BAC Information

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BAC

Clone NameB6Ng01-102G21
Chromosome19 (Build37)
Map Location 4,445,237 - 4,542,664
singlet/doubletdoublet
Overlap geneSyt12, 2010003K11Rik
Upstream geneSaps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod
Downstream genePcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102G21.bB6Ng01-102G21.g
ACCDH911327DH911328
length8021,149
definitionDH911327|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G21, 5' end.DH911328|Mus musculus domesticus DNA, BAC clone: B6Ng01-102G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,445,237 - 4,446,038)(4,541,208 - 4,542,664)
sequence
gaattcttagcttgcttatgagctcctggggaggaaaagaagaggaagac
gtatgttgggatccagagggttctccgctgcccttcaggggctttcgagg
aattggaaaaagatcacgtgtcctgggtgtcaagagcatgggctctccaa
ctgtataccctgaacttgatcataaatctgcgactttcttgctgtgtgat
cttaggcctgctacttaacttctctgagctctggtttctacatctccaca
aggagaatgccatagttgcctgcctttaagtgcttctgggctgcagcctg
agcaccaattctcaacgaccttgtaaagcccttttcccactcctggtctg
tgttctgcaccctaccccggattcccgtcccctcccagtgtgctagaaag
gcaaagaattctacccaatgcttgtcccttcctgcactgtgatgtgctgt
tactaggaatgcgtttcctgctttacatatgagtactcttcagtgtcacc
accaggaagccttccttgacttctccatcccctccttccccaaccagggc
tggtactggggttcctcttcagagccccccttaccagcaatgaaggagga
caccgtgcccctgtggggcccaaggttgagacccagtaaaatgactggag
gctgagcagggctccctgtatgcctccttcctgccccagttttattttgt
ttcaagaatcatccctggctgccaccacagccatctgggcacactgtttc
atgcagtatagaaggaaggaaagaaggaataaggggatggagggtggggg
gt
gaattccaactcaagatatagctcagcagtacagtgctagcctgctggcc
tagcatatgtacaggaggtgccacaaagcaaaaaataaataaatgaaaag
aaaagacccacagggaaaagtgaaagaggggagggaacataagaaaagaa
tacaatggaaaagcagtaggctttctggaagaaagctgtttcattgtttt
agagcaatcaccagtgcagtagaactctatagaaacaggaacactgagaa
ataatatttagatcccaagattacaccaggggaggtttatggcaacccag
gagaaacataagaaacagaaagctgcccctcattctggtgtgtctaatga
gcagcctttgagcctccctgggctgaggtggcagtgttctggcccaccca
tgtggaaccacagcagcccagaaccagatcacaggtaggtactagggaag
gcttaaggcaccacaaaaagatggcatctggaggtatgtagaagacaaca
ggtagcctttttaatagcagatgtgaatactatgtaaattgtttttagaa
aacaagaatgaggctataatgaaagtaacagtgaccagagtaacaacaaa
ggctttccaagtctacccaggaatgcaaaaaatgtggaattattatggga
atttcagaaattaaaaggcaaagacagctggaaacaagcactaagacttt
gcaacaaaggacaagagagatcagggtttgatgtgtgttggggtaacctt
ttttcacattgtgtgaagatgtgtctctgtgtttccaattctcattaaac
tacctcattaaaccaaatccctcagacacttcccagtcattgcctgtgtg
ctagcctgctctctaagcaatctgcccatactgcccaaagctagaactga
ttgagccccaagaccaggccagagcaacataggccaaattaaccaaccac
agatcttaaaacccgagggttgatggaaccaatgactccaagttctcact
aaaattcagaagtccatgacatgtgagaatcagacttcaggaccaaattt
gcagttctacaatttcttgggtgaaacctggcagctgcctcccaactaat
atttctgtgaaggggcctgcttcgatgttttcaggtgtgaacctgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4445237_4446038
seq2: B6Ng01-102G21.b_44_845

seq1  GAATTCTTAGCTTGCTTATGAGCTCCTGGGGAGGAAAAGAAGAGGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCTTGCTTATGAGCTCCTGGGGAGGAAAAGAAGAGGAAGAC  50

seq1  GTATGTTGGGATCCAGAGGGTTCTCCGCTGCCCTTCAGGGGCTTTCGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTGGGATCCAGAGGGTTCTCCGCTGCCCTTCAGGGGCTTTCGAGG  100

seq1  AATTGGAAAAAGATCACGTGTCCTGGGTGTCAAGAGCATGGGCTCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAAAAGATCACGTGTCCTGGGTGTCAAGAGCATGGGCTCTCCAA  150

seq1  CTGTATACCCTGAACTTGATCATAAATCTGCGACTTTCTTGCTGTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACCCTGAACTTGATCATAAATCTGCGACTTTCTTGCTGTGTGAT  200

seq1  CTTAGGCCTGCTACTTAACTTCTCTGAGCTCTGGTTTCTACATCTCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCCTGCTACTTAACTTCTCTGAGCTCTGGTTTCTACATCTCCACA  250

seq1  AGGAGAATGCCATAGTTGCCTGCCTTTAAGTGCTTCTGGGCTGCAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGCCATAGTTGCCTGCCTTTAAGTGCTTCTGGGCTGCAGCCTG  300

seq1  AGCACCAATTCTCAACGACCTTGTAAAGCCCTTTTCCCACTCCTGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAATTCTCAACGACCTTGTAAAGCCCTTTTCCCACTCCTGGTCTG  350

seq1  TGTTCTGCACCCTACCCCGGATTCCCGTCCCCTCCCAGTGTGCTAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGCACCCTACCCCGGATTCCCGTCCCCTCCCAGTGTGCTAGAAAG  400

seq1  GCAAAGAATTCTACCCAATGCTTGTCCCTTCCTGCACTGTGATGTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAATTCTACCCAATGCTTGTCCCTTCCTGCACTGTGATGTGCTGT  450

seq1  TACTAGGAATGCGTTTCCTGCTTTACATATGAGTACTCTTCAGTGTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGAATGCGTTTCCTGCTTTACATATGAGTACTCTTCAGTGTCACC  500

seq1  ACCAGGAAGCCTTCCTTGACTTCTCCATCCCCTCCTTCCCCAACCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAAGCCTTCCTTGACTTCTCCATCCCCTCCTTCCCCAACCAGGGC  550

seq1  TGGTACTGGGGTTCCTCTTCAGAGCCCCCCTTACCAGCAATGAAGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGGGGTTCCTCTTCAGAGCCCCCCTTACCAGCAATGAAGGAGGA  600

seq1  CACCGTGCCCCTGTGGGGCCCAAGGTTGAGACCCAGTAAAATGACTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGCCCCTGTGGGGCCCAAGGTTGAGACCCAGTAAAATGACTGGAG  650

seq1  GCTGAGCAGGGCTCCCTGTATGCCTCCTTCCTGCCCCAGTTTTATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAGGGCTCCCTGTATGCCTCCTTCCTGCCCCAGTTTTATTTTGT  700

seq1  TTCAAGAATCATCCCTGGCTGCCACCACAGCCATCTGGGCACACTGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAATCATCCCTGGCTGCCACCACAGCCATCTGGGCACACTGTTTC  750

seq1  ATGCAGTATAGAAGGAAGGAAAGAAGGAATAAGGGGATGGAGGGTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTATAGAAGGAAGGAAAGAAGGAATAAGGGGATGGAGGGTGGGGG  800

seq1  GT  802
      ||
seq2  GT  802

seq1: chr19_4541208_4542664
seq2: B6Ng01-102G21.g_66_1214 (reverse)

seq1  AGCTCAGGTTTCCCTGGTTCTGCAAGGAGCCTCAGGATAAAAGTTACAAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTACCTGCCTCTGGGTTTCTGCCTCTTCTTAGGTGTCCGCCTGAGAAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTATTTCCTTGCTGACTTGTTTATTCTTTTAAGAAGTATGTGTATGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGTGTGCCCCTCTTCTCAATACATATATTTTACCCACAGTTTTTTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGTAGGAAGGATGGACAGTCACTTATATAGCTGTCTGGAAAGCTTCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTTGCCTTTGAAGGCCATGGGACCCCGTGTCTTACAGCTCTGGTTTCC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCCAGGAGCCTCCAGCTCACACCTG--AACATCGAAGCA-GCCCCCT  347
               || |||  | |||||||||  |||||||||||| ||||| |
seq2  ---------AG-CTCAGGTTCACACCTGAAAACATCGAAGCAGGCCCCTT  40

seq1  CACAGGAATAT--GGTGGGA-GCAGCTGGCAGGGTTTCCACCCA--GAAT  392
      ||||| |||||  | ||||| ||||||| ||||  || ||||||   |||
seq2  CACAGAAATATTAGTTGGGAGGCAGCTGCCAGG--TTTCACCCAAGAAAT  88

seq1  TGTAGAACTGCAAATTTTGGGTCTGGAAGTCTGATTCTCACATGTCATGG  442
      |||||||||||||||||  ||||  |||||||||||||||||||||||||
seq2  TGTAGAACTGCAAATTT--GGTCCTGAAGTCTGATTCTCACATGTCATGG  136

seq1  ACTTCTGAATTTTAGTGAG-ACTTGGAGTCATTGGGTTCCATCCACCCCT  491
      ||||||||||||||||||| ||||||||||||| |||||||| || ||||
seq2  ACTTCTGAATTTTAGTGAGAACTTGGAGTCATT-GGTTCCAT-CAACCCT  184

seq1  CGGGTTTTAAAGATCTGTGGTTGGTTAATTTGGCCTATGTTGCTCTGGCC  541
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTTT-AAGATCTGTGGTTGGTTAATTTGGCCTATGTTGCTCTGGCC  233

seq1  TGGTCTTGGGGCTCAATCAGTTCTAGCTTTGGGCAGTATGGGCAGATTGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGGGGCTCAATCAGTTCTAGCTTTGGGCAGTATGGGCAGATTGC  283

seq1  TTAGAGAGCAGGCTAGCACACAGGCAATGACTGGGAAGTGTCTGAGGGAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGCAGGCTAGCACACAGGCAATGACTGGGAAGTGTCTGAGGGAT  333

seq1  TTGGTTTAATGAGGTAGTTTAATGAGAATTGGAAACACAGAGACACATCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTAATGAGGTAGTTTAATGAGAATTGGAAACACAGAGACACATCT  383

seq1  TCACACAATGTGAAAAAAGGTTACCCCAACACACATCAAACCCTGATCTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATGTGAAAAAAGGTTACCCCAACACACATCAAACCCTGATCTC  433

seq1  TCTTGTCCTTTGTTGCAAAGTCTTAGTGCTTGTTTCCAGCTGTCTTTGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCTTTGTTGCAAAGTCTTAGTGCTTGTTTCCAGCTGTCTTTGCC  483

seq1  TTTTAATTTCTGAAATTCCCATAATAATTCCACATTTTTTGCATTCCTGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTCTGAAATTCCCATAATAATTCCACATTTTTTGCATTCCTGG  533

seq1  GTAGACTTGGAAAGCCTTTGTTGTTACTCTGGTCACTGTTACTTTCATTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTGGAAAGCCTTTGTTGTTACTCTGGTCACTGTTACTTTCATTA  583

seq1  TAGCCTCATTCTTGTTTTCTAAAAACAATTTACATAGTATTCACATCTGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCATTCTTGTTTTCTAAAAACAATTTACATAGTATTCACATCTGC  633

seq1  TATTAAAAAGGCTACCTGTTGTCTTCTACATACCTCCAGATGCCATCTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAAGGCTACCTGTTGTCTTCTACATACCTCCAGATGCCATCTTT  683

seq1  TTGTGGTGCCTTAAGCCTTCCCTAGTACCTACCTGTGATCTGGTTCTGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGCCTTAAGCCTTCCCTAGTACCTACCTGTGATCTGGTTCTGGG  733

seq1  CTGCTGTGGTTCCACATGGGTGGGCCAGAACACTGCCACCTCAGCCCAGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGGTTCCACATGGGTGGGCCAGAACACTGCCACCTCAGCCCAGG  783

seq1  GAGGCTCAAAGGCTGCTCATTAGACACACCAGAATGAGGGGCAGCTTTCT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAAAGGCTGCTCATTAGACACACCAGAATGAGGGGCAGCTTTCT  833

seq1  GTTTCTTATGTTTCTCCTGGGTTGCCATAAACCTCCCCTGGTGTAATCTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATGTTTCTCCTGGGTTGCCATAAACCTCCCCTGGTGTAATCTT  883

seq1  GGGATCTAAATATTATTTCTCAGTGTTCCTGTTTCTATAGAGTTCTACTG  1241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTAAATATTATTTCTCAGTGTTCCTGTTTCTATAGAGTTCTACTG  933

seq1  CACTGGTGATTGCTCTAAAACAATGAAACAGCTTTCTTCCAGAAAGCCTA  1291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGATTGCTCTAAAACAATGAAACAGCTTTCTTCCAGAAAGCCTA  983

seq1  CTGCTTTTCCATTGTATTCTTTTCTTATGTTCCCTCCCCTCTTTCACTTT  1341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCATTGTATTCTTTTCTTATGTTCCCTCCCCTCTTTCACTTT  1033

seq1  TCCCTGTGGGTCTTTTCTTTTCATTTATTTATTTTTTGCTTTGTGGCACC  1391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGGGTCTTTTCTTTTCATTTATTTATTTTTTGCTTTGTGGCACC  1083

seq1  TCCTGTACATATGCTAGGCCAGCAGGCTAGCACTGTACTGCTGAGCTATA  1441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACATATGCTAGGCCAGCAGGCTAGCACTGTACTGCTGAGCTATA  1133

seq1  TCTTGAGTTGGAATTC  1457
      ||||||||||||||||
seq2  TCTTGAGTTGGAATTC  1149