BAC Information

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BAC

Clone NameB6Ng01-111C19
Chromosome19 (Build37)
Map Location 23,638,778 - 23,857,075
singlet/doubletdoublet
Overlap gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
Upstream geneTrpm3, Klf9, Smc5, Mamdc2
Downstream geneGm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C19.bB6Ng01-111C19.g
ACCDH917593DH917594
length8411,079
definitionDH917593|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C19, 5' end.DH917594|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,856,243 - 23,857,075)(23,638,778 - 23,639,844)
sequence
gaattccaaagaatcaaaaggaatgaaataaggcagaaaccagtaagtta
gtgaatgaggatggaaagaggagtaagagcacagtacactatgtgtataa
atgagaatggtataaagaaacgttattttgtacaatgaatgtagtaagaa
aggatgaagatggtttgataagagaaacatctcaaccgactagttccaaa
tagatgattcctagaaacagaaaactagagaaattatgacagatatgaca
gaggcttagaaacacaagcatggggagttttaactgagagaactcaggga
aggcacccaggcatagcacaaagagtggcagctcccagagcgggggcggg
gcgggggcggggcggagccggagggcgggaacaggggggtgagtgtgtgc
ccttggtttgcataggttggtttgcataaaggaagtggggaatgtttgtt
gaggactgtaaagtaggctagacagaactgtcccgtgctgtggaagtaga
gtctgctctgggataagcagggagctgctgatggattctgagcaaagcga
tgagagtggtcctccaggaagatgcccaatatcttcagaggagagactga
tgagggctctagcaggggttatgacagagccagccacagaaaaataagaa
tctatactttagcaattgaaggtgcgtgtggggatggaagtggagggaga
gcgggaggactattagatgcttgccaaggagttgagcttagaagcagtca
ctagatcttttagtagaggaagccggggtcgttctttagatgacattttg
agaaatgaggctgaaatgtaaggttttagaaccctggttga
gaattctccgaggttgtgtcaaattggaggagtggtgttctgggagccaa
tggtgcccatgactgggtctaaaaagaagtgaaggcagaaaggagcagtg
gccaggagattagtgtagatctaggatgaccagggaggttaaagtattca
gtggaagccactaacactaactttgaaagatgcaacagtacaaaatgcaa
cgggatgaatccatttctagtcacctgagcatatgctgctcagaaaaggg
ttaagggaattgaataaaacatgctggtgaaaggcaccgaacacaggaat
gctgggtgtagacagccctgcagacaccggaagccactgaagctgcagca
agagcataaagaaggctagcctggggaaaaccggccaaggaggtttcttc
ttctcattcgtttgttgtgcttccctgtttctcttctatggattatggca
aggccccctaggatgttaccataggcttctgggcgagtgggtttctcaac
tgactttcacatagttcagacaagtgacatgttttatcattatagactga
taacaccattcatagcatctttacataacaggctggcccaagcccacgat
gcctcacaccctgtgcttactggttgctatattcttattctttaagattt
aaagaagcatgggtttagtcacccatatttctgtgaataaacgactcctg
actctaccagaggttatgtggggtaccctttgtgtaccattgtctctgta
tcatttatttccctgataaaatgacagtggctgttccttcgccaacttgc
gtaccaaacccctcagtcaactattctaatccttccaaaaagccattctg
agggtatattctttcgatttcattctatggtccttgggttcccttccaat
ggatagttttggtttttcaagggcatttttcagttggcgacaagccttct
gggaacattgttaactgcctaatttttgtctcattaatttgaaagcagtt
taagtccctccatccggttcctccataaaccgtgtaaatgggcctgtttc
ccgcccaaatctacccattgaaactaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23856243_23857075
seq2: B6Ng01-111C19.b_48_888 (reverse)

seq1  TCAACCAGTGTCTTAAAACCTTCCATTTCAGCCTC-CTTCTCAAACTGTC  49
      |||||||| ||  ||||||||| ||||||||||||  |||||||| ||||
seq2  TCAACCAGGGTTCTAAAACCTTACATTTCAGCCTCATTTCTCAAAATGTC  50

seq1  ATCT-AAGAACGGCCCCGGC-TCCTCTACTAAATGATCTAGTGACTGCTT  97
      |||| ||||||| ||||||| |||||||||||| ||||||||||||||||
seq2  ATCTAAAGAACGACCCCGGCTTCCTCTACTAAAAGATCTAGTGACTGCTT  100

seq1  CT-AGCTCAACTCCTTGGC-AGCATCTAATAGTCCTCCCGCTCTCCCTCC  145
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAAGCTCAACTCCTTGGCAAGCATCTAATAGTCCTCCCGCTCTCCCTCC  150

seq1  ACTTCCATCCCCACACGCACCTTCAATTGCTAAAGTATAGATTCTTA-TT  194
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTTCCATCCCCACACGCACCTTCAATTGCTAAAGTATAGATTCTTATTT  200

seq1  TTCTGTGGCTGGCTCTGTCATAA-CCCTGCTAGAGCCCTCATCAGTCTCT  243
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTGTGGCTGGCTCTGTCATAACCCCTGCTAGAGCCCTCATCAGTCTCT  250

seq1  CCTCTGAAGATATTGGGCATCTTCCTGGAGGACCACTCTCATCGC-TTGC  292
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTCTGAAGATATTGGGCATCTTCCTGGAGGACCACTCTCATCGCTTTGC  300

seq1  TCAGAATCCATCAGCAGCTCCCTGCTTATCCCAGAGCAGACTCTACTTCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCCATCAGCAGCTCCCTGCTTATCCCAGAGCAGACTCTACTTCC  350

seq1  ACAGCACGGGACAGTTCTGTCTAGCCTACTTTACAGTCCTCAACAAACAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACGGGACAGTTCTGTCTAGCCTACTTTACAGTCCTCAACAAACAT  400

seq1  TCCCCACTTCCTTTATGCAAACCAACCTATGCAAACCAAGGGCACACACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTTCCTTTATGCAAACCAACCTATGCAAACCAAGGGCACACACT  450

seq1  CACCCCCCTGTTCCCGCCCTCCGGCTCCGCCCCGCCCCCGCCCCGCCCCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCTGTTCCCGCCCTCCGGCTCCGCCCCGCCCCCGCCCCGCCCCC  500

seq1  GCTCTGGGAGCTGCCACTCTTTGTGCTATGCCTGGGTGCCTTCCCTGAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGAGCTGCCACTCTTTGTGCTATGCCTGGGTGCCTTCCCTGAGT  550

seq1  TCTCTCAGTTAAAACTCCCCATGCTTGTGTTTCTAAGCCTCTGTCATATC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGTTAAAACTCCCCATGCTTGTGTTTCTAAGCCTCTGTCATATC  600

seq1  TGTCATAATTTCTCTAGTTTTCTGTTTCTAGGAATCATCTATTTGGAACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAATTTCTCTAGTTTTCTGTTTCTAGGAATCATCTATTTGGAACT  650

seq1  AGTCGGTTGAGATGTTTCTCTTATCAAACCATCTTCATCCTTTCTTACTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGTTGAGATGTTTCTCTTATCAAACCATCTTCATCCTTTCTTACTA  700

seq1  CATTCATTGTACAAAATAACGTTTCTTTATACCATTCTCATTTATACACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTGTACAAAATAACGTTTCTTTATACCATTCTCATTTATACACA  750

seq1  TAGTGTACTGTGCTCTTACTCCTCTTTCCATCCTCATTCACTAACTTACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTACTGTGCTCTTACTCCTCTTTCCATCCTCATTCACTAACTTACT  800

seq1  GGTTTCTGCCTTATTTCATTCCTTTTGATTCTTTGGAATTC  833
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGCCTTATTTCATTCCTTTTGATTCTTTGGAATTC  841

seq1: chr19_23638778_23639844
seq2: B6Ng01-111C19.g_70_1148

seq1  GAATTCTCCGAGGTTGTGTCAAATTGGAGGAGTGGTGTTCTGGGAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGAGGTTGTGTCAAATTGGAGGAGTGGTGTTCTGGGAGCCAA  50

seq1  TGGTGCCCATGACTGGGTCTAAAAAGAAGTGAAGGCAGAAAGGAGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCATGACTGGGTCTAAAAAGAAGTGAAGGCAGAAAGGAGCAGTG  100

seq1  GCCAGGAGATTAGTGTAGATCTAGGATGACCAGGGAGGTTAAAGTATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGATTAGTGTAGATCTAGGATGACCAGGGAGGTTAAAGTATTCA  150

seq1  GTGGAAGCCACTAACACTAACTTTGAAAGATGCAACAGTACAAAATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGCCACTAACACTAACTTTGAAAGATGCAACAGTACAAAATGCAA  200

seq1  CGGGATGAATCCATTTCTAGTCACCTGAGCATATGCTGCTCAGAAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATGAATCCATTTCTAGTCACCTGAGCATATGCTGCTCAGAAAAGGG  250

seq1  TTAAGGGAATTGAATAAAACATGCTGGTGAAAGGCACCGAACACAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGAATTGAATAAAACATGCTGGTGAAAGGCACCGAACACAGGAAT  300

seq1  GCTGGGTGTAGACAGCCCTGCAGACACCGGAAGCCACTGAAGCTGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGTAGACAGCCCTGCAGACACCGGAAGCCACTGAAGCTGCAGCA  350

seq1  AGAGCATAAAGAAGGCTAGCCTGGGGAAAACCGGCCAAGGAGGTTTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAAAGAAGGCTAGCCTGGGGAAAACCGGCCAAGGAGGTTTCTTC  400

seq1  TTCTCATTCGTTTGTTGTGCTTCCCTGTTTCTCTTCTATGGATTATGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCGTTTGTTGTGCTTCCCTGTTTCTCTTCTATGGATTATGGCA  450

seq1  AGGCCCCCTAGGATGTTACCATAGGCTTCTGGGCGAGTGGGTTTCTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCCTAGGATGTTACCATAGGCTTCTGGGCGAGTGGGTTTCTCAAC  500

seq1  TGACTTTCACATAGTTCAGACAAGTGACATGTTTTATCATTATAGACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCACATAGTTCAGACAAGTGACATGTTTTATCATTATAGACTGA  550

seq1  TAACACCATTCATAGCATCTTTACATAACAGGCTGGCCCAAGCCCACGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCATTCATAGCATCTTTACATAACAGGCTGGCCCAAGCCCACGAT  600

seq1  GCCTCACACCCTGTGCTTACTGGTTGCTATATTCTTATTCTTTAAGA-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCTCACACCCTGTGCTTACTGGTTGCTATATTCTTATTCTTTAAGATTT  650

seq1  AAAGAAGCAT-GGTTTAGTCACCCATA-TTCTGTGAATAAACGACTCCTG  697
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  AAAGAAGCATGGGTTTAGTCACCCATATTTCTGTGAATAAACGACTCCTG  700

seq1  ACTCTACCAGAGGTTATGT-GGGTACCC-TTGTGTACCATTGTCTCCTGT  745
      ||||||||||||||||||| |||||||| |||||||||||||||| ||||
seq2  ACTCTACCAGAGGTTATGTGGGGTACCCTTTGTGTACCATTGTCT-CTGT  749

seq1  ATCATTTATTTCCCTGATAAAATGACAGT-GCTGTTCCTTCGCCAACTTG  794
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATCATTTATTTCCCTGATAAAATGACAGTGGCTGTTCCTTCGCCAACTTG  799

seq1  CGTACCAAA-CCCTCAGTCAACTATTCTAATCCTTCCAAAAAGCCATTCT  843
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCAAACCCCTCAGTCAACTATTCTAATCCTTCCAAAAAGCCATTCT  849

seq1  GAGGTTATATTCTTTCTGATTTCATTCTAT-GTCCTT-GGTTCCTTTCCA  891
      |||| ||||||||||| ||||||||||||| |||||| |||||| |||||
seq2  GAGGGTATATTCTTTC-GATTTCATTCTATGGTCCTTGGGTTCCCTTCCA  898

seq1  ATTGGATAGTTTT-GTTTTTCAAGGTCA-TTTTCAGTTGGCGACAAGCCT  939
      | ||||||||||| ||||||||||| || |||||||||||||||||||||
seq2  A-TGGATAGTTTTGGTTTTTCAAGGGCATTTTTCAGTTGGCGACAAGCCT  947

seq1  TCT-GGAACATTGTTAACTGCCTAA-TTTTGTCTCA-TAATTTGAAAGCA  986
      ||| ||||||||||||||||||||| |||||||||| |||||||||||||
seq2  TCTGGGAACATTGTTAACTGCCTAATTTTTGTCTCATTAATTTGAAAGCA  997

seq1  GTTTCAGTCCCTCCATCCGGTTCATCCATAAA-CGTGTATAATGGG-CTG  1034
      |||| |||||||||||||||||| |||||||| |||||| |||||| |||
seq2  GTTTAAGTCCCTCCATCCGGTTCCTCCATAAACCGTGTA-AATGGGCCTG  1046

seq1  TTTCCCGGCCAAATCAGTCACTATGAACTAACC  1067
      ||||||| |||||||   |  |   ||||||||
seq2  TTTCCCGCCCAAATCTACCCATTGAAACTAACC  1079