BAC Information

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BAC

Clone NameB6Ng01-103C07
Chromosome19 (Build37)
Map Location 44,844,071 - 45,024,224
singlet/doubletdoublet
Overlap genePax2, LOC383450, LOC100042752, 6030443O07Rik
Upstream geneAbcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
Downstream geneSema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103C07.bB6Ng01-103C07.g
ACCDH911827DH911828
length1,146924
definitionDH911827|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C07, 5' end.DH911828|Mus musculus domesticus DNA, BAC clone: B6Ng01-103C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,023,074 - 45,024,224)(44,844,071 - 44,845,010)
sequence
gaattccagagtatgctgaagaccagctgagacatccaacctcttggatt
gaataactggacttctgaaccttccttttgtagacagccattgttggagt
agccagatcatagcctgtaaaccattttaccaaatcccctttctatacct
acagattcacgttacaagttctgttcctctagaccaatggttctcaacct
tcctagtgctgtgaccttttaatacagtcccccaaggtatagtgacccca
accataaagtcacccttgtagctactcataactctagttttactacctgt
gttatccaatggtcttaggtgattcctaaaggggtcacgcctcacaggct
acaccactctagggcacctgactagtatacctgcatgcatgtctggtgtc
tgcagggtcagaacaatgtcaatccttgggaactggagttatgtagcgtt
gtgagctaccatgcaggtgtggggaattgaacctgggtcctctgcaagag
cagttaagtgctcttaaccattgagctatctttccagcccttagaacaaa
tttttatacagggaaaaaaaatccaaacatttatgatttacttacttgag
aataagcttttccacagcactttctccaataaaaccagagtctcttaaat
ctaaggtatactgattgaaaatttttccagaattgaggaaattaaatatt
tcttcacctggatgatgatcaggaatagcatcaactgtaactgaaaattt
ctttagaaattccctgaaatacaaggatcattgaatatcaaagagttagg
acacacatgattttgtacttaaaatatgaaggcaaaacacttggcaaact
ctgaagaatcagcatttgtgtgagctttttttcccccccccatttatcta
tttattttatgtatatgagtacactgttgctgtcttcagacacaccagaa
gaaggcatcagatcccattacagatggttgtgagccaccatgtagttgct
gggaattaaactcagacctctggaagagcagtcagtgctctgaaccgctg
agcatctcttcagccttgtggggtgcttttttttgagacagagtttctct
gtgcagtctgtctgaaactggctctgtagaacagacttactcaaat
gaattctctgggtctcatacttacacaacaaactcttcacccaccgaggc
atctctccagcccctcccctgacgttgtaggttctaggcgttgaactcag
ggtttcaggcttgtgtggcaagagtctttacctggtgggatatctttttt
tttttttttttttttttggtttttcgagacagggtttctctgtgtagccc
tggctgacctggaacttactctgtaaaccaggctggcctcaaactcaaaa
atctgcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccacc
actgcccagccctggtgggttatcttgcaggaccccaaaagacaaatttt
ttaccaactccatgctaaccaagtaaagtgcattttgggtctgattctat
gttgggcagcagttggcagcctctggtctgtgtaactctacacactgatc
tctggtctaggaaagagctatgacctcaaagtaagtgtgagagaaccagc
tttccccctacaccttaatacagaagcttctgggatgcccatggcagctg
gtagagctttctagctggaaggagcgggtgagtcccggatgaagaaaggt
gtgtcacagcaggtgtgctgcagactaagagagtgactgaggaggtgaga
agctaagaggcgaaacagtctggcacctccttggcctgtatggtatttgg
ggatggagcaaaggcggcagaacagccagaagggagatagagtgcccaat
ctaaataagggcttttggtccctgaaacatctaaagtggttaaaggagcc
agtgcccagggtagtgctggtgttcaggctggggggcatctgagaagccc
gagttgacaaagaaaaaaaggagaagtcagctggaaagacgttttccacc
tgagtggcaaaagaagtgacattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45023074_45024224
seq2: B6Ng01-103C07.b_44_1189 (reverse)

seq1  ATTTGAGGCCAGTCTGGTCTACAGAGCAAGTTTCAGGACAGGACTGCACA  50
      |||||| |  |||||| |||||||||| ||||||| |||| |||||||||
seq2  ATTTGA-GTAAGTCTGTTCTACAGAGCCAGTTTCA-GACA-GACTGCACA  47

seq1  GAGAAACTCTGTCTCAAAAAAAAGCA-CACACAAGGGCTGGAGAGATGGC  99
      |||||||||||||||||||||||||| | ||||| ||||| |||||| ||
seq2  GAGAAACTCTGTCTCAAAAAAAAGCACCCCACAA-GGCTGAAGAGAT-GC  95

seq1  TCAGCGGTTCAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTTAATTC  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGCGGTTCAGAGCACTGACTGCTCTTCCAGAGGT-CTGAGTTTAATTC  144

seq1  CCAGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCT  194

seq1  TCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCATATACATAAAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACTCATATACATAAAATA  244

seq1  AATAGATAAATGGGGGGGGGAAAAAAAGCTCACACAAATGCTGATTCTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAAATGGGGGGGGGAAAAAAAGCTCACACAAATGCTGATTCTTC  294

seq1  AGAGTTTGCCAAGTGTTTTGCCTTCATATTTTAAGTACAAAATCATGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGCCAAGTGTTTTGCCTTCATATTTTAAGTACAAAATCATGTGT  344

seq1  GTCCTAACTCTTTGATATTCAATGATCCTTGTATTTCAGGGAATTTCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAACTCTTTGATATTCAATGATCCTTGTATTTCAGGGAATTTCTAA  394

seq1  AGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTCAGTTACAGTTGATGCTATTCCTGATCATCATCCAGGTGAA  444

seq1  GAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTAATTTCCTCAATTCTGGAAAAATTTTCAATCAGTATACCTT  494

seq1  AGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAGAGACTCTGGTTTTATTGGAGAAAGTGCTGTGGAAAAGCTTA  544

seq1  TTCTCAAGTAAGTAAATCATAAATGTTTGGATTTTTTTTCCCTGTATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTAAGTAAATCATAAATGTTTGGATTTTTTTTCCCTGTATAAA  594

seq1  AATTTGTTCTAAGGGCTGGAAAGATAGCTCAATGGTTAAGAGCACTTAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTCTAAGGGCTGGAAAGATAGCTCAATGGTTAAGAGCACTTAAC  644

seq1  TGCTCTTGCAGAGGACCCAGGTTCAATTCCCCACACCTGCATGGTAGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTGCAGAGGACCCAGGTTCAATTCCCCACACCTGCATGGTAGCTC  694

seq1  ACAACGCTACATAACTCCAGTTCCCAAGGATTGACATTGTTCTGACCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGCTACATAACTCCAGTTCCCAAGGATTGACATTGTTCTGACCCTG  744

seq1  CAGACACCAGACATGCATGCAGGTATACTAGTCAGGTGCCCTAGAGTGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCAGACATGCATGCAGGTATACTAGTCAGGTGCCCTAGAGTGGT  794

seq1  GTAGCCTGTGAGGCGTGACCCCTTTAGGAATCACCTAAGACCATTGGATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGTGAGGCGTGACCCCTTTAGGAATCACCTAAGACCATTGGATA  844

seq1  ACACAGGTAGTAAAACTAGAGTTATGAGTAGCTACAAGGGTGACTTTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTAGTAAAACTAGAGTTATGAGTAGCTACAAGGGTGACTTTATG  894

seq1  GTTGGGGTCACTATACCTTGGGGGACTGTATTAAAAGGTCACAGCACTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTCACTATACCTTGGGGGACTGTATTAAAAGGTCACAGCACTAG  944

seq1  GAAGGTTGAGAACCATTGGTCTAGAGGAACAGAACTTGTAACGTGAATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTGAGAACCATTGGTCTAGAGGAACAGAACTTGTAACGTGAATCT  994

seq1  GTAGGTATAGAAAGGGGATTTGGTAAAATGGTTTACAGGCTATGATCTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTATAGAAAGGGGATTTGGTAAAATGGTTTACAGGCTATGATCTGG  1044

seq1  CTACTCCAACAATGGCTGTCTACAAAAGGAAGGTTCAGAAGTCCAGTTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCAACAATGGCTGTCTACAAAAGGAAGGTTCAGAAGTCCAGTTAT  1094

seq1  TCAATCCAAGAGGTTGGATGTCTCAGCTGGTCTTCAGCATACTCTGGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAAGAGGTTGGATGTCTCAGCTGGTCTTCAGCATACTCTGGAAT  1144

seq1  TC  1151
      ||
seq2  TC  1146

seq1: chr19_44844071_44845010
seq2: B6Ng01-103C07.g_70_993

seq1  GAATTCTCTGGGTCTCATACTTACACAACAAACTCTTCACCCACCGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGTCTCATACTTACACAACAAACTCTTCACCCACCGAGGC  50

seq1  ATCTCTCCAGCCCCTCCCCTGACGTTGTAGGTTCTAGGCGTTGAACTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCCTCCCCTGACGTTGTAGGTTCTAGGCGTTGAACTCAG  100

seq1  GGTTTCAGGCTTGTGTGGCAAGAGTCTTTACCTGGTGGGATATCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGGCTTGTGTGGCAAGAGTCTTTACCTGGTGGGATATCTTTTTT  150

seq1  TTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  200

seq1  TGGCTGACCTGGAACTTACTCTGTAAACCAGGCTGGCCTCAAACTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGCTGACCTGGAACTTACTCTGTAAACCAGGCTGGCCTCAAACTCAAAA  250

seq1  ATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACC  300

seq1  ACTGCCCAGCCCTGGTGGGTTATCTTGCAGGACCCCAAAAGACAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAGCCCTGGTGGGTTATCTTGCAGGACCCCAAAAGACAAATTTT  350

seq1  TTACCAACTCCATGCTAACCAAGTAAAGTGCATTTTGGGTCTGATTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAACTCCATGCTAACCAAGTAAAGTGCATTTTGGGTCTGATTCTAT  400

seq1  GTTGGGCAGCAGTTGGCAGCCTCTGGTCTGTGTAACTCTACACACTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCAGCAGTTGGCAGCCTCTGGTCTGTGTAACTCTACACACTGATC  450

seq1  TCTGGTCTAGGAAAGAGCTATGACCTCAAAGTAAGTGTGAGAGAACCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTAGGAAAGAGCTATGACCTCAAAGTAAGTGTGAGAGAACCAGC  500

seq1  TTTCCCCCTACACCTTAATACAGAAGCTTCTGGGATGCCCATGGCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTACACCTTAATACAGAAGCTTCTGGGATGCCCATGGCAGCTG  550

seq1  GTAGAGCTTTCTAGCTGGAAGGAGCGGGTGAGTCCCGGATGAGGAAGGGT  600
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  GTAGAGCTTTCTAGCTGGAAGGAGCGGGTGAGTCCCGGATGAAGAAAGGT  600

seq1  GTGTCACAGCAGGTGTGCTGCAGACTAAGAGAGTGACTGAGGAGGTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAGCAGGTGTGCTGCAGACTAAGAGAGTGACTGAGGAGGTGAGA  650

seq1  AGCTAAGAGGCGAAGCAGTCTGGCAGCCTCCTTGGCCTGTATGGTATTTG  700
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  AGCTAAGAGGCGAAACAGTCTGGCA-CCTCCTTGGCCTGTATGGTATTTG  699

seq1  GGGATGGAGCAAAAGGCAGGCAAGAACAGCCAAGAAGGGAGATAGAGTGC  750
      |||||||||| |||||| ||| ||||||||| ||||||||||||||||||
seq2  GGGATGGAGC-AAAGGC-GGC-AGAACAGCC-AGAAGGGAGATAGAGTGC  745

seq1  CACAATCTAAATAAGGGCTTTTGGTCCCCTGAAACATCTTAGATGTGGTT  800
      | ||||||||||||||||||||||| |||||||||||||   | ||||||
seq2  C-CAATCTAAATAAGGGCTTTTGGT-CCCTGAAACATCT--AAAGTGGTT  791

seq1  AGAGGAAGCCAGTGCCCAGGGTAGTGCTGGTTGTTCAGGCTGGTGGCATT  850
      | ||| |||||||||||||||||||||||| |||||||||||| ||   |
seq2  AAAGG-AGCCAGTGCCCAGGGTAGTGCTGG-TGTTCAGGCTGGGGGGCAT  839

seq1  CTGAGAAGCCCAGAGTTGACAAAGGAGAAAAGGAGAAGTCAGCTGGAGAG  900
      ||||||||||| |||||||||||| | |||||||||||||||||||| ||
seq2  CTGAGAAGCCC-GAGTTGACAAAGAAAAAAAGGAGAAGTCAGCTGGAAAG  888

seq1  ACGTTTCCAACCTGAGGGTGGGGCAGAGGAAGTGACATTG  940
      |||||| | ||||||    | |||| | ||||||||||||
seq2  ACGTTTTCCACCTGA----GTGGCAAAAGAAGTGACATTG  924