BAC Information

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BAC

Clone NameB6Ng01-104L17
Chromosome19 (Build37)
Map Location 38,128,228 - 38,315,390
singlet/doubletdoublet
Overlap geneCep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik
Upstream geneCpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
Downstream geneLgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104L17.bB6Ng01-104L17.g
ACCDH912942DH912943
length9841,107
definitionDH912942|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L17, 5' end.DH912943|Mus musculus domesticus DNA, BAC clone: B6Ng01-104L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,314,681 - 38,315,390)(38,128,228 - 38,129,342)
sequence
gaattcccttataactaataactctctggcttccacttgtttgcaggcat
atgctaagcactacatagtatacaggcatcttatgtgaaggttatcgtaa
gtcaaccttgtgaatgaattaagtattgctttatgaatgaaaacaggctc
agagaaaacaggtaatttgcctaatagtccccacgtttttaacacttcag
ttgcaagaatttcccatatccatggaggatagatgccaagcccctggcaa
ctgactaaaagtgcatgtaacaacggaaccttatgtttgctgtggttttg
cctaatacatgcatgcatacatacacacacacacacacgcgcacacacac
acacacacacacacacacacacacacacacacacacatggtaaaagagaa
tttattaatcagccagctaaaagactgacaataaataataaaatagaacc
actataactacactgtggacgaagtgatttgtttagaagctggggatatc
ggcactagatgcatataaccttagggcatgatcactccgaattatggtta
aggggaaggtttttattgtagaaaggagggagagcacagccagaggcttc
tggaagagtccagagcagagaaagaaagtagggcactgaccatggctagc
agattggactgagaaatagagggagagagaaggaagagagagaaagggag
acagagaaagtgtggacaaaagacaaagctgaaatagcagggttatgagg
agagctgaggagctgagggagggaagcccatgagctggagaaggtgaggg
taaggggcagcaagagaaaagccaacgatgtgccagcatggatctgagga
tgtgtaacaagtaccagtgatattgcggataccagaggccagcatgtgct
gtggttatgctaataggcacacagatagctattttgtcccttctgccagt
ggcaagggaaacagttcctttgtagaggaaactg
gaattccagtatcttggattgccatcttcctgctttaaacaaataaaaca
aactgaaattccttacatggtttctcatccactagattcagtaacaaatg
gatttgttgtcttttacttaacagtgcctaactacatttgttaaactcta
gccctcgcagccacactaccagatggttatctgcatcctggtatagatca
ggaaactgaggctcaaggaagtgaaatgttctcaaggccacacatctatt
aagaggcattcaggattttaacccttgtactacatacattaccttcatag
gatgctttgctactgatttttttcgctgtaaacttctggtatgcctaggc
taagtctaagaacgacacgccataagcaattgtttgcttcaagttctcaa
gacgctaatcaagaccctgatgtgaccgataaagaccaataaagacacat
ctgcctgtagggcagcaatctggaatcgctgctggggctcacaatctcgg
ttttcaaactgggagtttatcagctccctacagcttcgttccccattgct
ccgcccctgagtttgacagggtaaatgagtggcccgcccggaagactagg
aggttgtgctctacctcacaaagagaaattggttcccaaagaacatagac
cagtcagtcccaggcgagggtcacagagcttgtcctatggataacagcag
ggtccgaacacacagagaaaagcaagcaggcccagattgaactggtccct
ccgactctgtccttggctccgcctccaccacgcccacactcccgcacacc
cacacccacacccacaccatcacacccgcctcatttcacaccacgtttcc
acagacaccctctatcttcacaaggtccttctctgacccggccggcacgg
attgtagctcccgtcaagctctatgtcttgctcgcccttaccttccccac
tctgccctacccgtctgcccggctagtttcgatccctcctctgattccag
agccgttcttcgccccgctgccgtcgggtttcagacttgccccgccctcc
ttctggtctagaattccgctttgcccgccctaggctctggacctccctct
cttcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38314681_38315390
seq2: B6Ng01-104L17.b_44_753 (reverse)

seq1  CTTTCTCTGTCTCCCTTTCTCTCTCTTCCTTCTCTCTCCCTCTATTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGTCTCCCTTTCTCTCTCTTCCTTCTCTCTCCCTCTATTTCTC  50

seq1  AGTCCAATCTGCTAGCCATGGTCAGTGCCCTACTTTCTTTCTCTGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATCTGCTAGCCATGGTCAGTGCCCTACTTTCTTTCTCTGCTCTG  100

seq1  GACTCTTCCAGAAGCCTCTGGCTGTGCTCTCCCTCCTTTCTACAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCCAGAAGCCTCTGGCTGTGCTCTCCCTCCTTTCTACAATAAAA  150

seq1  ACCTTCCCCTTAACCATAATTCGGAGTGATCATGCCCTAAGGTTATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCCTTAACCATAATTCGGAGTGATCATGCCCTAAGGTTATATGC  200

seq1  ATCTAGTGCCGATATCCCCAGCTTCTAAACAAATCACTTCGTCCACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGCCGATATCCCCAGCTTCTAAACAAATCACTTCGTCCACAGTG  250

seq1  TAGTTATAGTGGTTCTATTTTATTATTTATTGTCAGTCTTTTAGCTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAGTGGTTCTATTTTATTATTTATTGTCAGTCTTTTAGCTGGCT  300

seq1  GATTAATAAATTCTCTTTTACCATGTGTGTGTGTGTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATAAATTCTCTTTTACCATGTGTGTGTGTGTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTATGTATGCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTATGTATGCATGC  400

seq1  ATGTATTAGGCAAAACCACAGCAAACATAAGGTTCCGTTGTTACATGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAGGCAAAACCACAGCAAACATAAGGTTCCGTTGTTACATGCAC  450

seq1  TTTTAGTCAGTTGCCAGGGGCTTGGCATCTATCCTCCATGGATATGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCAGTTGCCAGGGGCTTGGCATCTATCCTCCATGGATATGGGAA  500

seq1  ATTCTTGCAACTGAAGTGTTAAAAACGTGGGGACTATTAGGCAAATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCAACTGAAGTGTTAAAAACGTGGGGACTATTAGGCAAATTACC  550

seq1  TGTTTTCTCTGAGCCTGTTTTCATTCATAAAGCAATACTTAATTCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTGAGCCTGTTTTCATTCATAAAGCAATACTTAATTCATTCA  600

seq1  CAAGGTTGACTTACGATAACCTTCACATAAGATGCCTGTATACTATGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGACTTACGATAACCTTCACATAAGATGCCTGTATACTATGTAG  650

seq1  TGCTTAGCATATGCCTGCAAACAAGTGGAAGCCAGAGAGTTATTAGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCATATGCCTGCAAACAAGTGGAAGCCAGAGAGTTATTAGTTAT  700

seq1  AAGGGAATTC  710
      ||||||||||
seq2  AAGGGAATTC  710

seq1: chr19_38128228_38129342
seq2: B6Ng01-104L17.g_69_1175

seq1  GAATTCCAGTATCTTGGATTGCCATCTTCCTGCTTTAAACAAATAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTATCTTGGATTGCCATCTTCCTGCTTTAAACAAATAAAACA  50

seq1  AACTGAAATTCCTTACATGGTTTCTCATCCACTAGATTCAGTAACAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAATTCCTTACATGGTTTCTCATCCACTAGATTCAGTAACAAATG  100

seq1  GATTTGTTGTCTTTTACTTAACAGTGCCTAACTACATTTGTTAAACTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTGTCTTTTACTTAACAGTGCCTAACTACATTTGTTAAACTCTA  150

seq1  GCCCTCGCAGCCACACTACCAGATGGTTATCTGCATCCTGGTATAGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGCAGCCACACTACCAGATGGTTATCTGCATCCTGGTATAGATCA  200

seq1  GGAAACTGAGGCTCAAGGAAGTGAAATGTTCTCAAGGCCACACATCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTGAGGCTCAAGGAAGTGAAATGTTCTCAAGGCCACACATCTATT  250

seq1  AAGAGGCATTCAGGATTTTAACCCTTGTACTACATACATTACCTTCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCATTCAGGATTTTAACCCTTGTACTACATACATTACCTTCATAG  300

seq1  GATGCTTTGCTACTGATTTTTTTCGCTGTAAACTTCTGGTATGCCTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTGCTACTGATTTTTTTCGCTGTAAACTTCTGGTATGCCTAGGC  350

seq1  TAAGTCTAAGAACGACACGCCATAAGCAATTGTTTGCTTCAAGTTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTAAGAACGACACGCCATAAGCAATTGTTTGCTTCAAGTTCTCAA  400

seq1  GACGCTAATCAAGACCCTGATGTGACCGATAAAGACCAATAAAGACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTAATCAAGACCCTGATGTGACCGATAAAGACCAATAAAGACACAT  450

seq1  CTGCCTGTAGGGCAGCAATCTGGAATCGCTGCTGGGGCTCACAATCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTAGGGCAGCAATCTGGAATCGCTGCTGGGGCTCACAATCTCGG  500

seq1  TTTTCAAACTGGGAGTTTATCAGCTCCCTACAGCTTCGTTCCCCATTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACTGGGAGTTTATCAGCTCCCTACAGCTTCGTTCCCCATTGCT  550

seq1  CCGCCCCTGAGTTTGACAGGGTAAATGAGTGGCCCGCCCGGAAGACTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCTGAGTTTGACAGGGTAAATGAGTGGCCCGCCCGGAAGACTAGG  600

seq1  AGGTTGTGCTCTACCTCACAAAGAGAAATTGGTTCCCAAAGAACATAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGCTCTACCTCACAAAGAGAAATTGGTTCCCAAAGAACATAGAC  650

seq1  CAGTCAGTCCCAGGCGAGGGTCACAGAGCTTGTCCTATGGATAACAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTCCCAGGCGAGGGTCACAGAGCTTGTCCTATGGATAACAGCAG  700

seq1  GGTCCGAACACACAGAGAAAAGCAAGCAGGCCCAGATTGAACTGGT-CCT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGTCCGAACACACAGAGAAAAGCAAGCAGGCCCAGATTGAACTGGTCCCT  750

seq1  CCGACTCTGTCCTTGGCTCCGCCTCCACCACGCCCACACTCCCGCACACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTCTGTCCTTGGCTCCGCCTCCACCACGCCCACACTCCCGCACACC  800

seq1  CACACCCACACCCACACCATCACACCCGCCTCATTTCACACCACGTTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCACACCCACACCATCACACCCGCCTCATTTCACACCACGTTTCC  850

seq1  ACAGACACCCTCTATCTTCACAAGGTCCTTCTCTGACCCGGCCGGCACGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACCCTCTATCTTCACAAGGTCCTTCTCTGACCCGGCCGGCACGG  900

seq1  ATTGTAGCTCCCGTCAGGCTCTATGTCTTGCTCGCCCTTACCTTCCCCAC  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTGTAGCTCCCGTCAAGCTCTATGTCTTGCTCGCCCTTACCTTCCCCAC  950

seq1  TCTGCCCCTACCCGTCTGCCCGGCTAGTTTCGATCCCCTCCCTCTGATTC  999
      |||| ||||||||||||||||||||||||||||||||   ||||||||||
seq2  TCTG-CCCTACCCGTCTGCCCGGCTAGTTTCGATCCC--TCCTCTGATTC  997

seq1  CAGAGCCGGTCTTCGCCCCGCCTGCCGTCGGGTTCCAGACCTTGCCCCGC  1049
      |||||||| ||||||||||| ||||||||||||| |||| ||||||||||
seq2  CAGAGCCGTTCTTCGCCCCG-CTGCCGTCGGGTTTCAGA-CTTGCCCCGC  1045

seq1  CCCTCCTCTGGCTCTAGACTCCGCCTTTGCCCCGCCCTCAGGCTCCTGGG  1099
      ||  | ||||| |||||| | |  ||||| |||||||| ||||||   ||
seq2  CCTCCTTCTGG-TCTAGAATTCCGCTTTG-CCCGCCCT-AGGCTC--TGG  1090

seq1  CCCTCCCTCTC-TCCTC  1115
       |||||||||| |||||
seq2  ACCTCCCTCTCTTCCTC  1107