BAC Information

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BAC

Clone NameB6Ng01-104N17
Chromosome19 (Build37)
Map Location 5,637,286 - 5,778,028
singlet/doubletdoublet
Overlap geneRela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1
Upstream geneGm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip
Downstream gene2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104N17.bB6Ng01-104N17.g
ACCDH913036DH913037
length1,045955
definitionDH913036|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N17, 5' end.DH913037|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,776,980 - 5,778,028)(5,637,286 - 5,638,245)
sequence
gaattcagccgtggctgcatctgggctctgtaacagtggagggaaagatg
tttcagatgttcgtctctaatagtgaaaggaagaaaacccagttcctttc
tattgtagactttgtggtgtggcagggtatgcgcatgtgtgtgcatgctt
gtggaggccagaggtcatctggggttcctcacccagcctggagggctgga
cctggattgccagtaaggcccagggggtccccgtgtcccatccccccctc
cccccatcctttccagagttggctttaactgtgagtccctaagccacatc
actacctccagttcaactctacacctttggacagggcagctcacactagg
tctacagtaactgttgcttgccttctttatggagttattacgtgttgaga
caaggtcccccaaagcacagtttaagtgacctcactatgtggctgaggat
agatgacctagacttccttttttttttttaaagatttatttatttattaa
tgtaagcacactgtagctgtcttcacacactccagaagagggcgtcagat
ctcatcacggacggttgtgagccaccatgtggttgctggggatttgaact
caggaccttcggaacagcagtcaggtgctcctaaccactgagccacctca
ccagcccccttttttaaatgttttattattattattatttatttattata
tgtaagtacactgtagctgtcctcagatacttccagaagagggagtcaga
tctcgttacagatggttgtgagccaccatgtggttgctgggatttgaact
ccagacctttggaagggcagtcgggtgctgggtgctcttacccactgagc
catctcaccagccccgacctagaactttcctaatccttgtctccacaccc
cagccccctacccaggcttatctctgtgcatagttttacagactgttctc
aggacttgtccattatgcatttgaaaggaattttccaatgtgattattgt
tgtttttttcttttctttaaaaattttgttttggttttgttgttt
gaattcagtcactggcctccgcgggagcagcaggcctgggcctctccctg
cgcagggcgaatggccgcagcctgccaccagccctggctcggctccagtc
ccggccagggtgacatcaccaaactcctgagatcagagcggggcggggaa
cgggacccgaaatcccctaaaaacagagtgagtaatcgcgggcccgccct
ccaggcggggccgggaacgggaccgggaccccgagcgagccgcgctgcgg
agcttgtagtcgggccggcctcgggacaaacagcctcggcgtcctcccgc
cgcgctgcggtgtccccgcccgcgcgcccgccgcacaccttccgcgccca
gcgtgagtcgcgcacctgctctcggccccccacgcgcggcggtggcggtg
gcggcggctcagcgcgcaggcgcggccggattccgggcagtgacgcgacg
acgggcgcgcgccgcgcatttccgcctctggcgaatggctttactttagc
gcgccgtgggctcagctgcgaccccggccccgcccccgggaccctgacca
tggacggtgaggctgccctctggctcgggggatggctgccctagagctcc
ggggcctgcggcggaatctcccccctccccgcgccgtcttccgccccttt
ctgcgccgcgggttgctgcgcagggagcggcaggccggatggtggcacgg
ggcggggcgggctgcgagggggtctgactcagttacccctctcagtggag
ggcgccttgactcagtgtccctcctgggtgggggtacgggtgaatcttga
ctccgtttcctccggctcccccacccccgtgtcgatgcgattagttctgg
cttcctttccgtgtaaggagaaagtatctgactcagtttcccagaagagg
agaggagggtaataccccttcctcagtgtcacttatgacgtaaacaggca
ctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5776980_5778028
seq2: B6Ng01-104N17.b_45_1089 (reverse)

seq1  AAACAA-AAAACAAAAACAAAAATTTTTTAAAAAGAAAAAGAAAAAAACA  49
      |||||| ||||| |||||||||  ||||||||    ||||||||||||||
seq2  AAACAACAAAACCAAAACAAAA--TTTTTAAA---GAAAAGAAAAAAACA  45

seq1  AACAAAATAATCAACATTGGAAAATATCCTTTTCAAATGCATATGGGAC-  98
         | ||||||| |||||||||||| ||| |||||||||||||  |||| 
seq2  ---ACAATAATC-ACATTGGAAAAT-TCC-TTTCAAATGCATAATGGACA  89

seq1  AGTCCTGAGAACAGTCTGT-AAACTATGCACAGAGATAAGCCTGGGTAGG  147
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTCCTGAGAACAGTCTGTAAAACTATGCACAGAGATAAGCCTGGGTAGG  139

seq1  GGGCT-GGGTGTGGAGACAAGGATTAGGAA--GTCTAGGTCGGGGCTGGT  194
      ||||| ||||||||||||||||||||||||   |||||||||||||||||
seq2  GGGCTGGGGTGTGGAGACAAGGATTAGGAAAGTTCTAGGTCGGGGCTGGT  189

seq1  GAGATGGCTCAGTGGGTAAGAGCACCCAGCACCCGACTGCCCTTCCAAAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTGGGTAAGAGCACCCAGCACCCGACTGCCCTTCCAAAG  239

seq1  GTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTA  289

seq1  ACGAGATCTGACTCCCTCTTCTGG-AGTATCTGAGGACAGCTACAGTGTA  343
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACGAGATCTGACTCCCTCTTCTGGAAGTATCTGAGGACAGCTACAGTGTA  339

seq1  CTTACATATAATAAATAAATAATAATAATAATAAAACATTTAAAAAAGGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATATAATAAATAAATAATAATAATAATAAAACATTTAAAAAAGGG  389

seq1  GGCTGGTGAGGTGGCTCAGTGGTTAGGAGCACCTGACTGCTGTTCCGAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGAGGTGGCTCAGTGGTTAGGAGCACCTGACTGCTGTTCCGAAG  439

seq1  GTCCTGAGTTCAAATCCCCAGCAACCACATGGTGGCTCACAACCGTCCGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTTCAAATCCCCAGCAACCACATGGTGGCTCACAACCGTCCGT  489

seq1  GATGAGATCTGACGCCCTCTTCTGGAGTGTGTGAAGACAGCTACAGTGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATCTGACGCCCTCTTCTGGAGTGTGTGAAGACAGCTACAGTGTG  539

seq1  CTTACATTAATAAATAAATAAATCTTTAAAAAAAAAAAAGGAAGTCTAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTAATAAATAAATAAATCTTTAAAAAAAAAAAAGGAAGTCTAGG  589

seq1  TCATCTATCCTCAGCCACATAGTGAGGTCACTTAAACTGTGCTTTGGGGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATCCTCAGCCACATAGTGAGGTCACTTAAACTGTGCTTTGGGGG  639

seq1  ACCTTGTCTCAACACGTAATAACTCCATAAAGAAGGCAAGCAACAGTTAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCTCAACACGTAATAACTCCATAAAGAAGGCAAGCAACAGTTAC  689

seq1  TGTAGACCTAGTGTGAGCTGCCCTGTCCAAAGGTGTAGAGTTGAACTGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCTAGTGTGAGCTGCCCTGTCCAAAGGTGTAGAGTTGAACTGGA  739

seq1  GGTAGTGATGTGGCTTAGGGACTCACAGTTAAAGCCAACTCTGGAAAGGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGATGTGGCTTAGGGACTCACAGTTAAAGCCAACTCTGGAAAGGA  789

seq1  TGGGGGGAGGGGGGGATGGGACACGGGGACCCCCTGGGCCTTACTGGCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAGGGGGGGATGGGACACGGGGACCCCCTGGGCCTTACTGGCAA  839

seq1  TCCAGGTCCAGCCCTCCAGGCTGGGTGAGGAACCCCAGATGACCTCTGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCCAGCCCTCCAGGCTGGGTGAGGAACCCCAGATGACCTCTGGC  889

seq1  CTCCACAAGCATGCACACACATGCGCATACCCTGCCACACCACAAAGTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAAGCATGCACACACATGCGCATACCCTGCCACACCACAAAGTCT  939

seq1  ACAATAGAAAGGAACTGGGTTTTCTTCCTTTCACTATTAGAGACGAACAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGAAAGGAACTGGGTTTTCTTCCTTTCACTATTAGAGACGAACAT  989

seq1  CTGAAACATCTTTCCCTCCACTGTTACAGAGCCCAGATGCAGCCACGGCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACATCTTTCCCTCCACTGTTACAGAGCCCAGATGCAGCCACGGCT  1039

seq1  GAATTC  1049
      ||||||
seq2  GAATTC  1045

seq1: chr19_5637286_5638245
seq2: B6Ng01-104N17.g_69_1023

seq1  GAATTCAGTCACTGGCCTCCGCGGGAGCAGCAGGCCTGGGCCTCTCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCACTGGCCTCCGCGGGAGCAGCAGGCCTGGGCCTCTCCCTG  50

seq1  CGCAGGGCGAATGGCCGCAGCCTGCCACCAGCCCTGGCTCGGCTCCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGCGAATGGCCGCAGCCTGCCACCAGCCCTGGCTCGGCTCCAGTC  100

seq1  CCGGCCAGGGTGACATCACCAAACTCCTGAGATCAGAGCGGGGCGGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCAGGGTGACATCACCAAACTCCTGAGATCAGAGCGGGGCGGGGAA  150

seq1  CGGGACCCGAAATCCCCTAAAAACAGAGTGAGTAATCGCGGGCCCGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACCCGAAATCCCCTAAAAACAGAGTGAGTAATCGCGGGCCCGCCCT  200

seq1  CCAGGCGGGGCCGGGAACGGGACCGGGACCCCGAGCGAGCCGCGCTGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGGGGCCGGGAACGGGACCGGGACCCCGAGCGAGCCGCGCTGCGG  250

seq1  AGCTTGTAGTCGGGCCGGCCTCGGGACAAACAGCCTCGGCGTCCTCCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTAGTCGGGCCGGCCTCGGGACAAACAGCCTCGGCGTCCTCCCGC  300

seq1  CGCGCTGCGGTGTCCCCGCCCGCGCGCCCGCCGCACACCTTCCGCGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCTGCGGTGTCCCCGCCCGCGCGCCCGCCGCACACCTTCCGCGCCCA  350

seq1  GCGTGAGTCGCGCACCTGCTCTCGGCCCCCCACGCGCGGCGGTGGCGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAGTCGCGCACCTGCTCTCGGCCCCCCACGCGCGGCGGTGGCGGTG  400

seq1  GCGGCGGCTCAGCGCGCAGGCGCGGCCGGATTCCGGGCAGTGACGCGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGGCTCAGCGCGCAGGCGCGGCCGGATTCCGGGCAGTGACGCGACG  450

seq1  ACGGGCGCGCGCCGCGCATTTCCGCCTCTGGCGAATGGCTTTACTTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCGCGCGCCGCGCATTTCCGCCTCTGGCGAATGGCTTTACTTTAGC  500

seq1  GCGCCGTGGGCTCAGCTGCGACCCCGGCCCCGCCCCCGGGACCCTGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGTGGGCTCAGCTGCGACCCCGGCCCCGCCCCCGGGACCCTGACCA  550

seq1  TGGACGGTGAGGCTGCCCTCTGGCTCGGGGGATGGCTGCCCTAGAGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGGTGAGGCTGCCCTCTGGCTCGGGGGATGGCTGCCCTAGAGCTCC  600

seq1  GGGGCCTGCGGCGGAATCTCCCCCCTCCCCGCGCCGTCTTCCGCCCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGCGGCGGAATCTCCCCCCTCCCCGCGCCGTCTTCCGCCCCTTT  650

seq1  CTGCGCCGCGGGTTGCTGCGCAGGGAGCGGCAGGCCGGATGGTGGCACGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCCGCGGGTTGCTGCGCAGGGAGCGGCAGGCCGGATGGTGGCACGG  700

seq1  GGCGGGGCGGGCTGCGAGGGGGTCTGACTCAGTTACCCCTCTCAGTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGCGGGCTGCGAGGGGGTCTGACTCAGTTACCCCTCTCAGTGGAG  750

seq1  GGCGCCTTGACTCAGTGTCCCTCCTGGGTGGGGGTACGGGTGAATCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCTTGACTCAGTGTCCCTCCTGGGTGGGGGTACGGGTGAATCTTGA  800

seq1  CTCCGTTTCCTCCGGCTCCCCCCACCCCCGTGTCGATGCGATTAGTTCTG  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCCGTTTCCTCCGGCT-CCCCCACCCCCGTGTCGATGCGATTAGTTCTG  849

seq1  GCTTCCTTTCCGTGTAAGGAAGAAAGTATCTGACTCAGTTTCCCCAGAAG  900
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GCTTCCTTTCCGTGTAAGG-AGAAAGTATCTGACTCAGTTT-CCCAGAAG  897

seq1  AGGAGAGGAGGGTATTACCCCCTCCTCAGTGTCACTTATGAACGTAAAAC  950
      |||||||||||||| |||||| |||||||||||||||||| |||| ||||
seq2  AGGAGAGGAGGGTAATACCCCTTCCTCAGTGTCACTTATG-ACGT-AAAC  945

seq1  AGGCACTGAC  960
      ||||||||||
seq2  AGGCACTGAC  955