BAC Information

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BAC

Clone NameB6Ng01-099K11
Chromosome19 (Build37)18 (Build37)
Map Location 10,753,116 - 10,753,95459,769,053 - 59,769,700
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5
Downstream gene2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099K11.bB6Ng01-099K11.g
ACCDH909388DH909389
length8531,111
definitionDH909388|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K11, 5' end.DH909389|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,753,116 - 10,753,954)(59,769,053 - 59,769,700)
sequence
gaattctcccgaatctaaggagaaaaacgtaataaagtcagatataatag
aataattatgcataccaaggtcaactgaaaagcagtcactcacaaataaa
atctatatagcccttgtctagggctaatgttagaataaatggaacaactg
ttttttacaaagagctgccttgggctactgagatgtctccatcctatcct
acttcaggcaaccccttatttcaaataatcagacccctggagggatgtgt
ctcctgtttctcagggtcccagacgccatccttttctataggagctgcta
tgggtttctgacatgtctccatctctgcctactggaagcaatccctgtca
ttgtatgctgtccccagaaccctattacaactcccctgataggaccctga
gttgtctgcccttcaaaactaacgaataaatagtcttctaagcattttgt
caaaaaaacacctctgggagcctttggcctgggatacatatgtttacctc
cttaaactggcactacaccataaaatacagactaatactcttctcccctc
aggagtccaatattcttcatggtgtccctgttgcacactctgggatgaag
tgtcttctcatttgcagggagcaacttatgagccaagaacagagtgtgaa
atccctggtgcctgcatcataataccccagctgctaacattcccaagatc
aggaattttacattcccaagctgaaaatccctgctctgacttctctggat
atgagtccaacttggcatcttggcatccttccttcctggcactgacaggt
catagctgactcaagactgcccccaagtgctaagataatatggaatcatg
ccc
gaattctccgtaacagaaacctgaagtagctggtctctatgcatgcacag
ccagataacaaacagcggagcccggaaaggtggcttattagttaagtgca
ctttccattcttgaagagaatgtcatttcaggtgactcacagtcatctgt
aattccagctccaggaaatcctatgccctctaagacagcaagtgaataca
ttctaccgatcaggtagctttccccattttatcctgccgggggtaccctc
ccgggccagggaacggactcgtccttaattttaataaatcttcccacatc
acttaatccttgggcagatagggagggatccctctgtgagtttgaagccc
tatctatgtatctatttccaggatagacagacaggcctggagagagaaag
agagagagagagagagagagagagagagagagagagagagagagagagaa
agataaacataattactttcatcaaggtaggaggacccacccactgtggg
tgataccattccctatgcaaaagatcctgaactaagaatgaagaaaacaa
gttgagcacaagaatgcatacatgcattcattctctccgcttttgactat
ggatgtcattagctttctaaggtcctgccacccaaactttcctgaagtga
tggactttctgctcggaactgggagagaaaataaacccttttctccgtta
aattgtttttgtcctagtatttttattgtggcaacaataagtgaaattaa
gatagatagttctaacaatcagttttcacacaggtgacggcaattccttt
acttctctatgatcttactctggagatatcatcggaagtctcttcattat
gttatgcagaaattattctagataactataatagggattcattatattca
ctcaattcataattccaccccaccagtaagattagtttaatatctattca
gattaacatgctggaatacattcatggaatggtggtaaggccgtttacgc
ctttggtaaatggtcatgaagacagcgctcttctggaaagaaaaattggg
ttattccaagcttccaagttgcttccacctttagggaaaaaaaaaaaggg
aaggagggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10753116_10753954
seq2: B6Ng01-099K11.b_62_898 (reverse)

seq1  GGGCATGATGCCATATTATCTTACCACAAGGGGGCAGTCTTGAGTCAGCT  50
      ||||||||| ||||||||||||| |||  |||||||||||||||||||||
seq2  GGGCATGATTCCATATTATCTTAGCACTTGGGGGCAGTCTTGAGTCAGCT  50

seq1  CTGACCTGCCAGTGCCAGGCTGGAAGGAAGCCAAGATGCCAAGTTGGCCA  100
       ||||||| ||||||||||  ||||||| |||||||||||||||||| | 
seq2  ATGACCTGTCAGTGCCAGGAAGGAAGGATGCCAAGATGCCAAGTTGGACT  100

seq1  CATTTTTGAGAGAAGTCAGAGCCTGGATTTTTTTTTTTTTTTATGTAAAA  150
      || | |  ||||||||||||||  ||| ||||    ||    ||||||||
seq2  CA-TATCCAGAGAAGTCAGAGCAGGGA-TTTTCAGCTTGGGAATGTAAAA  148

seq1  TTCCTGCTCTT-TAAATGTTAGCAGCTGGGGTATTATGATGCATGCACTT  199
      |||||| ||||   ||||||||||||||||||||||||||||| ||||  
seq2  TTCCTGATCTTGGGAATGTTAGCAGCTGGGGTATTATGATGCAGGCACCA  198

seq1  TGGTTTTCACACACTGTTCCTGGCTCCTAAGTTGCTCCCTGCAAATGAGA  249
       || |||||||| |||||| |||||| |||||||||||||||||||||||
seq2  GGGATTTCACACTCTGTTCTTGGCTCATAAGTTGCTCCCTGCAAATGAGA  248

seq1  AGACACTTCATCCCAGAGTGTGCAACAGGGACACCATGAAGAATCTTGGA  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGACACTTCATCCCAGAGTGTGCAACAGGGACACCATGAAGAATATTGGA  298

seq1  CTCCTGTGGGGAGAAGAGTATTAGTCTGTATTTTATGCTGTAGTGCCAGT  349
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCCTGAGGGGAGAAGAGTATTAGTCTGTATTTTATGGTGTAGTGCCAGT  348

seq1  TTAAGGAGGTAAACATATGTATCCCAGGCCAAAGGCTCCCAGAGGTGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGGTAAACATATGTATCCCAGGCCAAAGGCTCCCAGAGGTGTTT  398

seq1  TTCTGACAAAATGCTTAGAAGAATATTTATTTGCTCGTCTGGATGGGCAG  449
      || ||||||||||||||||||| |||||||| | | || | || ||||||
seq2  TTTTGACAAAATGCTTAGAAGACTATTTATTCGTTAGTTTTGAAGGGCAG  448

seq1  ACAAATCAGGGTCCTATCAGGGGAGCTGTAATAGGGTGCTGGGGACAGCA  499
      |||| |||||||||||||||||||| ||||||||||| ||||||||||||
seq2  ACAACTCAGGGTCCTATCAGGGGAGTTGTAATAGGGTTCTGGGGACAGCA  498

seq1  TACAATGACAGGGACTGCCTGCAGTAGGCAGAGATGGAGACATCTCAGAA  549
      |||||||||||||| ||| | |||||||||||||||||||||| ||||||
seq2  TACAATGACAGGGATTGCTTCCAGTAGGCAGAGATGGAGACATGTCAGAA  548

seq1  ACCCATAGCAGCTCCTTGTAGAAAAGGATGGCGTCTGGGACCCTGAGAAA  599
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  ACCCATAGCAGCTCC-TATAGAAAAGGATGGCGTCTGGGACCCTGAGAAA  597

seq1  CAGGAGACACATCCCTCCAGGGGACCTGCTATCTGAAATAAGGGACTGCC  649
      ||||||||||||||||||||||| |    ||| |||||||||||  ||||
seq2  CAGGAGACACATCCCTCCAGGGGTCTGATTATTTGAAATAAGGGGTTGCC  647

seq1  TGAAGTAGGCTAGGATGGAGACATCTCAGTAGCCCATGGCAGCTCTTTGT  699
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  TGAAGTAGGATAGGATGGAGACATCTCAGTAGCCCAAGGCAGCTCTTTGT  697

seq1  AAAAAACAGTTGTTCCATTTCTTCTAACATTAGCCCTAGACAATGGCTAT  749
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  AAAAAACAGTTGTTCCATTTATTCTAACATTAGCCCTAGACAAGGGCTAT  747

seq1  ATAGATTTTATTTGTGTGTGACTGCTTTTCAGTTGACCTTGGTATGCATA  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAGATTTTATTTGTGAGTGACTGCTTTTCAGTTGACCTTGGTATGCATA  797

seq1  ATTATTCTATTATATCTGACTTTCTTACTTCTTTCTCCTT  839
      ||||||||||||||||||||||| |||| | |||||||||
seq2  ATTATTCTATTATATCTGACTTTATTACGTTTTTCTCCTT  837

seq1: chr18_59769053_59769700
seq2: B6Ng01-099K11.g_527_1178

seq1  TAATTACTTTCATCAAGGTAGGAGGACCCACCCACTGTGGGTGATACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTTTCATCAAGGTAGGAGGACCCACCCACTGTGGGTGATACCAT  50

seq1  TCCCTATGCAAAAGATCCTGAACTAAGAATGAAGAAAACAAGTTGAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGCAAAAGATCCTGAACTAAGAATGAAGAAAACAAGTTGAGCAC  100

seq1  AAGAATGCATACATGCATTCATTCTCTCCGCTTTTGACTATGGATGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCATACATGCATTCATTCTCTCCGCTTTTGACTATGGATGTCAT  150

seq1  TAGCTTTCTAAGGTCCTGCCACCCAAACTTTCCTGAAGTGATGGAC-TTC  199
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGCTTTCTAAGGTCCTGCCACCCAAACTTTCCTGAAGTGATGGACTTTC  200

seq1  TGCTCGGAACTGGGAGAGAAAATAAACCC-TTTCTCCGTTAAATTGCTTT  248
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TGCTCGGAACTGGGAGAGAAAATAAACCCTTTTCTCCGTTAAATTGTTTT  250

seq1  TGTCCTAGTA-TTTTATTGTGGCAACAATAAGTGAAATTAAGATAGATAG  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGTATTTTTATTGTGGCAACAATAAGTGAAATTAAGATAGATAG  300

seq1  TTCTAACAATCAGTTTTCACACAGGTGACGGCAA-TCCTTTACTTCTCTA  346
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTAACAATCAGTTTTCACACAGGTGACGGCAATTCCTTTACTTCTCTA  350

seq1  TGATCTTACTCTGGAGATATCATCGGGAAGTCTCTTCATTATGTTATGCA  396
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGATCTTACTCTGGAGATATCATC-GGAAGTCTCTTCATTATGTTATGCA  399

seq1  GAAATTATTCTAGATAACTATAATAGTGATTTCATTATATTCACTCAATT  446
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  GAAATTATTCTAGATAACTATAATAGGGA-TTCATTATATTCACTCAATT  448

seq1  CATAATTTCACCCCA-CAGTAAGATTAGTTT-ATATCTATTCAGAATAAA  494
      ||||||| ||||||| ||||||||||||||| |||||||||||| || ||
seq2  CATAATTCCACCCCACCAGTAAGATTAGTTTAATATCTATTCAG-ATTAA  497

seq1  CATGCTGAAATACATTCATGG-ATGGT-GTAAGGCCGTTAACGCCTTTG-  541
      ||||||| ||||||||||||| ||||| ||||||||||| ||||||||| 
seq2  CATGCTGGAATACATTCATGGAATGGTGGTAAGGCCGTTTACGCCTTTGG  547

seq1  -AGAAGGTCATGAGAACAGCGCTCTCCTGGAGAGAAAAATTGGGTTTATC  590
       | | ||||||||  |||||||||| ||||| ||||||||||||||  ||
seq2  TAAATGGTCATGAAGACAGCGCTCTTCTGGAAAGAAAAATTGGGTTATTC  597

seq1  AAAGTTTCCAAGTTGCTTCCACCTTTAAGGGGAAAAAAAAAAAAGGAAGG  640
       ||| ||||||||||||||||||||||  |||||||||||||| ||||||
seq2  CAAGCTTCCAAGTTGCTTCCACCTTTA--GGGAAAAAAAAAAAGGGAAGG  645

seq1  AAGGGAAC  648
       |||||||
seq2  -AGGGAAC  652