BAC Information

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BAC

Clone NameB6Ng01-101O23
Chromosome19 (Build37)
Map Location 24,265,138 - 24,420,006
singlet/doubletdoublet
Overlap geneFxn, LOC667743, Pip5k1b, LOC100042457
Upstream geneSmc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
Downstream gene2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101O23.bB6Ng01-101O23.g
ACCDH910972DH910973
length871502
definitionDH910972|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O23, 5' end.DH910973|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,419,141 - 24,420,006)(24,265,138 - 24,265,645)
sequence
gaattcaaaggacgacctcatgtgcgccagttgtcatcttccgccttttt
tgtgacagtgtctctgttttcctgcctcataagcgaagttcattggccca
ggagctgccaagagtctcctgtctgcctccaagattgtggaagtagagat
gtacttgctttgtgtcaccttttacgtgctctggggagtcaaactcaggt
cctcacatttgcttgagtagcaaatgctttctatccagtgagccatgttc
atagctttttacccacctctgcctcctgtttttgagacaagggctcaatg
tagcacaagccagccttaaatttacattcatggtatgtgtcgttcattca
tcatactcatcagtactctcgaatatatatatatatatatatatatatat
atatatatatatatatatacatatattttatttatttatttatttattta
tttatttatttatttgctaatattgctatggattgaactcagggcctcag
cagcgctcagcaagcactctgtgactctgctacagatcccacgagcagat
tcattaaaataacctctctaaatacatattactcatgtagctacaaagac
acttcgtgcattgttttgtacgtgagaccttaatgactaaggtaaaaaga
atgtatccatggcttttcagagctgccacatctgtgagtccagagttcag
catggtctttggcgagctaaacgtttggtggttgtatcttgttgctctgc
cttcctcttgggctgcatagaagagtccagactgttggggtagcagatgg
ggcagcactggctctggagaagcgggacaaagtgtgagacatcggggggt
ggtttggatctcttccacctg
actaggtagacctggttgacctggaactcactaggtagaccaggctgctg
gaactcagtaatccaccttcaaaccgtgctgatgagaggagaccccaaga
acaagacagataatgatccagaggaggctctgcatacaccctcctcccct
caggccagacagtgctagtagatcatagcgtccttgctcaatgaacttag
gagcatctaggaatccttaactcggggcagcttcgctcctaggaggtcct
tctacgttctgatttttgcaactctgactggcaagtcttccccatagcag
ccaggcttccttgaaagtcagttctcctgatcgacttttaagaaagcctg
tcttgtgaggtgcttccatagctggcttggagcctcctttataaaagcat
tagttttgagggcagaatcctcataaccgaatcacgccttaagacaactc
ctaagtaccatcacacccaggtggttcaaatgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24419141_24420006
seq2: B6Ng01-101O23.b_52_922 (reverse)

seq1  CAGGT-GAAGCGATCCAAACCAACCCCCGCTGTCTCACAC-TTGT-CCGC  47
      ||||| |||| ||||||||||| |||||| |||||||||| |||| ||||
seq2  CAGGTGGAAGAGATCCAAACCACCCCCCGATGTCTCACACTTTGTCCCGC  50

seq1  TTCTCCAGAGCCAGTGCTGCCCCATCTGCTA-CCCAACAGTCTGGACTCT  96
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTCCAGAGCCAGTGCTGCCCCATCTGCTACCCCAACAGTCTGGACTCT  100

seq1  TCTATGCAG-CCAAGAGGAAGGCAGAGCAACAAGATACAACCACCAAACG  145
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCAGCCCAAGAGGAAGGCAGAGCAACAAGATACAACCACCAAACG  150

seq1  -TTAGCTCGCCAAAGACCATGCTGAACTCTGGACTCACAGATGTGGCAGC  194
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCGCCAAAGACCATGCTGAACTCTGGACTCACAGATGTGGCAGC  200

seq1  TCTG-AAAGCCATGGATACATTCTTTTTACCTTAGTCATTAAGGTCTCAC  243
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAGCCATGGATACATTCTTTTTACCTTAGTCATTAAGGTCTCAC  250

seq1  GTACAAAACAATGCACGAAGTGTCTTTGTAGCTACATGAGTAATATGTAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAACAATGCACGAAGTGTCTTTGTAGCTACATGAGTAATATGTAT  300

seq1  TTAGAGAGGTTATTTTAATGAATCTGCTCGTGGGATCTGTAGCAGAGTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGGTTATTTTAATGAATCTGCTCGTGGGATCTGTAGCAGAGTCA  350

seq1  CAGAGTGCTTGCTGAGCGCTGCTGAGGCCCTGAGTTCAATCCATAGCAAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGCTTGCTGAGCGCTGCTGAGGCCCTGAGTTCAATCCATAGCAAT  400

seq1  ATTAGCAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAATATA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAATATA  450

seq1  TGTATATATATATATATATATATATATATATATATATATATATATATATA  493
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG--TATATATATATATATATATATATATATATATATATATATATATATA  498

seq1  TTCGAGAGTACTGATGAGTATGATGAATGAACGACACATACCATGAATGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGAGTACTGATGAGTATGATGAATGAACGACACATACCATGAATGT  548

seq1  AAATTTAAGGCTGGCTTGTGCTACATTGAGCCCTTGTCTCAAAAACAGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGGCTGGCTTGTGCTACATTGAGCCCTTGTCTCAAAAACAGGA  598

seq1  GGCAGAGGTGGGTAAAAAGCTATGAACATGGCTCACTGGATAGAAAGCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTGGGTAAAAAGCTATGAACATGGCTCACTGGATAGAAAGCAT  648

seq1  TTGCTACTCAAGCAAATGTGAGGACCTGAGTTTGACTCCCCAGAGCACGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACTCAAGCAAATGTGAGGACCTGAGTTTGACTCCCCAGAGCACGT  698

seq1  AAAAGGTGACACAAAGCAAGTACATCTCTACTTCCACAATCTTGGAGGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGACACAAAGCAAGTACATCTCTACTTCCACAATCTTGGAGGCA  748

seq1  GACAGGAGACTCTTGGCAGCTCCTGGGCCAATGAACTTCGCTTATGAGGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGACTCTTGGCAGCTCCTGGGCCAATGAACTTCGCTTATGAGGC  798

seq1  AGGAAAACAGAGACACTGTCACAAAAAAGGCGGAAGATGACAACTGGCGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAGAGACACTGTCACAAAAAAGGCGGAAGATGACAACTGGCGC  848

seq1  ACATGAGGTCGTCCTTTGAATTC  866
      |||||||||||||||||||||||
seq2  ACATGAGGTCGTCCTTTGAATTC  871

seq1: chr19_24265138_24265645
seq2: B6Ng01-101O23.g_71_578

seq1  GAATTCACTAGGTAGACCTGGTTGACCTGGAACTCACTAGGTAGACCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGTAGACCTGGTTGACCTGGAACTCACTAGGTAGACCAGG  50

seq1  CTGCTGGAACTCAGTAATCCACCTTCAAACCGTGCTGATGAGAGGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAACTCAGTAATCCACCTTCAAACCGTGCTGATGAGAGGAGACC  100

seq1  CCAAGAACAAGACAGATAATGATCCAGAGGAGGCTCTGCATACACCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACAAGACAGATAATGATCCAGAGGAGGCTCTGCATACACCCTCC  150

seq1  TCCCCTCAGGCCAGACAGTGCTAGTAGATCATAGCGTCCTTGCTCAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCAGGCCAGACAGTGCTAGTAGATCATAGCGTCCTTGCTCAATGA  200

seq1  ACTTAGGAGCATCTAGGAATCCTTAACTCGGGGCAGCTTCGCTCCTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGAGCATCTAGGAATCCTTAACTCGGGGCAGCTTCGCTCCTAGGA  250

seq1  GGTCCTTCTACGTTCTGATTTTTGCAACTCTGACTGGCAAGTCTTCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCTACGTTCTGATTTTTGCAACTCTGACTGGCAAGTCTTCCCCA  300

seq1  TAGCAGCCAGGCTTCCTTGAAAGTCAGTTCTCCTGATCGACTTTTAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCAGGCTTCCTTGAAAGTCAGTTCTCCTGATCGACTTTTAAGAA  350

seq1  AGCCTGTCTTGTGAGGTGCTTCCATAGCTGGCTTGGAGCCTCCTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCTTGTGAGGTGCTTCCATAGCTGGCTTGGAGCCTCCTTTATAA  400

seq1  AAGCATTAGTTTTGAGGGCAGAATCCTCATAACCGAATCACGCCTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTAGTTTTGAGGGCAGAATCCTCATAACCGAATCACGCCTTAAGA  450

seq1  CAACTCCTAAGTACCATCACACCCAGGTGGTTCAAATGTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTAAGTACCATCACACCCAGGTGGTTCAAATGTGTGTGTGTGTG  500

seq1  TGTGTGTG  508
      ||||||||
seq2  TGTGTGTG  508