaataacttccccaatttcagttata
aagaaacaccaagaaaagcagatctcatcccatggtgaatttcttcttta
tgggaatctgcaagcattagtttggttgtagaagttcccttcaaggtcgg
gcaattcttgacattgtaccccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23041224_23042156
seq2: B6Ng01-097P24.b_47_985

seq1  GAATTCCACAGTCACTCAGCAAGGAGCTTGGAGACAGGGAAAGGGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTCACTCAGCAAGGAGCTTGGAGACAGGGAAAGGGGGAAA  50

seq1  TAAGGGATGTTGAGACAATCCACCTGCTATATTACCACCTTAACTCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGATGTTGAGACAATCCACCTGCTATATTACCACCTTAACTCACAG  100

seq1  GTTTGAACAGCAGCTGCCTATGTATCCTCAGCCTTCACTAGGGAGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACAGCAGCTGCCTATGTATCCTCAGCCTTCACTAGGGAGACTGA  150

seq1  GATACAACTGTCCTGATAGGAATTCCTAAAACAAAACAATGAACTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAACTGTCCTGATAGGAATTCCTAAAACAAAACAATGAACTACTAA  200

seq1  GGTTGGATTGTTGAGGTTCTTTCCAAAACCAATAAATAAATGGCAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGATTGTTGAGGTTCTTTCCAAAACCAATAAATAAATGGCAATTTA  250

seq1  TATATAAACCTGCAAATAAATGACTACACACACACACACACATACACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACCTGCAAATAAATGACTACACACACACACACACATACACTAG  300

seq1  CAAGAACATAGCACTGAGATATAAAAAGAATTGAATTCTCTTCCCTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACATAGCACTGAGATATAAAAAGAATTGAATTCTCTTCCCTCTTC  350

seq1  CCCCCAGAACACCCCTCAACATACCCATAACATACCTAGGTTTGGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAACACCCCTCAACATACCCATAACATACCTAGGTTTGGGACAT  400

seq1  CCTGCTCCCTAAGTCACTATATTAGAATAGATTTCTGAACAGCTCAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCTAAGTCACTATATTAGAATAGATTTCTGAACAGCTCAAAGC  450

seq1  TAAAGTTATGCTAATAATCAATGACTATACACCAGGATGGTCCTAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTATGCTAATAATCAATGACTATACACCAGGATGGTCCTAAAGAG  500

seq1  CTAAAGATTATGTCACTTGGACCCAGGTGGGGCAGACTTATGAACCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATTATGTCACTTGGACCCAGGTGGGGCAGACTTATGAACCTCAT  550

seq1  GCCTTTTCTTGGAATCCTGGGGCAATACAATGTTAGGAACAGACGAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCTTGGAATCCTGGGGCAATACAATGTTAGGAACAGACGAGAGT  600

seq1  TGGACATCTTCTAATTTAGTGTTTCTCAACATTTAATCAGCCATATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATCTTCTAATTTAGTGTTTCTCAACATTTAATCAGCCATATTCTG  650

seq1  TTTTGTAACCTCTATTCTGTTCCTTGTAATCTTTCAACTGAATCAAG-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTGTAACCTCTATTCTGTTCCTTGTAATCTTTCAACTGAATCAAGTTT  700

seq1  TTAAAACTCAATTTACTTTAAAAAAAAATATATGTCATGGCCTAAG-TTG  748
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAAAACTCAATTTACTTTAAAAAAAAATATATGTCATGGCCTAAGTTTG  750

seq1  AAAATTACTATGG-TTTGGTGTAAATAGAAGACAGTCACAAAAGAAAC-A  796
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  AAAATTACTATGGTTTTGGTGTAAATAGAAGACAGTCACAAAAGAAACAA  800

seq1  AAAGGCGAACACCGCACTATTATGAAGTTCTTGGCAGGTGCGTAAGTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGAACACCGCACTATTATGAAGTTCTTGGCAGGTGCGTAAGTCTG  850

seq1  TCTCAAC-TTTACTGGAAAGTGGGGTTTGTGA-GGGAGGAGTTGAGCAAA  894
      ||||||| |||||||||||||||||||||||| |||||||||||||| ||
seq2  TCTCAACTTTTACTGGAAAGTGGGGTTTGTGAGGGGAGGAGTTGAGC-AA  899

seq1  CATTATCC-TCTAACTGACTGTGTCTTCCTGCTGAAGTCA  933
      |||||||| |||| ||||||||||||||||||||||||||
seq2  CATTATCCTTCTATCTGACTGTGTCTTCCTGCTGAAGTCA  939

seq1: chr19_23212564_23213612
seq2: B6Ng01-097P24.g_68_1140 (reverse)

seq1  CGGGGTACAATGGC-AGAATTG-CCGACTTTGAAGGGACTTTCTACAAC-  47
      |||||||||||| | ||||||| ||||| |||||||||  ||||||||| 
seq2  CGGGGTACAATGTCAAGAATTGCCCGACCTTGAAGGGAACTTCTACAACC  50

seq1  -AACT-ATGCTTGCAGAT--CCATAA--GAGAAATTCA-CAT-GGATGAG  89
       |||| ||||||||||||  ||||||   ||||||||| ||| |||||||
seq2  AAACTAATGCTTGCAGATTCCCATAAAGAAGAAATTCACCATGGGATGAG  100

seq1  ATCTGC-TTTCTTGGTG-TTCTTTATAACTG-AATTGGG--AG-TATTGA  133
      |||||| |||||||||| ||||||||||||| |||||||  || ||||||
seq2  ATCTGCTTTTCTTGGTGTTTCTTTATAACTGAAATTGGGGAAGTTATTGA  150

seq1  GAGAGTGTAGTCGGGATCCTATG-AAGCT-AAAGGGCA-CTAGAAAG-AA  179
      ||||||||||||||||||||||| ||||| |||||||| |||||||| ||
seq2  GAGAGTGTAGTCGGGATCCTATGAAAGCTAAAAGGGCACCTAGAAAGAAA  200

seq1  GGCAGCTA-GATGTAAGGGAAGTT-AAAGTTTGCATTTAAAAAACCCTGA  227
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  GGCAGCTAGGATGTAAGGGAAGTTAAAAGTTTGCATTTAAAAAACCCTGA  250

seq1  GGTTAGTGTATTCAAACTCAGAGTCTTTAAGGGAAGATAGAGGCTCC-TT  276
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTTAGTGTATTCAAACTCAGAGTCTTTAAGGGAAGATAGAGGCTCCTTT  300

seq1  CTCAGAGAATAACCTGCCCTTAATCTTTGGTAGCCTTTCAGGCCGAGGCC  326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAATAACCTGCCCTTAATCTTTGGTAGCCTTTCAGGCCGAGGCC  350

seq1  TGAGGAGACTTCATGAGTGAAACTAATACCAGTGGAAATACAAGTGTGGG  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACTTCATGAGTGAAACTAATACCAGTGGAAATACAAGTGTGGG  400

seq1  AGGCTGTGTAGGCCTTTGACCATGAGGCTCTTCAACTGATCCCATCTATG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGTAGGCCTTTGACCATGAGGCTCTTCAACTGATCCCATCTATG  450

seq1  CTGTGCCCTAGGGAGGCAGGCAGAGGTGCAAATTCCTAGGGACAGACTTT  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCTAGGGAGGCAGGCAGAGGTGCAAATTCCTAGGGACAGACTTT  500

seq1  ATCCTAGGGGGTAAAAAAAAAAATCAAAATTAGGCAGAACCAATCCTTCC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGGGGTAAAAAAAAAAATCAAAATTAGGCAGAACCAATCCTTCC  550

seq1  CTTTCCTCCTTTTCTTTCTTTTTTTCCTTCATGTTTTTATGCTTTTCTTT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCTTTTCTTTCTTTTTTTCCTTCATGTTTTTATGCTTTTCTTT  600

seq1  TTTCCTTTTCTTTTCTTTTTCTTTTTCTTTTCTTTTTCTTTCTTTCTTTT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTCTTTTCTTTTTCTTTTTCTTTTCTTTTTCTTTCTTTCTTTT  650

seq1  TTTTTTTTTTTTTGAGACAGGATCTCACTCTGTAGCCTCCTCAAATGCCT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGAGACAGGATCTCACTCTGTAGCCTCCTCAAATGCCT  700

seq1  CAAATGTTCCATCGTGCCTCAGTCTCCTGAGTACTGGGACTTCTGGTCTG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTCCATCGTGCCTCAGTCTCCTGAGTACTGGGACTTCTGGTCTG  750

seq1  CACCATCATAGCCAGCACCAGTGAATTCTTTTCTAAAATTAAGATTATCA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATAGCCAGCACCAGTGAATTCTTTTCTAAAATTAAGATTATCA  800

seq1  GAATGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTT  850

seq1  CCAGAGGTCCTGAGTTCAAATCCCAGCAAACCACATGGTGGCTCATAACC  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTCCTGAGTTCAAATCCCAGCAAACCACATGGTGGCTCATAACC  900

seq1  ATCTGTATGGCTTTAGTGTACTCATATACATAAAATAAATAGGTAAATGT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATGGCTTTAGTGTACTCATATACATAAAATAAATAGGTAAATGT  950

seq1  TTAAAAAAAAGATTATCAGAATGTGCTGGACAGTGGTGGTGCACACCTTT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAGATTATCAGAATGTGCTGGACAGTGGTGGTGCACACCTTT  1000

seq1  AATCCCAACACTTGGGAGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAACACTTGGGAGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCC  1050

seq1  AGCCTGGTCTACAGAGTGAATTC  1049
      |||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTGAATTC  1073