BAC Information

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BAC

Clone NameB6Ng01-102E20
Chromosome19 (Build37)
Map Location 56,978,952 - 57,108,409
singlet/doubletdoublet
Overlap geneVwa2, Afap1l2
Upstream geneTcf7l2, LOC100043484, Habp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1
Downstream geneAblim1, EG668259, AI450540, Trub1, LOC100043038, Atrnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102E20.bB6Ng01-102E20.g
ACCDH911232DH911233
length1,1281,100
definitionDH911232|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E20, 5' end.DH911233|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,107,273 - 57,108,409)(56,978,952 - 56,980,063)
sequence
gaattcaaattaacttcctttgagtctttgttaaaagagaaaataaaaaa
atctcaagcaaacttggagtggcagtccagggcatgtcgcaggagcagga
gtggctccaagctgtgctctccatgaactctggctctggggagatttcta
gtaactcttcaatctgtactttctgtgcccgcctcggttttgagttgcat
tttttttttctgttgttagacaaaccagggctttgtatgcttgaagttca
ctgttttgtgcccccctttgaagaactttctatgcagaaatagatggtca
gggtttcggatttgcagtgatgtgtcttccggtggcaatggacagggaag
gagcacccatgtccactggaacgggagaacaagccttcggcatctacagg
gttactgtttgcattttctacccacaagcagaaggagacagtgacaatgg
gcagtggatagccctcactcgtgagtgtttaatgttgcagcaaactcacc
aagaaggagacaaatggctgtttcgaatggaagctttctcagcagacaat
gtgtgcacagtaaacttcagcagagtccacttgttctcccggaagcttaa
tgtaattgaatggcagttatcactaaataaaattcttttctgagtctctc
ccgagagtggcagtcctttgaatcgcttcccagggtgaaagatggaaaga
gatgagcctaaggataccaggttcaaaacggttatgaccatacacacagg
cattttaccttatggaagaggagacagttgttcatggaattgatggggga
ggtagagggggtcctctaacaaatatgtctggtggtgaatgtgaaagctt
ccatgagatgccaaagaccctacatcgaatttcctttgaagaatggttca
cgggatttctgtccctgatgaaagactgcccattcaccttggttccctcc
cctgtggctaaacgaaagcaaatgtccggaagtctgagaagctgtgtcgt
gttccctgtgaaatgagttgatgtttgccagtgctgacacctggtattgg
agtacagaaggaggctctgcttgcagactgtgccgctgaacttgcgtgtt
ccagctgccctgttgcggacaggcgctc
gaattccccatgatgctcaagctgctagtatcagctgatcagactatctt
taatcacagtaatgtggctagtaaatggtaatatgctggtgttttgaaga
aaaaatgcttgccggtcctaatggtgacactctgagctagctattctgta
agcttgcacaagtgcaaaaagatactttgtgttctttgtgactttgggag
gaagaccatggggagggtgttaaacttcattttaataaatgataaggagc
agggaactcgagcagttcgtggctacagggtaccatcggccagacacttc
agaagggccttgctttggcgtttgctggctttcctgtgtttcacaccagc
cttgaggaggcatcacccacactatgcagtgcacattcaaaagcaaatgt
cttagcctctctccagagcgtttgcttcataccaggtggtcccacagatt
cctttgtgtccgctgattgtgggagaagtgtgaggaggacagagcttggg
aaaatgaattaagatggccacagaggcagaggtggctacgttcatcactg
ggctgcctgactgcccggcgtaaaagctcatggctctctgtgccatgagg
caggagccttaggcaaccccaggtcgattttgaacaaagagaggggccct
tcggcccacagccatgccctcgccttgttgctatggaggtcatcatcctt
agaaaactcaggtaaaacacaagtcagtcgttatggcaaccctgggcccc
tctgggccttctcagaagccttggataatgatggccagcatcctgatacc
acagagggagcacagcaacatggacccattggacccaattggcacggccc
taccaaggtcttccagctgcacggagtccctcctctgagtattcgctgtg
agagctttgctgctttccctaccagatggtgtgagcacacacggagcacc
cttcagtctgtactctgcctctctgcctgtcatcttggcttttaacggta
tctctctgtaggcccctgtgacctcagccctgccaaaatgaaggcacgtg
cattcagaagtgttgatagttaccactgtctctgccattgcattcgaggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_57107273_57108409
seq2: B6Ng01-102E20.b_42_1169 (reverse)

seq1  GAGCGGGCTGTCCGCAACAGAGGCAGCTGGGAACACGC-AGCTCAGCGGC  49
      |||| | ||||||||||||| ||||||| ||||||||| || ||||||| 
seq2  GAGC-GCCTGTCCGCAACAG-GGCAGCT-GGAACACGCAAGTTCAGCGG-  46

seq1  CACAGTGCCTGCAGGCGGAGCCCTCCTCTGTACCTCAATACCAGGTGCTC  99
      ||||||  ||||| || |||||  | |||||||  |||||||||||| ||
seq2  CACAGT--CTGCAAGCAGAGCCTCCTTCTGTACTCCAATACCAGGTG-TC  93

seq1  AGCACTGGCACACATCAACTCATTTCCACAGGGAACACGACACAGCTTCT  149
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AGCACTGGCAAACATCAACTCATTT-CACAGGGAACACGACACAGCTTCT  142

seq1  CAAGACTTCCGGACATTTGCTTTCGTTTAGCCACAAGGGGAGGGAACCAA  199
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  C-AGACTTCCGGACATTTGCTTTCGTTTAGCCAC-AGGGGAGGGAACCAA  190

seq1  GGTGAATGGGCAGTCTTTCATCAGGGACAGAAATCCCGTGAACCATTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGGGCAGTCTTTCATCAGGGACAGAAATCCCGTGAACCATTCTT  240

seq1  C-AAGGAAATTCGATGTAGGGTCTTTGGCATCTCATGGAAAGCTTTCACA  298
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAGGAAATTCGATGTAGGGTCTTTGGCATCTCATGG-AAGCTTTCACA  289

seq1  TTCACCACCAGACATATTTGTTAGAGGACCCCCTCTACCTCCCCCATCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACCAGACATATTTGTTAGAGGACCCCCTCTACCTCCCCCATCAA  339

seq1  TTCCATGAACAACTGTCTCCTCTTCCATAAGGTAAAATGCCTGTGTGTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAACAACTGTCTCCTCTTCCATAAGGTAAAATGCCTGTGTGTAT  389

seq1  GGTCATAACCGTTTTGAACCTGGTATCCTTAGGCTCATCTCTTTCCATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAACCGTTTTGAACCTGGTATCCTTAGGCTCATCTCTTTCCATCT  439

seq1  TTCACCCTGGGAAGCGATTCAAAGGACTGCCACTCTCGGGAGAGACTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCTGGGAAGCGATTCAAAGGACTGCCACTCTCGGGAGAGACTCAG  489

seq1  AAAAGAATTTTATTTAGTGATAACTGCCATTCAATTACATTAAGCTTCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTTTATTTAGTGATAACTGCCATTCAATTACATTAAGCTTCCG  539

seq1  GGAGAACAAGTGGACTCTGCTGAAGTTTACTGTGCACACATTGTCTGCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAAGTGGACTCTGCTGAAGTTTACTGTGCACACATTGTCTGCTG  589

seq1  AGAAAGCTTCCATTCGAAACAGCCATTTGTCTCCTTCTTGGTGAGTTTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTTCCATTCGAAACAGCCATTTGTCTCCTTCTTGGTGAGTTTGC  639

seq1  TGCAACATTAAACACTCACGAGTGAGGGCTATCCACTGCCCATTGTCACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACATTAAACACTCACGAGTGAGGGCTATCCACTGCCCATTGTCACT  689

seq1  GTCTCCTTCTGCTTGTGGGTAGAAAATGCAAACAGTAACCCTGTAGATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTCTGCTTGTGGGTAGAAAATGCAAACAGTAACCCTGTAGATGC  739

seq1  CGAAGGCTTGTTCTCCCGTTCCAGTGGACATGGGTGCTCCTTCCCTGTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCTTGTTCTCCCGTTCCAGTGGACATGGGTGCTCCTTCCCTGTCC  789

seq1  ATTGCCACCGGAAGACACATCACTGCAAATCCGAAACCCTGACCATCTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCACCGGAAGACACATCACTGCAAATCCGAAACCCTGACCATCTAT  839

seq1  TTCTGCATAGAAAGTTCTTCAAAGGGGGGCACAAAACAGTGAACTTCAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATAGAAAGTTCTTCAAAGGGGGGCACAAAACAGTGAACTTCAAG  889

seq1  CATACAAAGCCCTGGTTTGTCTAACAACAGAAAAAAAAAATGCAACTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAGCCCTGGTTTGTCTAACAACAGAAAAAAAAAATGCAACTCAA  939

seq1  AACCGAGGCGGGCACAGAAAGTACAGATTGAAGAGTTACTAGAAATCTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGGCGGGCACAGAAAGTACAGATTGAAGAGTTACTAGAAATCTCC  989

seq1  CCAGAGCCAGAGTTCATGGAGAGCACAGCTTGGAGCCACTCCTGCTCCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCAGAGTTCATGGAGAGCACAGCTTGGAGCCACTCCTGCTCCTG  1039

seq1  CGACATGCCCTGGACTGCCACTCCAAGTTTGCTTGAGATTTTTTTATTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATGCCCTGGACTGCCACTCCAAGTTTGCTTGAGATTTTTTTATTTT  1089

seq1  CTCTTTTAACAAAGACTCAAAGGAAGTTAATTTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAACAAAGACTCAAAGGAAGTTAATTTGAATTC  1128

seq1: chr19_56978952_56980063
seq2: B6Ng01-102E20.g_66_1165

seq1  GAATTCCCCATGATGCTCAAGCTGCTAGTATCAGCTGATCAGACTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATGATGCTCAAGCTGCTAGTATCAGCTGATCAGACTATCTT  50

seq1  TAATCACAGTAATGTGGCTAGTAAATGGTAATATGCTGGTGTTTTGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACAGTAATGTGGCTAGTAAATGGTAATATGCTGGTGTTTTGAAGA  100

seq1  AAAAATGCTTGCCGGTCCTAATGGTGACACTCTGAGCTAGCTATTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTTGCCGGTCCTAATGGTGACACTCTGAGCTAGCTATTCTGTA  150

seq1  AGCTTGCACAAGTGCAAAAAGATACTTTGTGTTCTTTGTGACTTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCACAAGTGCAAAAAGATACTTTGTGTTCTTTGTGACTTTGGGAG  200

seq1  GAAGACCATGGGGAGGGTGTTAAACTTCATTTTAATAAATGATAAGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCATGGGGAGGGTGTTAAACTTCATTTTAATAAATGATAAGGAGC  250

seq1  AGGGAACTCGAGCAGTTCGTGGCTACAGGGTACCATCGGCCAGACACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTCGAGCAGTTCGTGGCTACAGGGTACCATCGGCCAGACACTTC  300

seq1  AGAAGGGCCTTGCTTTGGCGTTTGCTGGCTTTCCTGTGTTTCACACCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCCTTGCTTTGGCGTTTGCTGGCTTTCCTGTGTTTCACACCAGC  350

seq1  CTTGAGGAGGCATCACCCACACTATGCAGTGCACATTCAAAAGCAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAGGCATCACCCACACTATGCAGTGCACATTCAAAAGCAAATGT  400

seq1  CTTAGCCTCTCTCCAGAGCGTTTGCTTCATACCAGGTGGTCCCACAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTCTCTCCAGAGCGTTTGCTTCATACCAGGTGGTCCCACAGATT  450

seq1  CCTTTGTGTCCGCTGATTGTGGGAGAAGTGTGAGGAGGACAGAGCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTCCGCTGATTGTGGGAGAAGTGTGAGGAGGACAGAGCTTGGG  500

seq1  AAAATGAATTAAGATGGCCACAGAGGCAGAGGTGGCTACGTTCATCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATTAAGATGGCCACAGAGGCAGAGGTGGCTACGTTCATCACTG  550

seq1  GGCTGCCTGACTGCCCGGCGTAAAAGCTCATGGCTCTCTGTGCCATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTGACTGCCCGGCGTAAAAGCTCATGGCTCTCTGTGCCATGAGG  600

seq1  CAGGAGCCTTAGGCAACCCCAGGTCGATTTTGAACAAAGAGAGGGGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCTTAGGCAACCCCAGGTCGATTTTGAACAAAGAGAGGGGCCCT  650

seq1  TCGGCCCACAGCCATGCCCTCGCCTTGTTGCTATGGAGGTCATCATCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCCACAGCCATGCCCTCGCCTTGTTGCTATGGAGGTCATCATCCTT  700

seq1  AGAAAACTCAGGTAAAACACAAGTCAGTCGTTATGGCAACCCTGGGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTCAGGTAAAACACAAGTCAGTCGTTATGGCAACCCTGGGCCCC  750

seq1  TCTGGGCCTTCTCAGAAGCCTTGGATAATGATGGCCAGCATCCTGATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCTTCTCAGAAGCCTTGGATAATGATGGCCAGCATCCTGATACC  800

seq1  ACAGAGGGAGCACAGCAACATGGACCCATTGGACCCAATTGGCACGGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAGAGGGAGCACAGCAACATGGACCCATTGGACCCAATTGGCAC-GGCC  849

seq1  CTACCAAGGTCTTCCAGCTGCACGGAGTCCCTCCTCTGAGTATTCGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGGTCTTCCAGCTGCACGGAGTCCCTCCTCTGAGTATTCGCTGT  899

seq1  GAGAGCTTTGCTGCTTTCCCTACCAGATGGTGTGAGCACAACACCGGAGC  950
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  GAGAGCTTTGCTGCTTTCCCTACCAGATGGTGTGAGCAC-ACA-CGGAGC  947

seq1  AACCTTCAGTCTGTACTCTGCCCTCTCTGCCTGTCATCTTGGCTTTTAAC  1000
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCCTTCAGTCTGTACTCTG-CCTCTCTGCCTGTCATCTTGGCTTTTAAC  996

seq1  GGGTATCTCTCTGGTAGGCCCCTGTGACTCCCAGCCCTGCCAAAATGGAG  1050
       ||||||||||| ||||||||||||||| | |||||||||||||||| ||
seq2  -GGTATCTCTCT-GTAGGCCCCTGTGAC-CTCAGCCCTGCCAAAATGAAG  1043

seq1  GCACGTGCATTCCAGAAGGTGTGGATAGGTACCACTGTCTCTGCCCACTG  1100
      ||||||||||| ||||| |||| ||||| ||||||||||||||||   | 
seq2  GCACGTGCATT-CAGAA-GTGTTGATAGTTACCACTGTCTCTGCC--ATT  1089

seq1  GCATTCGGAGGG  1112
      |||||| |||||
seq2  GCATTC-GAGGG  1100