BAC Information

Click to search

BAC

Clone NameB6Ng01-101L22
Chromosome19 (Build37)
Map Location 45,444,327 - 45,541,397
singlet/doubletdoublet
Overlap geneBtrc, EG627889
Upstream geneScd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream genePoll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101L22.bB6Ng01-101L22.g
ACCDH910833DH910834
length1,099118
definitionDH910833|Mus musculus domesticus DNA, BAC clone: B6Ng01-101L22, 5' end.DH910834|Mus musculus domesticus DNA, BAC clone: B6Ng01-101L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,444,327 - 45,445,421)(45,541,280 - 45,541,397)
sequence
gaattcactctgtagaccaggctggcctctaactcagaaatctgcctgcc
cctgcctcccaagtgctgggattaaacctttactgtttaaatgataattc
tttgtgttcgtaatagatgaatgagtggcagtgcattgccaggctggact
tggtgttaatgtaggtactgaggagggtgaggcagtagaatcctcctgtg
gattatagggtgagttaaaggccagcgtgggtgacttagtgagggcttat
tacaatgaaaactgaaaagaagggatggataggcgttgtctaatgtgcta
ggaacctgagttcaattcctagcgcctgaagaatatgaagaaaaagaagt
ggattattaaatataaaagtaaaaaaatgttattttgaatatttgttagg
aatttttattgccaaattattgagcttccagaagagatcatttgctatct
cttatgtttaaaccctgaagaaaggaagcaggtaagagattttttttttt
tctctgctgaggggagacaggacattatgcaaaaatcttgatcatatata
gataaagccctttgtcagtagcactcaaacacctttgagatgtagctcaa
agtagatagtttgtttagcatgcacaggctctgggtttgatacccagctc
tggaaaaccaaaatcagcagcaacaactaatggcccaaagtcttcgtgct
caggatgccttacagtctttacctgtttcctagggacactgtgttgtaga
gcagaagtcctgtcttcatatgaggatctgttgaaggtgaaatagaaact
atttacccaagtttaactttttttttaaagatttattttattattatact
gtagctgacttcagacgcaccagaaccagggtgtcagatctcattacggg
tggttgtgggccaccatgcggttgctgggatttgaactcgggaacctttg
aaagagcagtcaccgcctcttaaccgctgagcaatctcgccagcccgaag
ttgaacattcttaataatagcattgtcaatgagaaagaattgtgaaacct
agagatcattcctcacgcccaataagaacttgtctttagcaagcagttc
tgcttccttcaggatggttgttaggctatgcttctaatcccaggacttgg
gaaataacttgggctacacagaccttgtcaaaagaacaaggtgggtgcag
ggagggaaacggggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45444327_45445421
seq2: B6Ng01-101L22.b_47_1145

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCTAACTCAGAAATCTGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCTAACTCAGAAATCTGCCTGCC  50

seq1  CCTGCCTCCCAAGTGCTGGGATTAAACCTTTACTGTTTAAATGATAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCCAAGTGCTGGGATTAAACCTTTACTGTTTAAATGATAATTC  100

seq1  TTTGTGTTCGTAATAGATGAATGAGTGGCAGTGCATTGCCAGGCTGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTCGTAATAGATGAATGAGTGGCAGTGCATTGCCAGGCTGGACT  150

seq1  TGGTGTTAATGTAGGTACTGAGGAGGGTGAGGCAGTAGAATCCTCCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTAATGTAGGTACTGAGGAGGGTGAGGCAGTAGAATCCTCCTGTG  200

seq1  GATTATAGGGTGAGTTAAAGGCCAGCGTGGGTGACTTAGTGAGGGCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAGGGTGAGTTAAAGGCCAGCGTGGGTGACTTAGTGAGGGCTTAT  250

seq1  TACAATGAAAACTGAAAAGAAGGGATGGATAGGCGTTGTCTAATGTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAAAACTGAAAAGAAGGGATGGATAGGCGTTGTCTAATGTGCTA  300

seq1  GGAACCTGAGTTCAATTCCTAGCGCCTGAAGAATATGAAGAAAAAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGAGTTCAATTCCTAGCGCCTGAAGAATATGAAGAAAAAGAAGT  350

seq1  GGATTATTAAATATAAAAGTAAAAAAATGTTATTTTGAATATTTGTTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATTAAATATAAAAGTAAAAAAATGTTATTTTGAATATTTGTTAGG  400

seq1  AATTTTTATTGCCAAATTATTGAGCTTCCAGAAGAGATCATTTGCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTGCCAAATTATTGAGCTTCCAGAAGAGATCATTTGCTATCT  450

seq1  CTTATGTTTAAACCCTGAAGAAAGGAAGCAGGTAAGAGATTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTTAAACCCTGAAGAAAGGAAGCAGGTAAGAGATTTTTTTTTTT  500

seq1  TCTCTGCTGAGGGGAGACAGGACATTATGCAAAAATCTTGATCATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTGAGGGGAGACAGGACATTATGCAAAAATCTTGATCATATATA  550

seq1  GATAAAGCCCTTTGTCAGTAGCACTCAAACACCTTTGAGATGTAGCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGCCCTTTGTCAGTAGCACTCAAACACCTTTGAGATGTAGCTCAA  600

seq1  AGTAGATAGTTTGTTTAGCATGCACAGGCTCTGGGTTTGATACCCAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAGTTTGTTTAGCATGCACAGGCTCTGGGTTTGATACCCAGCTC  650

seq1  TGGAAAACCAAAATCAGCAGCAACAACTAATGGCCCAAAGTCTTCGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACCAAAATCAGCAGCAACAACTAATGGCCCAAAGTCTTCGTGCT  700

seq1  CAGGATGCCTTACAGTC-TTACCTGTTTCCTAGGGACACTGTGTTGTAGA  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGGATGCCTTACAGTCTTTACCTGTTTCCTAGGGACACTGTGTTGTAGA  750

seq1  GCAGAAGTCCTGTCTTCATATGAGGATCTGTTGAAGGTGAAATAGAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTCCTGTCTTCATATGAGGATCTGTTGAAGGTGAAATAGAAACT  800

seq1  ATTTACCCAAGTTTAACTTTTTTTTTAAAGATTTA-TTTATTATTATACT  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTACCCAAGTTTAACTTTTTTTTTAAAGATTTATTTTATTATTATACT  850

seq1  GTAGCTGACTTCAGACGCACCAGAA-CAGGGTGTCAGATCTCATTACGGG  897
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAGCTGACTTCAGACGCACCAGAACCAGGGTGTCAGATCTCATTACGGG  900

seq1  TGGTTGTGGGCCACCATGCGGTTGCTGGGATTTGAACTCGGG-ACCTTTG  946
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGTTGTGGGCCACCATGCGGTTGCTGGGATTTGAACTCGGGAACCTTTG  950

seq1  AAAGAGCAGTCACCG-CTCTTAACCGCTGAGCCATCTCGCCAGCCCGAAG  995
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  AAAGAGCAGTCACCGCCTCTTAACCGCTGAGCAATCTCGCCAGCCCGAAG  1000

seq1  TTGAACA-TCTTAATAATAGCATTGTCAATGAG-AAGAAATGTGAAAACT  1043
      ||||||| ||||||||||||||||||||||||| ||||| ||||||| ||
seq2  TTGAACATTCTTAATAATAGCATTGTCAATGAGAAAGAATTGTGAAACCT  1050

seq1  AGAGATCATTCCCCACCGCCCAATAAGACCTTGTCCTTTAGCAAGGCAGT  1093
      |||||||||||| || |||||||||||| ||||| ||||||||| |||||
seq2  AGAGATCATTCCTCA-CGCCCAATAAGAACTTGT-CTTTAGCAA-GCAGT  1097

seq1  TC  1095
      ||
seq2  TC  1099

seq1: chr19_45541280_45541397
seq2: B6Ng01-101L22.g_75_192 (reverse)

seq1  CACACCCCGTTTCCCTCCCTGCACCCACCTTGTTCTTTTGACAAGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCGTTTCCCTCCCTGCACCCACCTTGTTCTTTTGACAAGGTCTG  50

seq1  TGTAGCCCAAGTTATTTCCCAAGTCCTGGGATTAGAAGCATAGCCTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCAAGTTATTTCCCAAGTCCTGGGATTAGAAGCATAGCCTAACA  100

seq1  ACCATCCTGAAGGAAGCA  118
      ||||||||||||||||||
seq2  ACCATCCTGAAGGAAGCA  118