BAC Information

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BAC

Clone NameB6Ng01-105H05
Chromosome19 (Build37)
Map Location 26,966,842 - 27,042,521
singlet/doubletdoublet
Overlap genenone
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneLOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105H05.bB6Ng01-105H05.g
ACCDH913470DH913471
length1,229949
definitionDH913470|Mus musculus domesticus DNA, BAC clone: B6Ng01-105H05, 5' end.DH913471|Mus musculus domesticus DNA, BAC clone: B6Ng01-105H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,041,279 - 27,042,521)(26,966,842 - 26,967,786)
sequence
gaattctacaaagtactgtgcagtgaaaacctcaaaatttaagtaaatat
atatgctgaggacagagaccattgtttcacattataggacctcaagaaaa
gtgttaaatgacaccacctaacaaaattcaaaatttaaaacaaaaataaa
aatttaaagttatttttaaaaaagaaattacagtttaatattgttaatat
tgttaataaggtctatcatgagatgcaatgcttcagttatcaccccaaaa
ctggtggtattcttaatgagaacccctaaatcttaaacaaaatcagaaat
aaaatttgataatgtactaattatcatagccctgatgaccgagagaatca
acccacacataatccaggaaaactaacttttagcattccacaatcaaaaa
tagaactcagagaatgggggaataaagcaatgacattagctgtcatacac
atgttcatatatgacatcacataagagatgatcacaagacaaaagcagac
aacacaggcattcataggagaatgtagagccatagggctttttaacttat
tattaatgcaatactcaaagagaactaaaaaatactttcaaaaaatatgg
aggcacacactatggcaaaggggtagaattcccataatttaatttaagtg
taatcctgattttaaaaaatacctactttgggctggaaagatggctcagt
gggtaaatgcactgactgctcttccagaggtactgtgttcaattcccagc
aaccacacggtggctcacaaccatctgtaatggggatctgatgccctctt
ctggtgtgtctgaagactgtaacagtgtacatgaaataaataaataaatc
ttaaaaaaaaactgctttataaaagatagacaatgccaccctaaagttcc
catgggaaataaatcagatagtcagaaaatacctgaaaagaacaatggtg
gtccagaaaatgatatattaggattatgatattaaaacaaattttgaaac
ttcctctatgaaagcagtatgttaagaaattatgagcagacttatgaaat
taagtagaaagtcctaaaatacatcttgaagaataaagagattctgaagt
cagtaatgaaaaggagtattccagtcaaggtaatgatcagtattacgtac
ttggaactgaaacttacctacacacatagatgcatggacgtgatgcctat
gtagacgtttctaagtgtatgattattta
gaattcacagaggtctgactgccaccgcctcctgactactagggttaaag
ttatgtgccaccatgccctgcttgggagacatttgtcactcaactgcctt
ccagcctcttgaccttacatttgagttcttgaattgaatctttgtgtcca
gcaatgtgtggtaagtgctctgtggtacacagtgcagcagaccctctgct
cttgagacacccatgcagtcagtcacatgtgtgtgcacatatagcacagc
agaagaggagggagggggcttcccgaggaggtatcactttctcatggtga
caggtggcaagctgtggctaactttttttttttttttttttttttaactt
cccttcctctgttctcactctctggaaggaggagcaaaattgagacggat
ggccctaggtggagaacatgaaggattccaggaaattgaatagtgacagc
cacagtggcttgactgactaaagcagtcagactttgaaactggtgctgca
atttccaaccaggcagtggtggactccgccacatcatcccgtggcttctc
ctgccttctccatgtctctcgctcagcatagtcctcaacttccagccctt
tcggctaagtgctaaactccatgctgtgcccaatttggcttcagccactt
actgagtcatgcaaaggcctctgcaaaacctgtactgactcggattttcc
tggcaagcagagatgggaagggaaaggaagtctccccaatgtgaacaccc
agtaggtggcacagtttcctgcaaacttaggtttgttggcattcagagcc
tgggcttgtcctgttggagtttgcagaatgtagagggttgttgacagagg
aagtgacagatgccagaatacccaggagggcacatctgggactttctcta
atgcttacttggatgataagcttcctttgttagagtttctataggtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27041279_27042521
seq2: B6Ng01-105H05.b_43_1271 (reverse)

seq1  TAAATAATTAT-CATTTAGAAACAGTCCTACCATTAGCATCA-GCTCATG  48
      |||||||| || || |||||||| || ||| |||  |||||| |  ||||
seq2  TAAATAATCATACACTTAGAAAC-GT-CTA-CATAGGCATCACGTCCATG  47

seq1  CATCTATGTGTGTAGATGAGTTTTCAGTTTCCCCAGTACTGTATACTGAA  98
      ||||||||||||||| | || ||||||||  || |||||   |||||| |
seq2  CATCTATGTGTGTAGGTAAG-TTTCAGTT--CCAAGTACGTAATACTG-A  93

seq1  TCATTTTACCCCTGACTGGGATACCTTCCTTATCATATACTGACTTCAG-  147
      |||||    || ||||||| ||||  ||||| |||| |||||||||||| 
seq2  TCATT---ACCTTGACTGGAATAC--TCCTTTTCAT-TACTGACTTCAGA  137

seq1  ATCTCTGTATTTCTTC-AGATGTATTTTAGGAACTTTCTACTTAATTTCA  196
      |||||| || |||||| |||||||||||||| ||||||||||||||||||
seq2  ATCTCTTTA-TTCTTCAAGATGTATTTTAGG-ACTTTCTACTTAATTTCA  185

seq1  TAAGTCTGCTCATATATTCTTAACATACTGCTTTCATAGAGGAAGTTTCA  246
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGCTCATAATTTCTTAACATACTGCTTTCATAGAGGAAGTTTCA  235

seq1  AAATTTGTTTTAAATATCATAATTCCTAATATATCATTTTCTTGGCCACC  296
      ||||||||||| |||||||||| ||||||||||||||||||| | |||||
seq2  AAATTTGTTTT-AATATCATAA-TCCTAATATATCATTTTCTGGACCACC  283

seq1  ATTGTTCTTTTTCAGGTATTTTCTGACTATCTGATTTATTTCCCATGGGA  346
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTC-TTTTCAGGTATTTTCTGACTATCTGATTTATTTCCCATGGGA  332

seq1  ACTTTAGGGTGGCATTGTCTATCTTTTATAAAGCAGTTTTTTTTTAAGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGGTGGCATTGTCTATCTTTTATAAAGCAGTTTTTTTTTAAGAT  382

seq1  TTATTTATTTATTTCATGTACACTGTTACAGTCTTCAGACACACCAGAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTCATGTACACTGTTACAGTCTTCAGACACACCAGAAG  432

seq1  AGGGCATCAGATCCCCATTACAGATGGTTGTGAGCCACCGTGTGGTTGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCAGATCCCCATTACAGATGGTTGTGAGCCACCGTGTGGTTGCT  482

seq1  GGGAATTGAACACAGTACCTCTGGAAGAGCAGTCAGTGCATTTACCCACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGAACACAGTACCTCTGGAAGAGCAGTCAGTGCATTTACCCACT  532

seq1  GAGCCATCTTTCCAGCCCAAAGTAGGTATTTTTTAAAATCAGGATTACAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTTTCCAGCCCAAAGTAGGTATTTTTTAAAATCAGGATTACAC  582

seq1  TTAAATTAAATTATGGGAATTCTACCCCTTTGCCATAGTGTGTGCCTCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAATTATGGGAATTCTACCCCTTTGCCATAGTGTGTGCCTCCA  632

seq1  TATTTTTTGAAAGTATTTTTTAGTTCTCTTTGAGTATTGCATTAATAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGAAAGTATTTTTTAGTTCTCTTTGAGTATTGCATTAATAATA  682

seq1  AGTTAAAAAGCCCTATGGCTCTACATTCTCCTATGAATGCCTGTGTTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAGCCCTATGGCTCTACATTCTCCTATGAATGCCTGTGTTGTC  732

seq1  TGCTTTTGTCTTGTGATCATCTCTTATGTGATGTCATATATGAACATGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGTCTTGTGATCATCTCTTATGTGATGTCATATATGAACATGTG  782

seq1  TATGACAGCTAATGTCATTGCTTTATTCCCCCATTCTCTGAGTTCTATTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGCTAATGTCATTGCTTTATTCCCCCATTCTCTGAGTTCTATTT  832

seq1  TTGATTGTGGAATGCTAAAAGTTAGTTTTCCTGGATTATGTGTGGGTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTGGAATGCTAAAAGTTAGTTTTCCTGGATTATGTGTGGGTTGA  882

seq1  TTCTCTCGGTCATCAGGGCTATGATAATTAGTACATTATCAAATTTTATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCGGTCATCAGGGCTATGATAATTAGTACATTATCAAATTTTATT  932

seq1  TCTGATTTTGTTTAAGATTTAGGGGTTCTCATTAAGAATACCACCAGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTTTGTTTAAGATTTAGGGGTTCTCATTAAGAATACCACCAGTTT  982

seq1  TGGGGTGATAACTGAAGCATTGCATCTCATGATAGACCTTATTAACAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGATAACTGAAGCATTGCATCTCATGATAGACCTTATTAACAATA  1032

seq1  TTAACAATATTAAACTGTAATTTCTTTTTTAAAAATAACTTTAAATTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATATTAAACTGTAATTTCTTTTTTAAAAATAACTTTAAATTTTT  1082

seq1  ATTTTTGTTTTAAATTTTGAATTTTGTTAGGTGGTGTCATTTAACACTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTTAAATTTTGAATTTTGTTAGGTGGTGTCATTTAACACTTT  1132

seq1  TCTTGAGGTCCTATAATGTGAAACAATGGTCTCTGTCCTCAGCATATATA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGTCCTATAATGTGAAACAATGGTCTCTGTCCTCAGCATATATA  1182

seq1  TTTACTTAAATTTTGTGGTTTTCACTGCACAGTACTTTGTAGAATTC  1243
      ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTACTTAAATTTTGAGGTTTTCACTGCACAGTACTTTGTAGAATTC  1229

seq1: chr19_26966842_26967786
seq2: B6Ng01-105H05.g_69_1016

seq1  GAATTCACAGAGGTCTGACTGCCACCGCCTCCTGACTACTAGGGTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGGTCTGACTGCCACCGCCTCCTGACTACTAGGGTTAAAG  50

seq1  TTATGTGCCACCATGCCCTGCTTGGGAGACATTTGTCACTCAACTGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCCACCATGCCCTGCTTGGGAGACATTTGTCACTCAACTGCCTT  100

seq1  CCAGCCTCTTGACCTTACATTTGAGTTCTTGAATTGAATCTTTGTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTTGACCTTACATTTGAGTTCTTGAATTGAATCTTTGTGTCCA  150

seq1  GCAATGTGTGGTAAGTGCTCTGTGGTACACAGTGCAGCAGACCCTCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGTGGTAAGTGCTCTGTGGTACACAGTGCAGCAGACCCTCTGCT  200

seq1  CTTGAGACACCCATGCAGTCAGTCACATGTGTGTGCACATATAGCACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACACCCATGCAGTCAGTCACATGTGTGTGCACATATAGCACAGC  250

seq1  AGAAGAGGAGGGAGGGGGCTTCCCGAGGAGGTATCACTTTCTCATGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGAGGGAGGGGGCTTCCCGAGGAGGTATCACTTTCTCATGGTGA  300

seq1  CAGGTGGCAAGCTGTGGCTAACTTTTTTTTTTTTTTTTTTTTTTTAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCAAGCTGTGGCTAACTTTTTTTTTTTTTTTTTTTTTTTAACTT  350

seq1  CCCTTCCTCTGTTCTCACTCTCTGGAAGGAGGAGCAGAATTGAGACGGAT  400
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCTTCCTCTGTTCTCACTCTCTGGAAGGAGGAGCAAAATTGAGACGGAT  400

seq1  GGCCCTAGGTGGAGAACATGAAGGATTCCAGGAAATTGAATAGTGACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTAGGTGGAGAACATGAAGGATTCCAGGAAATTGAATAGTGACAGC  450

seq1  CACAGTGGCTTGACTGACTAAAGCAGTCAGACTTTGAAACTGGTGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGCTTGACTGACTAAAGCAGTCAGACTTTGAAACTGGTGCTGCA  500

seq1  ATTTCCAACCAGGCAGTGGTGGACTCCGCCACATCATCCCGTGGCTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAACCAGGCAGTGGTGGACTCCGCCACATCATCCCGTGGCTTCTC  550

seq1  CTGCCTTCTCCATGTCTCTCGCTCAGCATAGTCCTCAACTTCCAGCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCTCCATGTCTCTCGCTCAGCATAGTCCTCAACTTCCAGCCCTT  600

seq1  TCGGCTAAGTGCTAAACTCCATGCTGTGCCCAATTTGGCTTCAGCCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTAAGTGCTAAACTCCATGCTGTGCCCAATTTGGCTTCAGCCACTT  650

seq1  ACTGAGTCATGCAAAGGCCTCTGCAAAACCTGTACTGACTCGGATTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTCATGCAAAGGCCTCTGCAAAACCTGTACTGACTCGGATTTTCC  700

seq1  TGGCAAGCAGAGATGGGAAGGGAAAGGAAGTC-CCCCAATGTGAACACCC  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCAAGCAGAGATGGGAAGGGAAAGGAAGTCTCCCCAATGTGAACACCC  750

seq1  AGTAGGTGGCACAGTTTCCTGCAAACTTAGGTTTGTTGGCATTCAGAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGGCACAGTTTCCTGCAAACTTAGGTTTGTTGGCATTCAGAGCC  800

seq1  TGGGC-TGTCCTGTTGGAGTTTTGCAGAATGTAGAGGGTTG-TGACAGAG  847
      ||||| ||||||||||||| ||||||||||||||||||||| ||||||||
seq2  TGGGCTTGTCCTGTTGGAG-TTTGCAGAATGTAGAGGGTTGTTGACAGAG  849

seq1  GAAGTGACAGATGCCAGAATACCCA-GAGGGCACATCTGGGACTTTCCTC  896
      ||||||||||||||||||||||||| |||||||||||||||||||||   
seq2  GAAGTGACAGATGCCAGAATACCCAGGAGGGCACATCTGGGACTTTCTCT  899

seq1  AATGCTTACTTGGATGATAAGCTTCCTTTGTTAGAGTTTCTATAGGTCT  945
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTACTTGGATGATAAGCTTCCTTTGTTAGAGTTTCTATAGGTCT  948