BAC Information

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BAC

Clone NameB6Ng01-100J06
Chromosome19 (Build37)
Map Location 51,435,726 - 51,608,731
singlet/doubletdoublet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100J06.bB6Ng01-100J06.g
ACCDH910032DH910033
length1,0251,137
definitionDH910032|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J06, 5' end.DH910033|Mus musculus domesticus DNA, BAC clone: B6Ng01-100J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,435,726 - 51,436,741)(51,607,583 - 51,608,731)
sequence
gaattctttggtatttagagatcagtcatagcaaaagggtagcctgtcta
ttgtaggggcagtcatttcttcacactgcatgaagatgtgtcactgtaat
ttcaattgttaattctgtaccagcagatgggagagtactggcaggattct
tgtattgccaattcattctatggcccatcagctgattttgtaaatattcc
tccttcctcacccaccttaaggcaatctagaattgttcggaggttgtctc
tctatggaattttgtaatgagtatctgacaaccggtacctggaacaaaaa
ttaattacaatctgtttgataatgatcacagttttctctgtaatctctaa
gaaagagcaagctaaagcagacatagagaaagagatgactgagaggtgca
acgccgaattacaaatggtagtaatagaggaaggaaaaaggcttcccaag
agaaaagaattggtggcagttgaaactcagagctctctgcctacaagatg
cctgtcagatcattctgctaaggtcctgccaatgctgatgggcaacatct
aagttccaggaatgactggcatgggttgctgaagcaggatgaaataacaa
agctgctataaaattcagatttttaaaaaattttttttattgttgttgtt
gtttttcctcatagcagaaataactcagaattaaatgtccctttatgaga
aagaaaattggagtgagctaaacttttattacaaaactgaacacaatcaa
ggcatcaggtattaagccaatgttatctaaattaaaagaggtattagtca
taagagctgttttgcatataaaatttttgaaattattccagattattcat
aattaacttaattatttatacaactacagataattcaaaacatatatata
tatatatatatatatatatgcatgcttgatctcatacaggtttgccagcc
tgaggagttagacctcctcattttatgtagaattagaatatattgtaaat
ataaaagtaaaatagtatatataat
gaattcaataaaacagttccactggtctctttagaaagtataaaataacc
gtcagaatttcagacaaagtcttttcaatccccagtgaaatataaccctt
ggaataaatgaaaagtctttcctttgtcatggccgtttgttgttgatgtt
ggagagaaatgagctttctttctagcacccaccacactcagtattctcct
ctccaggaggcctaacctgtaccatacaatctctacatctcaacttatag
tacagtgtgtttttagtttttgaaggaatcttccaggaaaagggtgacaa
catttacttgttgaacacttactttatatgaatcattgtgataactagtg
tagacataccagctgattaaactttataacaaccttataacatcgactga
ggtgcacagaccgcttgcttctgtcctctcctgcagaagtccccctttcc
cctaggatctctctttcccacagcaagcacagtgagacttgcttctgtgg
ctagcctctgcactttccctgagaagctcaataaggcttgcttctgcctt
ttgcctccgcgttgcccctcagaagccctgctcctcctcccctcttgcag
caaacgctgggtgctgtgggggggcggtcattccacctccctagcctccc
caggaggacacaaggagctgccggtatcaatccaaataagacaaatgaca
aaaaaaactcctcaacttcaatgacgccaaggccagagcactcttagata
atcaggtgtagctggcacctatccttgaagaaaggagattagggacccat
gcttaaatcatagtaaaacggtaatcaaagtcacaggcatatatggccgg
ccataaactagttcctgaaggcttgctgcccaggtctggctcgttcaata
aatacttttcatgacacttgcagcggactctgcatgtcctgcgctctcct
gggtttccacggaccggggcatcacagaaacattgtgtggttaatttact
gcatttatatactagtttgtaagactcatggggactaacttccaggaatc
atccctaatctgagtgatataattggaatactatattgaaaaatttcaat
tcctaagctcccccaccttctcacaagcgtgttaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_51435726_51436741
seq2: B6Ng01-100J06.b_44_1068

seq1  GAATTCTTTGGTATTTAGAGATCAGTCATAGCAAAAGGGTAGCCTGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTATTTAGAGATCAGTCATAGCAAAAGGGTAGCCTGTCTA  50

seq1  TTGTAGGGGCAGTCATTTCTTCACACTGCATGAAGATGTGTCACTGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGGGCAGTCATTTCTTCACACTGCATGAAGATGTGTCACTGTAAT  100

seq1  TTCAATTGTTAATTCTGTACCAGCAGATGGGAGAGTACTGGCAGGATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGTTAATTCTGTACCAGCAGATGGGAGAGTACTGGCAGGATTCT  150

seq1  TGTATTGCCAATTCATTCTATGGCCCATCAGCTGATTTTGTAAATATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCCAATTCATTCTATGGCCCATCAGCTGATTTTGTAAATATTCC  200

seq1  TCCTTCCTCACCCACCTTAAGGCAATCTAGAATTGTTCGGAGGTTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCACCCACCTTAAGGCAATCTAGAATTGTTCGGAGGTTGTCTC  250

seq1  TCTATGGAATTTTGTAATGAGTATCTGACAACCGGTACCTGGAACAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGAATTTTGTAATGAGTATCTGACAACCGGTACCTGGAACAAAAA  300

seq1  TTAATTACAATCTGTTTGATAATGATCACAGTTTTCTCTGTAATCTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACAATCTGTTTGATAATGATCACAGTTTTCTCTGTAATCTCTAA  350

seq1  GAAAGAGCAAGCTAAAGCAGACATAGAGAAAGAGATGACTGAGAGGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCAAGCTAAAGCAGACATAGAGAAAGAGATGACTGAGAGGTGCA  400

seq1  ACGCCGAATTACAAATGGTAGTAATAGAGGAAGGAAAAAGGCTTCCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCGAATTACAAATGGTAGTAATAGAGGAAGGAAAAAGGCTTCCCAAG  450

seq1  AGAAAAGAATTGGTGGCAGTTGAAACTCAGAGCTCTCTGCCTACAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAATTGGTGGCAGTTGAAACTCAGAGCTCTCTGCCTACAAGATG  500

seq1  CCTGTCAGATCATTCTGCTAAGGTCCTGCCAATGCTGATGGGCAACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGATCATTCTGCTAAGGTCCTGCCAATGCTGATGGGCAACATCT  550

seq1  AAGTTCCAGGAATGACTGGCATGGGTTGCTGAAGCAGGATGAAATAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAGGAATGACTGGCATGGGTTGCTGAAGCAGGATGAAATAACAA  600

seq1  AGCTGCTATAAAATTCAGATTTTTAAAAAATTTTTTTTATTGTTGTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTATAAAATTCAGATTTTTAAAAAATTTTTTTTATTGTTGTTGTT  650

seq1  GTTTTTCCTCATAGCAGAAATAACTCAGAATTAAATGTCCCTTTATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTCATAGCAGAAATAACTCAGAATTAAATGTCCCTTTATGAGA  700

seq1  AAGAAAATTGGAGTGAGCTAAACTTTTATTACAAAACTGAACACAATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTGGAGTGAGCTAAACTTTTATTACAAAACTGAACACAATCAA  750

seq1  GGCATCAGGTATTAAGCCAATGTTATCTAAATTAAAAGAGGTATTAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGGTATTAAGCCAATGTTATCTAAATTAAAAGAGGTATTAGTCA  800

seq1  TAAGAGCTGTTTTGCATATAAAATTTTTGAAATTATTCCAGATTATTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTGTTTTGCATATAAAATTTTTGAAATTATTCCAGATTATTCAT  850

seq1  AATTAACTTAATTATTTATACAACTACAGATAATTCAAAACATATATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTTAATTATTTATACAACTACAGATAATTCAAAACATATATATA  900

seq1  TATATATATATATATATATGCATGCTTGATCTCATACAGGTTTGCCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATGCATGCTTGATCTCATACAGGTTTGCCAGCC  950

seq1  TGAGGAGTTAGACCTCCTCATTTTATGTAG-ATTAGAATATATTGTAAAT  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGGAGTTAGACCTCCTCATTTTATGTAGAATTAGAATATATTGTAAAT  1000

seq1  AT---------AGAGTATATAGTAAT  1016
      ||         | |||||||| ||||
seq2  ATAAAAGTAAAATAGTATATA-TAAT  1025

seq1: chr19_51607583_51608731
seq2: B6Ng01-100J06.g_71_1207 (reverse)

seq1  TGTTAACATGCTTGTGATGAGTGTGGGGGAGCTTAGGAATTGGAAATTTT  50
      |||||||| |||||||| ||  ||||||||||||||||||| ||||||||
seq2  TGTTAACACGCTTGTGA-GAAGGTGGGGGAGCTTAGGAATT-GAAATTTT  48

seq1  TCAAATATAGTATT-CAAATATATCAACTCAGATTTAGGGATGATCCCTG  99
      || ||||||||||| ||| |||||| ||||||| ||||||||||| ||||
seq2  TC-AATATAGTATTCCAATTATATC-ACTCAGA-TTAGGGATGATTCCTG  95

seq1  GAAAGTTAGTCCCCATGAGTCTTAACAAACTAGTATATAAATGCAGTAAA  149
      | ||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  G-AAGTTAGTCCCCATGAGTCTT-ACAAACTAGTATATAAATGCAGTAA-  142

seq1  TATAAACCACACAATG-TTCTGTGATGCCCCGGTTCCGTGGGAAACCCAG  198
       || |||||||||||| |||||||||||||||| ||||| ||||||||||
seq2  -ATTAACCACACAATGTTTCTGTGATGCCCCGG-TCCGT-GGAAACCCAG  189

seq1  GAGAGCGCAGGACATGCAGAGTCCGCTGCAAGTGTGCATG-AAAGTATTT  247
      ||||||||||||||||||||||||||||||||||| |||| |||||| ||
seq2  GAGAGCGCAGGACATGCAGAGTCCGCTGCAAGTGT-CATGAAAAGTA-TT  237

seq1  TATTGAACGAGCCAGACCTGGGCAGCAAGCCTTCAGGAACTAGTTTTATG  297
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTGAACGAGCCAGACCTGGGCAGCAAGCCTTCAGGAACTAG-TTTATG  286

seq1  GCCGGCCATATATGCCTGTGACCTTTGATTACCGTTTTACTATGATTTAA  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCGGCCATATATGCCTGTGA-CTTTGATTACCGTTTTACTATGATTTAA  335

seq1  GCATGGGTCCCTAATCTCCTTTCTTCAAGGATAGGTGCCAGCTACACCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTCCCTAATCTCCTTTCTTCAAGGATAGGTGCCAGCTACACCTG  385

seq1  ATTATCTAAGAGTGCTCTGGCCTTGGCGTCATTGAAGTTGAGGAGTTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTAAGAGTGCTCTGGCCTTGGCGTCATTGAAGTTGAGGAGTTTTT  435

seq1  TTTGTCATTTGTCTTATTTGGATTGATACCGGCAGCTCCTTGTGTCCTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTTGTCTTATTTGGATTGATACCGGCAGCTCCTTGTGTCCTCC  485

seq1  TGGGGAGGCTAGGGAGGTGGAATGACCGCCCCCCCACAGCACCCAGCGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGCTAGGGAGGTGGAATGACCGCCCCCCCACAGCACCCAGCGTT  535

seq1  TGCTGCAAGAGGGGAGGAGGAGCAGGGCTTCTGAGGGGCAACGCGGAGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAGAGGGGAGGAGGAGCAGGGCTTCTGAGGGGCAACGCGGAGGC  585

seq1  AAAAGGCAGAAGCAAGCCTTATTGAGCTTCTCAGGGAAAGTGCAGAGGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGAAGCAAGCCTTATTGAGCTTCTCAGGGAAAGTGCAGAGGCT  635

seq1  AGCCACAGAAGCAAGTCTCACTGTGCTTGCTGTGGGAAAGAGAGATCCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGAAGCAAGTCTCACTGTGCTTGCTGTGGGAAAGAGAGATCCTA  685

seq1  GGGGAAAGGGGGACTTCTGCAGGAGAGGACAGAAGCAAGCGGTCTGTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGGGGGACTTCTGCAGGAGAGGACAGAAGCAAGCGGTCTGTGCA  735

seq1  CCTCAGTCGATGTTATAAGGTTGTTATAAAGTTTAATCAGCTGGTATGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTCGATGTTATAAGGTTGTTATAAAGTTTAATCAGCTGGTATGTC  785

seq1  TACACTAGTTATCACAATGATTCATATAAAGTAAGTGTTCAACAAGTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGTTATCACAATGATTCATATAAAGTAAGTGTTCAACAAGTAAA  835

seq1  TGTTGTCACCCTTTTCCTGGAAGATTCCTTCAAAAACTAAAAACACACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCACCCTTTTCCTGGAAGATTCCTTCAAAAACTAAAAACACACTG  885

seq1  TACTATAAGTTGAGATGTAGAGATTGTATGGTACAGGTTAGGCCTCCTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAGTTGAGATGTAGAGATTGTATGGTACAGGTTAGGCCTCCTGG  935

seq1  AGAGGAGAATACTGAGTGTGGTGGGTGCTAGAAAGAAAGCTCATTTCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAATACTGAGTGTGGTGGGTGCTAGAAAGAAAGCTCATTTCTCT  985

seq1  CCAACATCAACAACAAACGGCCATGACAAAGGAAAGACTTTTCATTTATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCAACAACAAACGGCCATGACAAAGGAAAGACTTTTCATTTATT  1035

seq1  CCAAGGGTTATATTTCACTGGGGATTGAAAAGACTTTGTCTGAAATTCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGTTATATTTCACTGGGGATTGAAAAGACTTTGTCTGAAATTCTG  1085

seq1  ACGGTTATTTTATACTTTCTAAAGAGACCAGTGGAACTGTTTTATTGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTATTTTATACTTTCTAAAGAGACCAGTGGAACTGTTTTATTGAAT  1135

seq1  TC  1149
      ||
seq2  TC  1137