BAC Information

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BAC

Clone NameB6Ng01-099B13
Chromosome19 (Build37)
Map Location 49,683,596 - 49,868,150
singlet/doubletdoublet
Overlap geneLOC629448
Upstream geneSorcs3, LOC100042896
Downstream geneSiah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099B13.bB6Ng01-099B13.g
ACCDH908989DH908990
length1,160897
definitionDH908989|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B13, 5' end.DH908990|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,683,596 - 49,684,608)(49,867,205 - 49,868,150)
sequence
gaattccaagattgtgaactagaaaaaccttgttgtggtgtggctcagca
ctagtctttaatctgagagctttctgtaaacaagagcaaaatgaagttaa
caataggacaagaggtggaacaggtaaggagttgacaaggaatgaaaata
aggaagtggaaaggaggggcattgagttgaagggtctttaggacagcttg
gagaaggagaaagcttttccttctgggatgtcagtggagtagcaaggtca
gctgggtgttttctctacctctctgagctaacaggttttcaccccagcat
ctgactgctgtgttttcattggtaaaatcaaaaggcaggaatttgtgttt
ttaaaacaaaagagaaaatgtaaatttttggcttaccattctagaaagga
tgcattgcaccatgacaagggaggcttggctgtataggtgtgaagctgac
ctgtcactttgcatcagtcataagaaagaaaatggtgaggtaccataaat
ccttacaccccacaaccaactaccttattcccccagaatgcttcccctgc
taaagtttcttaatcttcccaaatagcatttccaagtggggacaaaatgt
tcaaaaccatgaatctatgggggacatttcctataaacaataacaaccag
agtctagatcagtacaaaatgtttcctgtctcccaccctaagcaaatgtt
gcatagcatcacctgatgaaactgggataaaagatctgaagtggagatga
ttagtgagaactcaatgtgagggttgagcataacaatttgtgaaaaacat
cttccgtgatcagagcctcctttacaaaacaacaagcattattaataaga
tatgagatttattgtgactttacacataatatcaataattatgttggcac
ataggtacaatcccagatcttggggtgaaagccaaataattatgaattaa
tggttatcatggactatgtaggtaactccaggccagtctgtagtacatag
tgagactctgtctcagaaaggtgagcgactttgcatatagcttactggta
gaatgtggctttaatcagcacggggccttggaccttgatccccaaactgc
caataacaaatacatataccaaacaccttaccggacataaatatatgtat
aattttaaaa
gaattctctgcacacaaatggcttgctagttcattgagctgtcctaatag
aaaccagtcagtgtaagtttaaatgttcccctctatctatcccatttaac
ttatccctatttcctggggtgtaaatcattgtccctacttggctttaaat
ttgattaaacagaatatatatatatatatatatatatatatatatatata
tatatacatacatacatatatatatgtgtgtgtgtgcgcgcgcacacgtg
taatttaaatatattaatataatttaaatatatattgcctcatcataagg
actgaaagcaaactcgaagtacccatcagctttaacaggaaaaataacaa
cacagacatctaaccaattcagggggcctggtgagatgatatgtagttgt
ggaaagaaatgagaaagagcaaaataagatcttttaaactgtaagtgcat
caaattaaaatatattactcactcatcccaacagggctttctgttgagag
tggtatagtctctttgtgctccacacttaagaatatttctctgggaacat
ggagttttagtatcttttctcctgttaatagaccattactgaatattgca
gtgatactagaacctaataatagagtgttttccatttgtaatacactatc
cattttgtcagacttatagaacaaccaacattgatgttggtctggcattt
attcctacttacatgatcttttttctcagtctgtgcctgaacattagtat
tcttataatggatgacagagtttaagacttgcatcttctgtgttatataa
gaatgctataagaattctaatattatacatatatgcatgctgctcattat
gcatgagcgtcagctaagctagcactgatactgtgttcatgatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49683596_49684608
seq2: B6Ng01-099B13.b_195_1206

seq1  TAAGGAAGTGGAAAGGAGGGGCATTGAGTTGAAGGGTCTTTAGGACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGTGGAAAGGAGGGGCATTGAGTTGAAGGGTCTTTAGGACAGCT  50

seq1  TGGAGAAGGAGAAAGCTTTTCCTTCTGGGATGTCAGTGGAGTAGCAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGGAGAAAGCTTTTCCTTCTGGGATGTCAGTGGAGTAGCAAGGT  100

seq1  CAGCTGGGTGTTTTCTCTACCTCTCTGAGCTAACAGGTTTTCACCCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGTGTTTTCTCTACCTCTCTGAGCTAACAGGTTTTCACCCCAGC  150

seq1  ATCTGACTGCTGTGTTTTCATTGGTAAAATCAAAAGGCAGGAATTTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTGCTGTGTTTTCATTGGTAAAATCAAAAGGCAGGAATTTGTGT  200

seq1  TTTTAAAACAAAAGAGAAAATGTAAATTTTTGGCTTACCATTCTAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACAAAAGAGAAAATGTAAATTTTTGGCTTACCATTCTAGAAAG  250

seq1  GATGCATTGCACCATGACAAGGGAGGCTTGGCTGTATAGGTGTGAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTGCACCATGACAAGGGAGGCTTGGCTGTATAGGTGTGAAGCTG  300

seq1  ACCTGTCACTTTGCATCAGTCATAAGAAAGAAAATGGTGAGGTACCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCACTTTGCATCAGTCATAAGAAAGAAAATGGTGAGGTACCATAA  350

seq1  ATCCTTACACCCCACAACCAACTACCTTATTCCCCCAGAATGCTTCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTACACCCCACAACCAACTACCTTATTCCCCCAGAATGCTTCCCCT  400

seq1  GCTAAAGTTTCTTAATCTTCCCAAATAGCATTTCCAAGTGGGGACAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGTTTCTTAATCTTCCCAAATAGCATTTCCAAGTGGGGACAAAAT  450

seq1  GTTCAAAACCATGAATCTATGGGGGACATTTCCTATAAACAATAACAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAACCATGAATCTATGGGGGACATTTCCTATAAACAATAACAACC  500

seq1  AGAGTCTAGATCAGTACAAAATGTTTCCTGTCTCCCACCCTAAGCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTAGATCAGTACAAAATGTTTCCTGTCTCCCACCCTAAGCAAATG  550

seq1  TTGCATAGCATCACCTGATGAAACTGGGATAAAAGATCTGAAGTGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGCATCACCTGATGAAACTGGGATAAAAGATCTGAAGTGGAGAT  600

seq1  GATTAGTGAGAACTCAATGTGAGGGTTGAGCATAACAATTTGTGAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTGAGAACTCAATGTGAGGGTTGAGCATAACAATTTGTGAAAAAC  650

seq1  ATCTTCCGTGATCAGAGCCTCCTTTACAAAACAACAAGCATTATTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCGTGATCAGAGCCTCCTTTACAAAACAACAAGCATTATTAATAA  700

seq1  GATATGAGATTTATTGTGACTTTACACATAATATCAATAATTATGTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGATTTATTGTGACTTTACACATAATATCAATAATTATGTTGGC  750

seq1  ACATAGGTACAATCCCAGATCTTGGGGTGAAAGCCAAATAATTATGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTACAATCCCAGATCTTGGGGTGAAAGCCAAATAATTATGAATT  800

seq1  AATGGTTATCATGGACTATGTAGGTAACTCCAGGCCAGTCTGTAGTACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTATCATGGACTATGTAGGTAACTCCAGGCCAGTCTGTAGTACAT  850

seq1  AGTGAGACTCTGTCTCAGAAAAGGTGAGCGACTTTGCATATAGCTTACTG  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTGAGACTCTGTCTCAG-AAAGGTGAGCGACTTTGCATATAGCTTACTG  899

seq1  GTAGAAATGTTGCTTT-ATCAGCACGGGGCCTT-GACCTTGATCCCCAAA  948
      |||| ||||| ||||| |||||||||||||||| ||||||||||||||||
seq2  GTAG-AATGTGGCTTTAATCAGCACGGGGCCTTGGACCTTGATCCCCAAA  948

seq1  CTGCAAATAAACAAATACATATA-CAAACACAT--ACAGACATAAATAAA  995
      |||| ||| |||||||||||||| ||||||| |   | |||||||||| |
seq2  CTGCCAAT-AACAAATACATATACCAAACACCTTACCGGACATAAATATA  997

seq1  TAGTAATAAATTTTAAAA  1013
      | |||   ||||||||||
seq2  T-GTA--TAATTTTAAAA  1012

seq1: chr19_49867205_49868150
seq2: B6Ng01-099B13.g_68_964 (reverse)

seq1  AATGATCATGAAAACAACAGATAATTCAGTTGCTAGCTTTAGCTGACGCT  50
      |||||||||||| |||  |      |||| ||||||| ||||||||||| 
seq2  AATGATCATGAACACAGTA------TCAG-TGCTAGC-TTAGCTGACGC-  41

seq1  TCATGCATTTAAATGAGCAAGCCATTGCATATAATGGTATAAATATTAGA  100
      ||||||||   ||||||| |||   ||||||||   |||| |||||||||
seq2  TCATGCAT---AATGAGC-AGC--ATGCATATA--TGTAT-AATATTAGA  82

seq1  ATTTTTCTTTATTAGCATTTTCCTTTTTATATAAACACAGAAGATGCAAG  150
      ||| ||      |||||      || |||||| |||||||||||||||||
seq2  ATTCTT-----ATAGCA------TTCTTATAT-AACACAGAAGATGCAAG  120

seq1  TCTTTTAAAACTCTTGTCATCCATTTTAATAAGAATACTTAATGTTTTCA  200
      ||||   |||||| |||||||||||   |||||||||| |||||  ||||
seq2  TCTT---AAACTC-TGTCATCCATT---ATAAGAATAC-TAATG--TTCA  160

seq1  GGCACAGACTTGAGAAAAAAGATCATGTAAGTAGGAATAAATGCCAGACC  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAC-TGAGAAAAAAGATCATGTAAGTAGGAATAAATGCCAGACC  209

seq1  AAACATCAATGTTGGTTTGTTTCTATAAGTCTGACAAAATGGATAGTGTA  300
       ||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  -AACATCAATGTTGGTT--GTTCTATAAGTCTGACAAAATGGATAGTGTA  256

seq1  TTTACAAATGGAAAACACTCTATTATTAGGTTCTAGTATCACTGCAATAT  350
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -TTACAAATGGAAAACACTCTATTATTAGGTTCTAGTATCACTGCAATA-  304

seq1  TTCAGTAATGGTCTATTTAACAGGAGAAAAGATACTAAAACCTCCATGTT  400
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TTCAGTAATGGTCTA-TTAACAGGAGAAAAGATACTAAAA-CTCCATGTT  352

seq1  CCCAGAGAAATATTCTTAAGTGTGGGAGCACAAAGAGACTATACCACTCT  450
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCAGAGAAATATTCTTAAGTGT-GGAGCACAAAGAGACTATACCACTCT  401

seq1  CAACAGAAAGCCCTGTTGGGATGAGTGAGTAATATATTTTAATTTGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAAAGCCCTGTTGGGATGAGTGAGTAATATATTTTAATTTGATGC  451

seq1  ACTTACAGTTTAAAAGATCTTATTTTGCTCTTTCTCATTTCTTTCCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGTTTAAAAGATCTTATTTTGCTCTTTCTCATTTCTTTCCACAA  501

seq1  CTACATATCATCTCACCAGGCCCCCTGAATTGGTTAGATGTCTGTGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATCATCTCACCAGGCCCCCTGAATTGGTTAGATGTCTGTGTTGT  551

seq1  TATTTTTCCTGTTAAAGCTGATGGGTACTTCGAGTTTGCTTTCAGTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTGTTAAAGCTGATGGGTACTTCGAGTTTGCTTTCAGTCCTT  601

seq1  ATGATGAGGCAATATATATTTAAATTATATTAATATATTTAAATTACACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGGCAATATATATTTAAATTATATTAATATATTTAAATTACACG  651

seq1  TGTGCGCGCGCACACACACACATATATATATGTATGTATGTATATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCGCGCACACACACACATATATATATGTATGTATGTATATATATA  701

seq1  TATATATATATATATATATATATATATATATATTCTGTTTAATCAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATTCTGTTTAATCAAATTT  751

seq1  AAAGCCAAGTAGGGACAATGATTTACACCCCAGGAAATAGGGATAAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAGTAGGGACAATGATTTACACCCCAGGAAATAGGGATAAGTTA  801

seq1  AATGGGATAGATAGAGGGGAACATTTAAACTTACACTGACTGGTTTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATAGATAGAGGGGAACATTTAAACTTACACTGACTGGTTTCTAT  851

seq1  TAGGACAGCTCAATGAACTAGCAAGCCATTTGTGTGCAGAGAATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGCTCAATGAACTAGCAAGCCATTTGTGTGCAGAGAATTC  897