BAC Information

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BAC

Clone NameB6Ng01-109H17
Chromosome19 (Build37)
Map Location 60,439,378 - 60,569,578
singlet/doubletdoublet
Overlap genePrlhr
Upstream geneEmx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
Downstream gene2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109H17.bB6Ng01-109H17.g
ACCDH916378DH916379
length1,0851,127
definitionDH916378|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H17, 5' end.DH916379|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,439,378 - 60,440,464)(60,568,442 - 60,569,578)
sequence
gaattctcacagttgcttctctcaggactcctggcaggaccgagtttaca
tctattttcctcatggcctcagaggacagctacttctcagtttgatgcta
tggcctagtctggtgcctggcaataggcgttatcaagagtattccacact
ctgaccatggtgactaagcaccagtgatacacgtggcagagtaatgccac
tggctgctatggcagaccagctctctctgtgggttttcatgagtaggtgt
cttctatgtactgtctgcgttggatgatcctacagatagctctcctccag
tttcacaggaatccaggcttctaagtgaggaccatccatgattgctgaag
gggaaaagaggagagggatctatactgtttaagagatatggagcgtcctg
caggactgtcaatgtctgtaagtttctaccttaatgaaatgggtttgtta
ctgcctgtcattaaaaaatgtaggtgagagttaatgtttggtactgggta
ctaaaagcaattttcattgaccagtagtattggtacaacttgaaactttg
ccctgaggtctcaccccatgactgcagaatcagaagctatagttattcag
taagcagcctgcatgcatgtgctgaatcactgccacaaagcacccagccc
atagtagatgctcaatgaaaaattaatcgccattatgatttaaactgcag
ctgcctccccgggccagaactgagccaattagccactcaacagccacatc
aggggagattatcagatctgaaagctggcttctcgtctcttggaacagtg
acacttcctactgatgtcctttcatgaaaagggtggagagggggctgtta
tgttaactgacaaatcaaagcaagtcagataaagactgcaatcattttta
tccccattatcctgaggaattcagcccatatggcactctgccctcatcat
tacactctgatcacagaccctgccgtacctgggatcaacccagacatgaa
aggtagggaacagactcagatttctagacagctgtcacagaaaatttcca
ttcttaggggcctgggggtttgggggaggaattgg
gaattcagatcagagttaagcagtaagagttacagcatctatttcctgtg
gtaagttctagcagacacatatagtcttggagccagaagtcttggtccct
cttcctgctctacctaatagtggtgtggacctacgagttctaattactgc
ctgcaacttctgctttcttctctcaatggcccagctctgtagatgtcgta
aggtagcttagagattattcattctttgtaaccacatggctctctgaaac
gttcattttggcatacatagctagagtgattctgttgtctgtaatcgaaa
tttgataaatagagtatgtaaaaccaatggagtgtttaacacccagtata
tcccctcccctgtttccctctgagaacacattttggcagcaaggccttaa
aattattcatcaaatcatctaaaagtatatacctaacatccaaggttcta
cccttatgctgaatgtgtgtagctgtaaaatgagatggtccatagcttgg
gaacactgctcttcccatcttctgacttgaaaactacaggggtgcatcga
tggttaatcttgattgtcagctttataggatttagaatcaccatggaaac
acacccgtgagtgtatctaggagggtgttacttgaagaaggaaaacccat
cttgaaagtgcgccacatcatcccatggggctgggtcccagactgaagaa
aaagaaaaaaatcccatctgagtaccagcatttattttgtctctctctgc
tttctggctgtgggtatctttctccatgacgtttctgctacgatgtattg
catccatttaagcctcaatagactttcaagttgcttcttgacagaggtgc
ctttgacctttcggcctagtctgtaaatttgatcatcagagtgggtctga
tatactgatcatttgattctacagctcagatcctcgggaccccatctatc
tctgtgtagggattatgatggacagatggaggaagagtgtgtacaagaag
tcaccgtgtttttgaggttacagaaggttacattagccacttgctcatac
agtgggattcattcagggacagcatgcaaggttcggaatctggttaactg
cagttcatttgggcagctccacggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_60439378_60440464
seq2: B6Ng01-109H17.b_46_1130

seq1  GAATTCTCACAGTTGCTTCTCTCAGGACTCCTGGCAGGACCGAGTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAGTTGCTTCTCTCAGGACTCCTGGCAGGACCGAGTTTACA  50

seq1  TCTATTTTCCTCATGGCCTCAGAGGACAGCTACTTCTCAGTTTGATGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCCTCATGGCCTCAGAGGACAGCTACTTCTCAGTTTGATGCTA  100

seq1  TGGCCTAGTCTGGTGCCTGGCAATAGGCGTTATCAAGAGTATTCCACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGTCTGGTGCCTGGCAATAGGCGTTATCAAGAGTATTCCACACT  150

seq1  CTGACCATGGTGACTAAGCACCAGTGATACACGTGGCAGAGTAATGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGGTGACTAAGCACCAGTGATACACGTGGCAGAGTAATGCCAC  200

seq1  TGGCTGCTATGGCAGACCAGCTCTCTCTGTGGGTTTTCATGAGTAGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTATGGCAGACCAGCTCTCTCTGTGGGTTTTCATGAGTAGGTGT  250

seq1  CTTCTATGTACTGTCTGCGTTGGATGATCCTACAGATAGCTCTCCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGTACTGTCTGCGTTGGATGATCCTACAGATAGCTCTCCTCCAG  300

seq1  TTTCACAGGAATCCAGGCTTCTAAGTGAGGACCATCCATGATTGCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGGAATCCAGGCTTCTAAGTGAGGACCATCCATGATTGCTGAAG  350

seq1  GGGAAAAGAGGAGAGGGATCTATACTGTTTAAGAGATATGGAGCGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAGAGGAGAGGGATCTATACTGTTTAAGAGATATGGAGCGTCCTG  400

seq1  CAGGACTGTCAATGTCTGTAAGTTTCTACCTTAATGAAATGGGTTTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGTCAATGTCTGTAAGTTTCTACCTTAATGAAATGGGTTTGTTA  450

seq1  CTGCCTGTCATTAAAAAATGTAGGTGAGAGTTAATGTTTGGTACTGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTCATTAAAAAATGTAGGTGAGAGTTAATGTTTGGTACTGGGTA  500

seq1  CTAAAAGCAATTTTCATTGACCAGTAGTATTGGTACAACTTGAAACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCAATTTTCATTGACCAGTAGTATTGGTACAACTTGAAACTTTG  550

seq1  CCCTGAGGTCTCACCCCATGACTGCAGAATCAGAAGCTATAGTTATTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGTCTCACCCCATGACTGCAGAATCAGAAGCTATAGTTATTCAG  600

seq1  TAAGCAGCCTGCATGCATGTGCTGAATCACTGCCACAAAGCACCCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCCTGCATGCATGTGCTGAATCACTGCCACAAAGCACCCAGCCC  650

seq1  ATAGTAGATGCTCAATGAAAAATTAATCGCCATTATGATTTAAACTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGATGCTCAATGAAAAATTAATCGCCATTATGATTTAAACTGCAG  700

seq1  CTGCCTCCCCGGGCCAGAACTGAGCCAATTAGCCACTCAACAGCCACATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCCGGGCCAGAACTGAGCCAATTAGCCACTCAACAGCCACATC  750

seq1  AGGGGAGATTATCAGATCTGAAAGCTGGCTTCTCGTCTCTTGGAACAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGATTATCAGATCTGAAAGCTGGCTTCTCGTCTCTTGGAACAGTG  800

seq1  ACACTTCCTACTGATGTCCTTTCATG-AAAGGGTGGAGAGGGGGCTGTTA  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACTTCCTACTGATGTCCTTTCATGAAAAGGGTGGAGAGGGGGCTGTTA  850

seq1  TGTTAACTGACAAATCAAAGCAAGTCAGGATAAAGACTGCAATCA-TTTT  898
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TGTTAACTGACAAATCAAAGCAAGTCA-GATAAAGACTGCAATCATTTTT  899

seq1  ATCCCCATTATCCTGAGGAATTCAGCCCATATGGCACTCTGCCCTCATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATTATCCTGAGGAATTCAGCCCATATGGCACTCTGCCCTCATCA  949

seq1  TTACACTCTGATCACAGACCCTGCCGGTTACCTGGGATCAACCCAGAACA  998
      ||||||||||||||||||||||||||  |||||||||||||||||| |||
seq2  TTACACTCTGATCACAGACCCTGCCG--TACCTGGGATCAACCCAG-ACA  996

seq1  TGAAAGGTAGGGAACAGACCCAGATTTCTAGACAGCCTGTCACAGAAAAT  1048
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TGAAAGGTAGGGAACAGACTCAGATTTCTAGACAG-CTGTCACAGAAAAT  1045

seq1  TCCCATTCTTAGGGGCCTGGGGG-TTGGGGGAGGATTTGG  1087
      | ||||||||||||||||||||| ||||||||||| ||||
seq2  TTCCATTCTTAGGGGCCTGGGGGTTTGGGGGAGGAATTGG  1085

seq1: chr19_60568442_60569578
seq2: B6Ng01-109H17.g_66_1192 (reverse)

seq1  TTTCCGCTGAGCTGCCCAAATGAACTGACAGTTTAACAGATTTCAGAACC  50
      ||||||  ||||||||||||||||||| ||||| | |||| ||| |||||
seq2  TTTCCGTGGAGCTGCCCAAATGAACTG-CAGTTAACCAGA-TTCCGAACC  48

seq1  -TGCATGGCTGCTCCTGGATGTATCACACTG-ATGAGGCAGGTGCTAATG  98
       ||||| ||||  |||| ||| ||| ||||| |||||  ||  |||||||
seq2  TTGCAT-GCTGTCCCTGAATGAATCCCACTGTATGAGCAAGTGGCTAATG  97

seq1  TTACTCTCTGTAAACCTCAAAAACACGGTGACCTTCTTGGTAACACACTC  148
      | ||  ||||| ||||||||||||||||||| |||||||   ||||||| 
seq2  TAACCTTCTGT-AACCTCAAAAACACGGTGA-CTTCTTG--TACACACT-  142

seq1  CTTCCTCCATCTTGTCCATCATATTCCCTACACAGAGATAGATTGGGGTC  198
      ||||||||||| ||||||||||| |||||||||||||||||| |||||||
seq2  CTTCCTCCATC-TGTCCATCATAATCCCTACACAGAGATAGA-TGGGGTC  190

seq1  CCGAGGATCTTGAGCCTGTAGAATCAAATGATCAGTATATCAAGACCCAC  248
      ||||||||| |||| |||||||||||||||||||||||||| ||||||||
seq2  CCGAGGATC-TGAG-CTGTAGAATCAAATGATCAGTATATC-AGACCCAC  237

seq1  TCTGATGATCAAATTTACAGACTAGGCCGAAAGGTCAAAGGCACCTCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATCAAATTTACAGACTAGGCCGAAAGGTCAAAGGCACCTCTGT  287

seq1  CAAGAAGCAACTTGAAAGTCTATTGAGGCTTAAATGGATGCAATACATCG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCAACTTGAAAGTCTATTGAGGCTTAAATGGATGCAATACATCG  337

seq1  TAGCAGAAACGTCATGGAGAAAGATACCCACAGCCAGAAAGCAGAGAGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAACGTCATGGAGAAAGATACCCACAGCCAGAAAGCAGAGAGAG  387

seq1  ACAAAATAAATGCTGGTACTCAGATGGGATTTTTTTCTTTTTCTTCAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAATGCTGGTACTCAGATGGGATTTTTTTCTTTTTCTTCAGTC  437

seq1  TGGGACCCAG-CCCATGGGATGATGTGGCGCACTTTCAAGATGGGTTTTC  497
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCAGCCCCATGGGATGATGTGGCGCACTTTCAAGATGGGTTTTC  487

seq1  CTTCTTCAAGTAACACCCTCCTAGATACACTCACGGGTGTGTTTCCATGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAGTAACACCCTCCTAGATACACTCACGGGTGTGTTTCCATGG  537

seq1  TGATTCTAAATCCTATAAAGCTGACAATCAAGATTAACCATCGATGCACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAAATCCTATAAAGCTGACAATCAAGATTAACCATCGATGCACC  587

seq1  CCTGTAGTTTTCAAGTCAGAAGATGGGAAGAGCAGTGTTCCCAAGCTATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGTTTTCAAGTCAGAAGATGGGAAGAGCAGTGTTCCCAAGCTATG  637

seq1  GACCATCTCATTTTACAGCTACACACATTCAGCATAAGGGTAGAACCTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTCATTTTACAGCTACACACATTCAGCATAAGGGTAGAACCTTG  687

seq1  GATGTTAGGTATATACTTTTAGATGATTTGATGAATAATTTTAAGGCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGGTATATACTTTTAGATGATTTGATGAATAATTTTAAGGCCTT  737

seq1  GCTGCCAAAATGTGTTCTCAGAGGGAAACAGGGGAGGGGATATACTGGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAAAATGTGTTCTCAGAGGGAAACAGGGGAGGGGATATACTGGGT  787

seq1  GTTAAACACTCCATTGGTTTTACATACTCTATTTATCAAATTTCGATTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACACTCCATTGGTTTTACATACTCTATTTATCAAATTTCGATTAC  837

seq1  AGACAACAGAATCACTCTAGCTATGTATGCCAAAATGAACGTTTCAGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAGAATCACTCTAGCTATGTATGCCAAAATGAACGTTTCAGAGA  887

seq1  GCCATGTGGTTACAAAGAATGAATAATCTCTAAGCTACCTTACGACATCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGGTTACAAAGAATGAATAATCTCTAAGCTACCTTACGACATCT  937

seq1  ACAGAGCTGGGCCATTGAGAGAAGAAAGCAGAAGTTGCAGGCAGTAATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTGGGCCATTGAGAGAAGAAAGCAGAAGTTGCAGGCAGTAATTA  987

seq1  GAACTCGTAGGTCCACACCACTATTAGGTAGAGCAGGAAGAGGGACCAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGTAGGTCCACACCACTATTAGGTAGAGCAGGAAGAGGGACCAAG  1037

seq1  ACTTCTGGCTCCAAGACTATATGTGTCTGCTAGAACTTACCACAGGAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGCTCCAAGACTATATGTGTCTGCTAGAACTTACCACAGGAAAT  1087

seq1  AGATGCTGTAACTCTTACTGCTTAACTCTGATCTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTAACTCTTACTGCTTAACTCTGATCTGAATTC  1127