BAC Information

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BAC

Clone NameB6Ng01-110P06
Chromosome19 (Build37)
Map Location 9,470,353 - 9,615,389
singlet/doubletdoublet
Overlap geneLOC100040143
Upstream geneC730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137
Downstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P06.bB6Ng01-110P06.g
ACCDH917429DH917430
length1,1461,111
definitionDH917429|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P06, 5' end.DH917430|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,470,353 - 9,471,528)(9,614,262 - 9,615,389)
sequence
gaattcttctttcagtgtctttctttccacaatgttcttctacctcctaa
aatagcagatctcaatatgtgtgttgttatccatttctcaaggattgcat
atcagatatcccacatgttaaatatctacactatgattcttagcagtagc
aaaattacagttataaaatagcaatgaaaataattttttgattggggggt
cacaacaacatgaggaactgtactaacaggaggcagcattaggaatgttg
agaaccattgtcagaaagattctatgaccttcacaaacatctctaccaac
tagggaccaggtgcttaattgcacaaacctatgggaggcatttcttacag
cactacagaaaacgcagtgaaaaggatgtaaagaatgtgcacacttctct
cattgcttattgctaaaaagagcagtttacttttcttgtgtcaatatact
tttaaaaatatgtatggcataagaaacattttattgtgttgtcatttcct
ttaattcctatattcatcaggacattgtgaaaacaagggaagtatattca
aaataaaacaacaaaaaacaaacaaatctctgaagtttgttagagcccct
ttccttatacaaaatgtgcacatgattttttccctaaaactcttcagctg
ctgagctagattgactgagggacacaagtcaatccattcttatttcctaa
gtctgtggacaattcttatttcttaattcttgtaaccctggtgtcagcag
ggctatgagtacatccctagctccaagccccaagcaggaggatcccaagt
gtgctctgtggagatggcagggataaagtgtccagagaccttctccagag
agaggacccatgcagcactagagagagtgagctttctatcctccatctta
cataaaggttgtatgggagatagctctgcatgtgtatgacctgaatgcag
gtagtagacttattagcccttacttttaaagtcacaaaataactataatg
tttgcagtattatgaagtaaaagaaatgcttagaaatcaacaatgtcttc
aactttacagagaagataaatcaagaaagaaactaatgcctgtacttagc
tgctgtaacatggcattccttagtcattagcaaaggtctcatggac
gaattcatgtactcattgaattccttctcaatgtttcttacaggtaaatg
ggaaagctagtgggtttttaatgtcccatttcacattttaatatctttct
gatagagcgtttctgatgtaagagccttttttttagagtccgtttgaatt
attggatgttaacatcttttttttttatttaatttcaattttatctttaa
atattcaaatgttacaacaaagtccctttaaacatctaaagcctgtacga
atatagtagcaaagattcagtagcaaaattattaatttttgaggcacatc
ttctggatttctttcacgtttttcattggaagtgctagtatgacagtgtg
cagtattgggaataaaaatgatggttttttcatacattaattattaaatg
agtaagtagtcatagttgtgcccaaatatatctttattgccacacactgt
attttctcatgaattgattacaaagaatgtatctaacaaaaagtacatat
ctcacaatagtataatctataatagacactatgaaattgttctagccttt
aaagaagataaattcaatgaaattattcaacactattattaaacattaaa
gaaccaaaagttaccaagtagccacatgaccaaactcccatcagctataa
tacattagtataaaaagtatcttattttaaagcagttttatgtgaacaaa
tcaataatgctgaataattatttatagtaaaacttaacactatcagaaac
atgctataaaattgatttggttttaacccattataaaaacatatctaaag
ccgggcgtggtggtgcacgccctttagtcccagcactcgggaggcagagg
caggcggatttctgagttcgaggccagcctggtctacagagtgagttcca
ggacagccagatacacagagaaaccctgtctcgaaaaaacaacaaaaaac
aaacaaaaacaaaaaccatatctaataaactttagactgctatttagact
tgtaaaatagtctagcagactgttctcaaatttgatgtattcattttgac
tacctatgacaggctagatagaaatgataagaattgaagctaggtaagca
gggtttgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9470353_9471528
seq2: B6Ng01-110P06.b_44_1189

seq1  GAATTCTTCTTTCAGTGTCTTTCTTTCCACAATGTTCTTCTACCTCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTCAGTGTCTTTCTTTCCACAATGTTCTTCTACCTCCTAA  50

seq1  AATAGCAGATCTCAATATGTGTGTTGTTATCCATTTCTCAAGGATTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGATCTCAATATGTGTGTTGTTATCCATTTCTCAAGGATTGCAT  100

seq1  ATCAGATATCCCACATGTTAAATATCTACACTATGATTCTTAGCAGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATCCCACATGTTAAATATCTACACTATGATTCTTAGCAGTAGC  150

seq1  AAAATTACAGTTATAAAATAGCAATGAAAATAATTTTTTGATTGGGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAGTTATAAAATAGCAATGAAAATAATTTTTTGATTGGGGGGT  200

seq1  CACAACAACATGAGGAACTGTACTAACAGGAGGCAGCATTAGGAATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAACATGAGGAACTGTACTAACAGGAGGCAGCATTAGGAATGTTG  250

seq1  AGAACCATTGTCAGAAAGATTCTATGACCTTCACAAACATCTCTACCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATTGTCAGAAAGATTCTATGACCTTCACAAACATCTCTACCAAC  300

seq1  TAGGGACCAGGTGCTTAATTGCACAAACCTATGGGAGGCATTTCTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACCAGGTGCTTAATTGCACAAACCTATGGGAGGCATTTCTTACAG  350

seq1  CACTACAGAAAACGCAGTGAAAAGGATGTAAAGAATGTGCACACTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGAAAACGCAGTGAAAAGGATGTAAAGAATGTGCACACTTCTCT  400

seq1  CATTGCTTATTGCTAAAAAGAGCAGTTTACTTTTCTTGTGTCAATATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTATTGCTAAAAAGAGCAGTTTACTTTTCTTGTGTCAATATACT  450

seq1  TTTAAAAATATGTATGGCATAAGAAACATTTTATTGTGTTGTCATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATGTATGGCATAAGAAACATTTTATTGTGTTGTCATTTCCT  500

seq1  TTAATTCCTATATTCATCAGGACATTGTGAAAACAAGGGAAGTATATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCTATATTCATCAGGACATTGTGAAAACAAGGGAAGTATATTCA  550

seq1  AAATAAAACAACAAAAAACAAACAAATCTCTGAAGTTTGTTAGAGCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAACAAAAAACAAACAAATCTCTGAAGTTTGTTAGAGCCCCT  600

seq1  TTCCTTATACAAAATGTGCACATGATTTTTTCCCTAAAACTCTTCAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATACAAAATGTGCACATGATTTTTTCCCTAAAACTCTTCAGCTG  650

seq1  CTGAGCTAGATTGACTGAGGGACACAAGTCAATCCATTCTTATTTCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTAGATTGACTGAGGGACACAAGTCAATCCATTCTTATTTCCTAA  700

seq1  GTCTGTGGACAATTCTTATTTCTTAATTCTTGTAACCCTGGTGTCAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGACAATTCTTATTTCTTAATTCTTGTAACCCTGGTGTCAGCAG  750

seq1  GGCTATGAGTACATCCCTAGCTCCAAGCCCCAAGCAGGAGGATCCCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGAGTACATCCCTAGCTCCAAGCCCCAAGCAGGAGGATCCCAAGT  800

seq1  GTGCTCTGTGGAGATGGCAGGGATAAAGTGTCCAGAGACCTTCTCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGTGGAGATGGCAGGGATAAAGTGTCCAGAGACCTTCTCCAGAG  850

seq1  AGAGGACCCATGCAGCACTAGAGAGAGTGAGCTTTCTATCCTCCATCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCCATGCAGCACTAGAGAGAGTGAGCTTTCTATCCTCCATCTTA  900

seq1  CATAAAGGTTGTATGGGAGATAGCTCTGCATGTGTATGACCTGGAATGCA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATAAAGGTTGTATGGGAGATAGCTCTGCATGTGTATGACCT-GAATGCA  949

seq1  GGGTAGTAGACTTATTAAGCCCTTACTTTTAAAAGGTCACAAAAATAACT  1000
       ||||||||||||||| ||||||||||||||||  ||||| |||||||||
seq2  -GGTAGTAGACTTATT-AGCCCTTACTTTTAAA--GTCAC-AAAATAACT  994

seq1  ATTAATGTTTGCAGTTAATTTAATGAAGTAAAAAGAAATGCCTTAGAAAT  1050
      | |||||||||||||  |||  ||||||| |||||||||| |||||||||
seq2  A-TAATGTTTGCAGT--ATT--ATGAAGT-AAAAGAAATG-CTTAGAAAT  1037

seq1  TCCAACAATTGTCTTTCACTTTACAGGAAGAAAGATAAAATCAAGAAAGA  1100
        |||||| ||||||  |||||||||  || ||||| |||||||||||| 
seq2  --CAACAA-TGTCTTCAACTTTACAG--AG-AAGAT-AAATCAAGAAAG-  1079

seq1  AAACTTATGCTTTGTTACATAAGCTGCTGTACCATGGCCATTTTCTTTAG  1150
      ||||| |||| |   ||| | |||||||||| ||||||    ||| ||||
seq2  AAACTAATGCCT--GTAC-TTAGCTGCTGTAACATGGC---ATTCCTTAG  1123

seq1  TCCCATGAGCCAAAGGTCTCATGGAC  1176
      |  ||| || ||||||||||||||||
seq2  T--CATTAG-CAAAGGTCTCATGGAC  1146

seq1: chr19_9614262_9615389
seq2: B6Ng01-110P06.g_69_1179 (reverse)

seq1  ATAACA----CTGCTTACCTTAGCTTCTATTCTTATCA-TTCTA-CTAGC  44
      ||||||    ||||||||| ||||||| |||||||||| ||||| |||||
seq2  ATAACAAACCCTGCTTACC-TAGCTTCAATTCTTATCATTTCTATCTAGC  49

seq1  CTGTCAATAGGTGAGTCAAAATTGAATACATCAAATTTGAGAACAGTCTT  94
      ||||| |||||| |||||||| |||||||||||||||||||||||||| |
seq2  CTGTC-ATAGGT-AGTCAAAA-TGAATACATCAAATTTGAGAACAGTC-T  95

seq1  GCTTAGACTATTTTACAAAGTCTTAAAATAGCATGTCTTAAAAGTTTAAT  144
      || ||||||||||||| ||||||  |||||||| ||||  ||||||||  
seq2  GC-TAGACTATTTTAC-AAGTCT--AAATAGCA-GTCT--AAAGTTTA--  136

seq1  TTAGATATGGTTTTTTTTGTTTTTTGTTTTGTTTTTTTGTTTGTTTTTTT  194
      ||||||||||||||| || || ||||      |||||||||   ||||||
seq2  TTAGATATGGTTTTTGTTTTTGTTTG------TTTTTTGTT--GTTTTTT  178

seq1  CGAGACAGGGTTTCTCTGTGTATCTTGGCTGTCCTGGAACTCACTCTGTA  244
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTGTATC-TGGCTGTCCTGGAACTCACTCTGTA  227

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGT  277

seq1  GCTGGGACTAAA-GGCGTGCACCACCACGCCCGGCTTTAGATATGTTTTT  343
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACTAAAGGGCGTGCACCACCACGCCCGGCTTTAGATATGTTTTT  327

seq1  ATAATGGGTTAAAACCAAATCAATTTTATAGCATGTTTCTGATAGTGTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGTTAAAACCAAATCAATTTTATAGCATGTTTCTGATAGTGTTA  377

seq1  AGTTTTACTATAAATAATTATTCAGCATTATTGATTTGTTCACATAAAAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACTATAAATAATTATTCAGCATTATTGATTTGTTCACATAAAAC  427

seq1  TGCTTTAAAATAAGATACTTTTTATACTAATGTATTATAGCTGATGGGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAATAAGATACTTTTTATACTAATGTATTATAGCTGATGGGAG  477

seq1  TTTGGTCATGTGGCTACTTGGTAACTTTTGGTTCTTTAATGTTTAATAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCATGTGGCTACTTGGTAACTTTTGGTTCTTTAATGTTTAATAAT  527

seq1  AGTGTTGAATAATTTCATTGAATTTATCTTCTTTAAAGGCTAGAACAATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGAATAATTTCATTGAATTTATCTTCTTTAAAGGCTAGAACAATT  577

seq1  TCATAGTGTCTATTATAGATTATACTATTGTGAGATATGTACTTTTTGTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTGTCTATTATAGATTATACTATTGTGAGATATGTACTTTTTGTT  627

seq1  AGATACATTCTTTGTAATCAATTCATGAGAAAATACAGTGTGTGGCAATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATTCTTTGTAATCAATTCATGAGAAAATACAGTGTGTGGCAATA  677

seq1  AAGATATATTTGGGCACAACTATGACTACTTACTCATTTAATAATTAATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATATTTGGGCACAACTATGACTACTTACTCATTTAATAATTAATG  727

seq1  TATGAAAAAACCATCATTTTTATTCCCAATACTGCACACTGTCATACTAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAAACCATCATTTTTATTCCCAATACTGCACACTGTCATACTAG  777

seq1  CACTTCCAATGAAAAACGTGAAAGAAATCCAGAAGATGTGCCTCAAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCAATGAAAAACGTGAAAGAAATCCAGAAGATGTGCCTCAAAAAT  827

seq1  TAATAATTTTGCTACTGAATCTTTGCTACTATATTCGTACAGGCTTTAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTTGCTACTGAATCTTTGCTACTATATTCGTACAGGCTTTAGA  877

seq1  TGTTTAAAGGGACTTTGTTGTAACATTTGAATATTTAAAGATAAAATTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAGGGACTTTGTTGTAACATTTGAATATTTAAAGATAAAATTGA  927

seq1  AATTAAATAAAAAAAAAAAGATGTTAACATCCAATAATTCAAACGGACTC  993
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAT-AAAAAAAAAAGATGTTAACATCCAATAATTCAAACGGACTC  976

seq1  TAAAAAAAAGGCTCTTACATCAGAAACGCTCTATCAGAAAGATATTAAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGGCTCTTACATCAGAAACGCTCTATCAGAAAGATATTAAAA  1026

seq1  TGTGAAATGGGACATTAAAAACCCACTAGCTTTCCCATTTACCTGTAAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGGGACATTAAAAACCCACTAGCTTTCCCATTTACCTGTAAGA  1076

seq1  AACATTGAGAAGGAATTCAATGAGTACATGAATTC  1128
      |||||||||||||||||||||||||||||||||||
seq2  AACATTGAGAAGGAATTCAATGAGTACATGAATTC  1111