BAC Information

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BAC

Clone NameB6Ng01-101P19
Chromosome19 (Build37)
Map Location 9,097,675 - 9,218,475
singlet/doubletdoublet
Overlap geneAhnak, Scgb1a1, Asrgl1
Upstream gene9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g
Downstream geneEG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P19.bB6Ng01-101P19.g
ACCDH911007DH911008
length1,1101,043
definitionDH911007|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P19, 5' end.DH911008|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,217,345 - 9,218,475)(9,097,675 - 9,098,704)
sequence
gaattcacttttgggcactgattttaattattcttagactgcttgaaatc
tccctagcctatccacagatgggcagaatcaagcagcccagtgtttaagg
aataaatgaaactcattcatcattcattgagcacttgaataaaaagagga
aagctaaaagagctcacattcttcagcctccctctggattactctggatt
ctatgagaaaaactgtgacagccccagattcaatgtgcttacaaagacct
gctgaatagaaaatgctgggggtgggacctagcaagctgcatgctgcctc
caggtaattctcaggtcaatgtctgaagccacaggctttagctacctctt
ctcgctgtgaggagaggtcagggtcaggactgggtatccttccacagaaa
cctacttatggcagtgataaatcaaagttttttaagaccaaaatatctct
aaaaataagacggttggttatactgttacaaatgctagcccaatgaaagg
attggccctgggaccaagtccctaagccagcaactgcttgttgagagtgt
taaatttgggctaggaatactaaagctgtgttctctggcagcagccaaat
ctttctccctctatcctcatagctgctgtcaaagaaatgaaaaggctctc
cctgagagcctgcctttctgtccactattcttgctaccatcccaaaggat
gtttatggagagccgatgaaggctacacatggcacatccattatgaggga
caaattaaccaaaagggccaaacctctgccccatcttctcctgtcacaca
gatatatgagacaactaactgcaggcatgtactatgggatacttgtgaaa
tttttgagagaaggaagtataaatatgttaacaaaacttactagcaaaga
atttaagaccagaaggaaagctttattttaattttaaaaagatacatgag
ccagcaagcagggtcggagcgagggagctggaacagaggagaaacgaagt
ggggtacaatcttgtacaagagtgcccttagagaacaaagaaaaaaaagg
gggggagaagaacaaagagatgttgtagcatactttcgttgcataataaa
acatcatgtc
gaattctgtgcatgaatgcttgccacagagctgggaataccaggagctgt
ttaccagcctctggatcaccctgtggcgtcaggcagcttcaggggcctcc
tgaggctgaatgctccctgcagagtagcagccttgtgccacagcaaatgt
gtgggggaacattctgcccaggagggcggtttcgtttccccataaatgcc
tctgtttttttccacaacaagtttgaggtctggccagcacagaaagactt
cccggtaggacggttgaggttggaaagggttacagatgaagaacccttct
ttttttttttttttttttttttttttaaatttttggacagacttttagtg
cacaagtgctttatcttcaggacatttcacactgtgttctcagctccacc
caggaaagtaggcactacccactccatctcacagtccagaaaggggaggc
tctactcagagcctaaaagggatgatcctgcctagggaaatcaaagcttt
cagattttagaaactaaattgtttttcctcccccttgatagtttcctgaa
ggaagggggagtttcggggggcgggggggggcataaaaaatctcttgaaa
tctgtagatcttagacattttcttgtctcagaaaagtatttaagggaata
ataataaaaactagagccaagcattggcgacacatgcctttaatctcagc
actggggaggcagaagcaggtggattctctgtgaatgcttaggtcagccc
tggtctatatattgagtgtccacctagcccaaggttgcatagtgagaacc
ttgtctcaaaaacaaacaaacaaacaacctaaccaacaacactaattatc
tgggggatggagaagagggctcaatatttaaaacaacttattgcttcttg
tagaggtcctgaattagtttccaaccacccacatggccaccctacacctg
ctgtcagttcaagtttctgggggatctgacacccttcttctgaccctcca
gtgccttatgttttgcattggcgctacatatgctattgaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9217345_9218475
seq2: B6Ng01-101P19.b_48_1157 (reverse)

seq1  GACATGATGTTTTATTATGGCAACAGAAAGTAATGCCTACAAACCCATCT  50
      |||||||||||||||||| ||||| |||||| ||| ||||||   |||||
seq2  GACATGATGTTTTATTAT-GCAAC-GAAAGT-ATG-CTACAA---CATCT  43

seq1  CTTTGTTCCTTCTCCCCCCCCTTTTTTTCTTTGTTCCTTCTAAGGGCACT  100
      ||||||| |||||||||||| |||||||||||||||  ||||||||||||
seq2  CTTTGTT-CTTCTCCCCCCCTTTTTTTTCTTTGTTC--TCTAAGGGCACT  90

seq1  CTTGTACCAAAGGTTGTACCCCCACTTCCCTTTCTCCCTCTTGTTCCAGC  150
      |||||||  ||| ||||| |||||||| | ||||| |||| |||||||| 
seq2  CTTGTAC--AAGATTGTA-CCCCACTT-CGTTTCT-CCTC-TGTTCCAG-  133

seq1  CTCCCTCGCTCCGACCCCTGCTTGCCTGGCTCATGTATCTTTTTTAAAAA  200
      |||||||||||||| ||||||||| |||||||||||||||||||  ||||
seq2  CTCCCTCGCTCCGA-CCCTGCTTG-CTGGCTCATGTATCTTTTT--AAAA  179

seq1  TTAAAATAAAGCTTTCCTTCTGGTCTTAAATTCTTTGCTAGTAAGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAAGCTTTCCTTCTGGTCTTAAATTCTTTGCTAGTAAGTTTTG  229

seq1  TTAACATATTTATACTTCCTTCTCTCAAAAATTTCACAAGTATCCCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATATTTATACTTCCTTCTCTCAAAAATTTCACAAGTATCCCATAG  279

seq1  TACATGCCTGCAGTTAGTTGTCTCATATATCTGTGTGACAGGAGAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTGCAGTTAGTTGTCTCATATATCTGTGTGACAGGAGAAGATG  329

seq1  GGGCAGAGGTTTGGCCCTTTTGGTTAATTTGTCCCTCATAATGGATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGGTTTGGCCCTTTTGGTTAATTTGTCCCTCATAATGGATGTGC  379

seq1  CATGTGTAGCCTTCATCGGCTCTCCATAAACATCCTTTGGGATGGTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAGCCTTCATCGGCTCTCCATAAACATCCTTTGGGATGGTAGCA  429

seq1  AGAATAGTGGACAGAAAGGCAGGCTCTCAGGGAGAGCCTTTTCATTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTGGACAGAAAGGCAGGCTCTCAGGGAGAGCCTTTTCATTTCTT  479

seq1  TGACAGCAGCTATGAGGATAGAGGGAGAAAGATTTGGCTGCTGCCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGCTATGAGGATAGAGGGAGAAAGATTTGGCTGCTGCCAGAGA  529

seq1  ACACAGCTTTAGTATTCCTAGCCCAAATTTAACACTCTCAACAAGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTTTAGTATTCCTAGCCCAAATTTAACACTCTCAACAAGCAGTT  579

seq1  GCTGGCTTAGGGACTTGGTCCCAGGGCCAATCCTTTCATTGGGCTAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTAGGGACTTGGTCCCAGGGCCAATCCTTTCATTGGGCTAGCAT  629

seq1  TTGTAACAGTATAACCAACCGTCTTATTTTTAGAGATATTTTGGTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAGTATAACCAACCGTCTTATTTTTAGAGATATTTTGGTCTTAA  679

seq1  AAAACTTTGATTTATCACTGCCATAAGTAGGTTTCTGTGGAAGGATACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTGATTTATCACTGCCATAAGTAGGTTTCTGTGGAAGGATACCC  729

seq1  AGTCCTGACCCTGACCTCTCCTCACAGCGAGAAGAGGTAGCTAAAGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGACCCTGACCTCTCCTCACAGCGAGAAGAGGTAGCTAAAGCCTG  779

seq1  TGGCTTCAGACATTGACCTGAGAATTACCTGGAGGCAGCATGCAGCTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCAGACATTGACCTGAGAATTACCTGGAGGCAGCATGCAGCTTGC  829

seq1  TAGGTCCCACCCCCAGCATTTTCTATTCAGCAGGTCTTTGTAAGCACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCCACCCCCAGCATTTTCTATTCAGCAGGTCTTTGTAAGCACATT  879

seq1  GAATCTGGGGCTGTCACAGTTTTTCTCATAGAATCCAGAGTAATCCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGGGGCTGTCACAGTTTTTCTCATAGAATCCAGAGTAATCCAGAG  929

seq1  GGAGGCTGAAGAATGTGAGCTCTTTTAGCTTTCCTCTTTTTATTCAAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAAGAATGTGAGCTCTTTTAGCTTTCCTCTTTTTATTCAAGTG  979

seq1  CTCAATGAATGATGAATGAGTTTCATTTATTCCTTAAACACTGGGCTGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAATGATGAATGAGTTTCATTTATTCCTTAAACACTGGGCTGCT  1029

seq1  TGATTCTGCCCATCTGTGGATAGGCTAGGGAGATTTCAAGCAGTCTAAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGCCCATCTGTGGATAGGCTAGGGAGATTTCAAGCAGTCTAAGA  1079

seq1  ATAATTAAAATCAGTGCCCAAAAGTGAATTC  1131
      |||||||||||||||||||||||||||||||
seq2  ATAATTAAAATCAGTGCCCAAAAGTGAATTC  1110

seq1: chr19_9097675_9098704
seq2: B6Ng01-101P19.g_71_1113

seq1  GAATTCTGTGCATGAATGCTTGCCACAGAGCTGGGAATACCAGGAGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCATGAATGCTTGCCACAGAGCTGGGAATACCAGGAGCTGT  50

seq1  TTACCAGCCTCTGGATCACCCTGTGGCGTCAGGCAGCTTCAGGGGCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGCCTCTGGATCACCCTGTGGCGTCAGGCAGCTTCAGGGGCCTCC  100

seq1  TGAGGCTGAATGCTCCCTGCAGAGTAGCAGCCTTGTGCCACAGCAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGAATGCTCCCTGCAGAGTAGCAGCCTTGTGCCACAGCAAATGT  150

seq1  GTGGGGGAACATTCTGCCCAGGAGGGCGGTTTCGTTTCCCCATAAATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAACATTCTGCCCAGGAGGGCGGTTTCGTTTCCCCATAAATGCC  200

seq1  TCTGTTTTTTTCCACAACAAGTTTGAGGTCTGGCCAGCACAGAAAGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTTTCCACAACAAGTTTGAGGTCTGGCCAGCACAGAAAGACTT  250

seq1  CCCGGTAGGACGGTTGAGGTTGGAAAGGGTTACAGATGAAGAACCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTAGGACGGTTGAGGTTGGAAAGGGTTACAGATGAAGAACCCTTCT  300

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTGGACAGACTTTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTGGACAGACTTTTAGTG  350

seq1  CACAAGTGCTTTATCTTCAGGACATTTCACACTGTGTTCTCAGCTCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGCTTTATCTTCAGGACATTTCACACTGTGTTCTCAGCTCCACC  400

seq1  CAGGAAAGTAGGCACTACCCACTCCATCTCACAGTCCAGAGAGGTGAGGC  450
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  CAGGAAAGTAGGCACTACCCACTCCATCTCACAGTCCAGAAAGGGGAGGC  450

seq1  TCTACTCAGAGCCTAGAAGGGATGATCCTGCCTAGGGAAATCAAAGCTTT  500
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTACTCAGAGCCTAAAAGGGATGATCCTGCCTAGGGAAATCAAAGCTTT  500

seq1  CAGATTTTAGAAACTAAATTGTTTTTCCTCCCCCTTGATAGTTTCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTAGAAACTAAATTGTTTTTCCTCCCCCTTGATAGTTTCCTGAA  550

seq1  GGAAGGGGGAGTTTCGGGGGGCGGGGGGGGGCATAAAAAATCTCTTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGGAGTTTCGGGGGGCGGGGGGGGGCATAAAAAATCTCTTGAAA  600

seq1  TCTGTAGATCTTAGACATTTTCTTGTCTCAG-AAAGTA-TTAAGGGAATA  648
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  TCTGTAGATCTTAGACATTTTCTTGTCTCAGAAAAGTATTTAAGGGAATA  650

seq1  ATAATAAAAACTAGAGCCAAGCA-TGGCGACACATGCCTTTAATCTCAGC  697
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAATAAAAACTAGAGCCAAGCATTGGCGACACATGCCTTTAATCTCAGC  700

seq1  ACTGGGGAGGCAGAAGCAGGTGGATTCTCTGTGAATGC-TAGGTCAG-CC  745
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  ACTGGGGAGGCAGAAGCAGGTGGATTCTCTGTGAATGCTTAGGTCAGCCC  750

seq1  TGGTCTATATAGTTGAGTGTCCAGCTAG-CCAAGGTTGCATAGTGAGAAC  794
      ||||||||||| ||||||||||| |||| |||||||||||||||||||||
seq2  TGGTCTATATA-TTGAGTGTCCACCTAGCCCAAGGTTGCATAGTGAGAAC  799

seq1  C-TGTCTCAAAAAACAAACAAACAAACAAACAAACAAACAAACAACTAA-  842
      | |||||| |||||||||||||||||||| | ||| |||||   ||||| 
seq2  CTTGTCTC-AAAAACAAACAAACAAACAACCTAACCAACAA--CACTAAT  846

seq1  TAACT-GGGGATGGAG-AGATGGCTCAGTAGTTAAGAACACTTATTGC-T  889
      || || |||||||||| ||| |||||| || |||| |  ||||||||| |
seq2  TATCTGGGGGATGGAGAAGAGGGCTCAATATTTAAAACAACTTATTGCTT  896

seq1  CTTGTAGAGGTCCTGGATTCAGTTCC-AGCACCCACATGGCCA-CCTACA  937
      ||||||||||||||| |||   |||| | |||||||||||||| ||||| 
seq2  CTTGTAGAGGTCCTGAATTAGTTTCCAACCACCCACATGGCCACCCTAC-  945

seq1  ACCAGCTG-CAGTTCCAGTTCCT-GGGGATCTGACACCC-TCTTCTGA-C  983
      ||| |||| |||||| |||| || ||||||||||||||| |||||||| |
seq2  ACCTGCTGTCAGTTCAAGTTTCTGGGGGATCTGACACCCTTCTTCTGACC  995

seq1  CTCCAGGGCCTCATG-TATGCATATGGCGC-ACATATGCACATGAAGTT  1030
      |||||| |||| ||| | ||||| |||||| ||||||||   |||||||
seq2  CTCCAGTGCCTTATGTTTTGCAT-TGGCGCTACATATGCTATTGAAGTT  1043