BAC Information

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BAC

Clone NameB6Ng01-103A20
Chromosome19 (Build37)
Map Location 31,639,822 - 31,827,491
singlet/doubletdoublet
Overlap genePrkg1
Upstream geneLOC625995, Cstf2t, 8430431K14Rik
Downstream gene1810073H04Rik, Asah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103A20.bB6Ng01-103A20.g
ACCDH911763DH911764
length1,1361,195
definitionDH911763|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A20, 5' end.DH911764|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,639,822 - 31,640,966)(31,826,296 - 31,827,491)
sequence
gaattcaagggtttaatgtaagccaaataaccataataatttgcaatcaa
attatttactcgtgatttgtattcacatattttcattctagcccacagat
atttaaacagaacatcccatttagcctccaaacgatagcctttcaaataa
aataaccttctttattttttccaattagctggcttgtgtttcttaattat
tttattgtgtactttgatttgtcacttcattcaacaaaatattttgagac
acctaggatgtgaggaccacgattacttacaaatcccagtccttactgtg
aatacagctaaaaaggaagctaaattacccaaacaatcaccaaaaatgag
agatcttactgagggtacagattgcagaaacccatccctagagatctatc
ttaagaagacttcaggagaatctgaactttcatttctaagatgtccagaa
gctacaggaaccaaatgtagaagctgcacatcaatggggcaggaatcata
cttcaggaaccaatgaacctgagtaacaggaacagggagaagtagaaaat
agctgtcagaaatgaaatctctgaagttgaatggaagagattatgtcggc
catgaaaactgggaaagactttgaatgaggttctcacgttttctaccttc
tgggaggaaagtatctcatttgtgtaaacattacaagtgatgttttgata
aatttatcactgaaaacaatttaagtgaaagtataaaactctgcttgttg
gaaataaatagcaactattacatcaaaatagcaacaattacatcaagagt
cccaatttttattatttttaaaactaaattgtattatacacacattttcc
cttttattgaaaccaattcttttctcatacaatatatcctgattttacaa
catttgtcaccaaacaaagcttccagtactggggctgggttataaccaat
tgagttgtgggtgaaatgggtgccatgcagatccccagccaccccagcat
actaagtctatcgattgctcacataaactgagaacaaggcccattgctaa
atctcacttttaatacacaggtattatacagagatttgctttattttatt
gggtaggcataaaacatacatatgggaggaatcctt
gaattctttcacacacagattgtgtgactttacataaactacttgtttcc
ttgaagttgattttgactcttttgcaaagacatggatggcgtttcctgta
agcttcatgtgcagatatgggccagggctgtgtgtgaattcatggtaagc
ataaagctctcagtggatcactagctctcccgtaagaaaacctttacagg
ggcagaaggcttccccaacaatttgcttttggaagtcactactgcccaga
atcgattttaggaaatatcctgttcacccttgtggattaacaaacaaaca
ttgtgacaaacaaacgggagatctggaggttttaaaggaatctgatgtgc
caaccacagacgcttgttagtgactgatctgtggttagatggcaagtccc
ttatgtctcctatactcacccctttgaaaagtatcttaaacataacacta
agtgaaccaagggagaggaggtgtgtgtaaactgaaacaggacaagcaga
gatgacaagataaggtgctgtaaccgtgtcctaataaaatgtaaatgcgt
acatataaatatatatatatatatacacacatatacatatacacatacat
ggatatgtttatacacatatacagtttgacttagtgatgcaaattacatg
gactgctcattgccagttgtacacccctctaactctagaagattctagaa
aagctgcttctcgaagactagaggcttaaaggaattattgccacacattg
cttatgagggatagcagtaaagcagggatgctgagggactgcttgcgtca
gatttagggagggacacagaagtgccggaagggttgtttagagagcatgt
cctgcatagctgagacatgactgcagccacactgtggaatagttgcactt
tcttgcttggttccttattttccagctttgtccttctgtctctcattatc
tatgtgtgcaggcatgctctgaattgccaacagtggcattgcaggattgc
agaaaaggactaggggtatgcagcttatccctcacagcacagttagatgc
ttgtcttcgtactgacagtcatggggaagaacgctcttaactgaatgctc
ttggcgagaattcctattcctagttacctttaggcttggttctttggaga
agtcagctgcttgccagattagactaatttttcattacacctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31639822_31640966
seq2: B6Ng01-103A20.b_40_1175

seq1  GAATTCAAGGGTTTAATGTAAGCCAAATAACCATAATAATTTGCAATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGTTTAATGTAAGCCAAATAACCATAATAATTTGCAATCAA  50

seq1  ATTATTTACTCGTGATTTGTATTCACATATTTTCATTCTAGCCCACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACTCGTGATTTGTATTCACATATTTTCATTCTAGCCCACAGAT  100

seq1  ATTTAAACAGAACATCCCATTTAGCCTCCAAACGATAGCCTTTCAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACAGAACATCCCATTTAGCCTCCAAACGATAGCCTTTCAAATAA  150

seq1  AATAACCTTCTTTATTTTTTCCAATTAGCTGGCTTGTGTTTCTTAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTTCTTTATTTTTTCCAATTAGCTGGCTTGTGTTTCTTAATTAT  200

seq1  TTTATTGTGTACTTTGATTTGTCACTTCATTCAACAAAATATTTTGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTGTACTTTGATTTGTCACTTCATTCAACAAAATATTTTGAGAC  250

seq1  ACCTAGGATGTGAGGACCACGATTACTTACAAATCCCAGTCCTTACTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGATGTGAGGACCACGATTACTTACAAATCCCAGTCCTTACTGTG  300

seq1  AATACAGCTAAAAAGGAAGCTAAATTACCCAAACAATCACCAAAAATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCTAAAAAGGAAGCTAAATTACCCAAACAATCACCAAAAATGAG  350

seq1  AGATCTTACTGAGGGTACAGATTGCAGAAACCCATCCCTAGAGATCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTACTGAGGGTACAGATTGCAGAAACCCATCCCTAGAGATCTATC  400

seq1  TTAAGAAGACTTCAGGAGAATCTGAACTTTCATTTCTAAGATGTCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGACTTCAGGAGAATCTGAACTTTCATTTCTAAGATGTCCAGAA  450

seq1  GCTACAGGAACCAAATGTAGAAGCTGCACATCAATGGGGCAGGAATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGAACCAAATGTAGAAGCTGCACATCAATGGGGCAGGAATCATA  500

seq1  CTTCAGGAACCAATGAACCTGAGTAACAGGAACAGGGAGAAGTAGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAACCAATGAACCTGAGTAACAGGAACAGGGAGAAGTAGAAAAT  550

seq1  AGCTGTCAGAAATGAAATCTCTGAAGTTGAATGGAAGAGATTATGTCGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGAAATGAAATCTCTGAAGTTGAATGGAAGAGATTATGTCGGC  600

seq1  CATGAAAACTGGGAAAGACTTTGAATGAGGTTCTCACGTTTTCTACCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAACTGGGAAAGACTTTGAATGAGGTTCTCACGTTTTCTACCTTC  650

seq1  TGGGAGGAAAGTATCTCATTTGTGTAAACATTACAAGTGATGTTTTGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAAAGTATCTCATTTGTGTAAACATTACAAGTGATGTTTTGATA  700

seq1  AATTTATCACTGAAAACAATTTAAGTGAAAGTATAAAACTCTGCTTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCACTGAAAACAATTTAAGTGAAAGTATAAAACTCTGCTTGTTG  750

seq1  GAAATAAATAGCAACTATTACATCAAAATAGCAACAATTACATCAAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATAGCAACTATTACATCAAAATAGCAACAATTACATCAAGAGT  800

seq1  CCCAATTTTTATTATTTTTAAAACTAAATTGTATTATACACACATTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTTTATTATTTTTAAAACTAAATTGTATTATACACACATTTTCC  850

seq1  CTTTTATTGAAACCAATTCTTTTCTCATACAATATATCCTGATTTTACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGAAACCAATTCTTTTCTCATACAATATATCCTGATTTTACAA  900

seq1  CATTTGTCACCAAACAAAGCTTCCAGTACTGGGGCTGGGTTATAACCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCACCAAACAAAGCTTCCAGTACTGGGGCTGGGTTATAACCAAT  950

seq1  TGAGTTGTGGGTGAAATGGGTGCCATGCAGATCCCCAGCCAACCCCAGCA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAGTTGTGGGTGAAATGGGTGCCATGCAGATCCCCAGCC-ACCCCAGCA  999

seq1  ATTACTAAGTCTATCGATTGCTCACCATAAACTGAGAACAAGGCCCCATT  1050
        |||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  --TACTAAGTCTATCGATTGCTCA-CATAAACTGAGAACAAGG-CCCATT  1045

seq1  GCTAAATCTCACTTTTAATACACAGGTATTATACCAAGAAGATTTTGCTA  1100
      ||||||||||||||||||||||||||||||||||  |||    |||||| 
seq2  GCTAAATCTCACTTTTAATACACAGGTATTATACAGAGA----TTTGCTT  1091

seq1  TATATTTATTGGTAAAGCAT-AAACATACATATGGAGGAAATCCTT  1145
      ||| ||||||||  | |||| ||||||||||||||  | |||||||
seq2  TAT-TTTATTGGGTAGGCATAAAACATACATATGGGAGGAATCCTT  1136

seq1: chr19_31826296_31827491
seq2: B6Ng01-103A20.g_65_1259 (reverse)

seq1  CTCAGATGTAATGAAAAATTAGTCTCTAAACT-GCAAGCAGGCACTGGGA  49
      ||||| ||||||||||||||||  ||||| || ||||||||   |||   
seq2  CTCAGGTGTAATGAAAAATTAG--TCTAATCTGGCAAGCAG---CTGACT  45

seq1  ACTCTCAAAGGTACAAGCTTAAAGGTAACTAGAGATAGGGATACACGCC-  98
       ||| |||||   ||||| |||||||||||||  ||||| || | |||| 
seq2  TCTC-CAAAGAACCAAGCCTAAAGGTAACTAGGAATAGGAATTCTCGCCA  94

seq1  AGAGCATTCAG-TAAGAGCGTTCTTCCCCATGGCTGTCAGGTACGGAGAC  147
      ||||||||||| |||||||||||||||||||| |||||| ||||| ||||
seq2  AGAGCATTCAGTTAAGAGCGTTCTTCCCCATGACTGTCA-GTACGAAGAC  143

seq1  AGGCATCT-ACTGTGCTGTG-GGGAT-AGCTGCATGGCCCCTAGTTC-TT  193
      | |||||| ||||||||||| ||||| ||||||||  |||||||| | ||
seq2  AAGCATCTAACTGTGCTGTGAGGGATAAGCTGCAT-ACCCCTAGTCCTTT  192

seq1  TCTGCAATCCTGCAATGCCACTGGTTGGCAATTCAGAGCATGCCTGCACA  243
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGCAATCCTGCAATGCCACT-GTTGGCAATTCAGAGCATGCCTGCACA  241

seq1  CATAGATAATGAGAGGACAGAAGGACAAAGCTGGAAAATAAGGAACCAAG  293
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATAGATAATGAGA-GACAGAAGGACAAAGCTGGAAAATAAGGAACCAAG  290

seq1  CAAGAAAGTGCAACTA-TCCACAGTGTGGCTGCAGTCATGTCCCAGCTAT  342
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CAAGAAAGTGCAACTATTCCACAGTGTGGCTGCAGTCATGTCTCAGCTAT  340

seq1  GCAGGACATGCTCTCTAAGCAACCCTTCCGGCACTTCTGTGT-CCTTCCT  391
      |||||||||||||||||| ||||||||||||||||||||||| ||| |||
seq2  GCAGGACATGCTCTCTAAACAACCCTTCCGGCACTTCTGTGTCCCTCCCT  390

seq1  AAATCTGACGCAAGCAGTCCCTCAGCATCCCTGCTTTACTGCTATCCCTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGACGCAAGCAGTCCCTCAGCATCCCTGCTTTACTGCTATCCCTC  440

seq1  ATAAGCAATGTGTGGCAATAATTCCTTTAAGCCTCTAGTCTTCGAGAAGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAATGTGTGGCAATAATTCCTTTAAGCCTCTAGTCTTCGAGAAGC  490

seq1  AGCTTTTCTAGAATCTTCTAGAGTTAGAGGGGTGTACAACTGGCAATGAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCTAGAATCTTCTAGAGTTAGAGGGGTGTACAACTGGCAATGAG  540

seq1  CAGTCCATGTAATTTGCATCACTAAGTCAAACTGTATATGTGTATAAACA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCATGTAATTTGCATCACTAAGTCAAACTGTATATGTGTATAAACA  590

seq1  TATCCATGTATGTGTATATGTATATGTGTGTATATATATATATATATTTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGTATGTGTATATGTATATGTGTGTATATATATATATATATTTA  640

seq1  TATGTACGCATTTACATTTTATTAGGACACGGTTACAGCACCTTATCTTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACGCATTTACATTTTATTAGGACACGGTTACAGCACCTTATCTTG  690

seq1  TCATCTCTGCTTGTCCTGTTTCAGTTTACACACACCTCCTCTCCCTTGGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGCTTGTCCTGTTTCAGTTTACACACACCTCCTCTCCCTTGGT  740

seq1  TCACTTAGTGTTATGTTTAAGATACTTTTCAAAGGGGTGAGTATAGGAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGTGTTATGTTTAAGATACTTTTCAAAGGGGTGAGTATAGGAGA  790

seq1  CATAAGGGACTTGCCATCTAACCACAGATCAGTCACTAACAAGCGTCTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGACTTGCCATCTAACCACAGATCAGTCACTAACAAGCGTCTGT  840

seq1  GGTTGGCACATCAGATTCCTTTAAAACCTCCAGATCTCCCGTTTGTTTGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCACATCAGATTCCTTTAAAACCTCCAGATCTCCCGTTTGTTTGT  890

seq1  CACAATGTTTGTTTGTTAATCCACAAGGGTGAACAGGATATTTCCTAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTTTGTTTGTTAATCCACAAGGGTGAACAGGATATTTCCTAAAA  940

seq1  TCGATTCTGGGCAGTAGTGACTTCCAAAAGCAAATTGTTGGGGAAGCCTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTCTGGGCAGTAGTGACTTCCAAAAGCAAATTGTTGGGGAAGCCTT  990

seq1  CTGCCCCTGTAAAGGTTTTCTTACGGGAGAGCTAGTGATCCACTGAGAGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGTAAAGGTTTTCTTACGGGAGAGCTAGTGATCCACTGAGAGC  1040

seq1  TTTATGCTTACCATGAATTCACACACAGCCCTGGCCCATATCTGCACATG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTTACCATGAATTCACACACAGCCCTGGCCCATATCTGCACATG  1090

seq1  AAGCTTACAGGAAACGCCATCCATGTCTTTGCAAAAGAGTCAAAATCAAC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTACAGGAAACGCCATCCATGTCTTTGCAAAAGAGTCAAAATCAAC  1140

seq1  TTCAAGGAAACAAGTAGTTTATGTAAAGTCACACAATCTGTGTGTGAAAG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAAACAAGTAGTTTATGTAAAGTCACACAATCTGTGTGTGAAAG  1190

seq1  AATTC  1196
      |||||
seq2  AATTC  1195