BAC Information

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BAC

Clone NameB6Ng01-111D07
Chromosome19 (Build37)
Map Location 23,009,859 - 23,011,093
singlet/doubletsinglet
Overlap geneTrpm3
Upstream geneEG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D07.bB6Ng01-111D07.g
ACCDH917615DH917616
length1,0761,196
definitionDH917615|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D07, 5' end.DH917616|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagaatggttgtatcagtttgcaatcctatgagcaatggaggac
cgttcctctttctctacatcctcaccagcatgtgctgtcacttgagtttt
tgatcttagccactctgactggtatgaggtggaatctcagggtcattttg
atctacatttctctgatgactaaggactttgaacatttctttaggtgctt
cttagccatctgtgattttctgttgtgaattctctgtttagctttgtacc
ccatttttattttttatatatatttttattgaatttttccttatttacat
ttcaaatgtttccccttttcaggtctccccttcagaaacgcccatccaat
ttcttcctcccgtgcctctatgagggtgctccccacccatccactcctat
cctcccaccctggtaaaatgttctgtagatatctgttaaatccatttggg
tcataacttctgttaatatcactgtgtccctgtttagtttctctgtcaat
ggcctgtccattggtgagagtggggtattgaagtctctcactattaatgt
atgagattcaatgtgtgttttgagctttagtaaagtttcttttttgaatg
tgagtgaccttgcatttgagacacagatgttcagaattgagactttctct
tggtagatttttcctttgatgaatatgatgtgtccttccctcgtttgata
acttttggttgaaagtctattttatcagatatcacaatgataactccagc
ttgtttcttgggaccatttgcttgggaaactttttttttcagccttttaa
tccgaggtagtttctgtctttgtcactgaagtgtgtttcttgtatgcagc
aaaatgctggatcctgtttaagtatccagtctgttagcctgtgtcttttt
attggagaatttaatccattgatgttgagaatattaagacagatgattgt
cagttctattattttgttgctggaggtggtcttatgggtgtgtgattctc
tctttgggttggttgaaatgtatttcttgggtttcttgggttaggtactc
ctaggtgggagaattcctctagtatc
gaattcaactgaccatggtaagaaagaaaccaatatatttgcacggctga
ttggcttatttgggacttactgtgtggctgatctggcctgccttctgttc
ttgtaaataaagttttattgacatatggtcatatctacctgtttactgat
tgtctaggaccactttggggacacagtggcaacactgtaaactatgagac
cacattgccttgaaacaatcagatgttgatctagtcatttctgaaaaaaa
aaaaaaaatgtgctcacatctacctacctgacctggtgtacacatttctt
aagacaggaccacatctgaatagtttttgatttcctcttgggccttgtgg
gtaccaagcaagaatttaagaatgtggaatgaaagatcccaaggtgggat
agagtggccctttgagcttcaagtatggcatcttgaagagactcctggga
gtgtcaagtcttgttttatagctaccaagctcagctattaaagaaggcac
aatcatgtttctaccaccaatgatgctatggtttttcttttctttttggg
ccaggtctactcttttctcagcctccccagctgctgggatttcaagtctg
tgacaccatgcacagctctagattgctggaacttgtctgtgatttgactt
ttcaacatcatgtaatgaaagctcggtatgctgtgtgctgttgcaataga
gacctttaaaagctggggtccatgtgaaggtaattaggttatggagacat
cccaaaaagatacttattgtagtcatgcagagtgggtctgctctctcaag
agtggggttttataaaacagggtgcccttgctctttggtaatctgtctct
tttttcttgtgcttccatgtgatttcttcctctctcagagtgggggtttt
ataaacagggtgcccttgctcttggtatctgtctcttttttctgtgctgc
catgtgatttcttctcacatgtcccaccattatgacaacattatcatgag
cctccacagagccagagatgcactatcagctgctaactcatgagctgcag
aacttgatcgaaatgcctctttcttcctccctatctttctttcctctcct
tttagaaaaaatacaaactttgagtctgcttggaaccttcaagtgcgtgg
atccgcatgatacagccgtaatcctttatgtgaaaagcctggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23009859_23011093
seq2: B6Ng01-111D07.g_68_1263 (reverse)

seq1  CAAACCAGGCTTTTTTTACA-ATAAAAGATTTATCTAGGCTTGGTGATCC  49
      ||||||||||||||    || ||||| ||||      ||||  || || |
seq2  CAAACCAGGCTTTT----CACATAAAGGATT----ACGGCT--GT-AT-C  38

seq1  ATGCCTGTATCCCAGCACTTGAAGGTTCAAGCAGGAGACTCAAAAGTTTG  99
      ||||  | ||||  |||||||||||||| |  || |||||| ||||||| 
seq2  ATGC--GGATCCACGCACTTGAAGGTTCCA--AGCAGACTC-AAAGTTT-  82

seq1  GTAATATCTCTCTAAAAGAGAGAGAAAAGAAAAGATAAGGGGAAGAAAGA  149
      |||   | | |||||||| ||||| |||| |||||||   || || ||||
seq2  GTA--TTTTTTCTAAAAG-GAGAGGAAAG-AAAGATA---GGGAGGAAGA  125

seq1  AAGAGGGCATCTCTGCTC-AGTTCTGCAGCTCCATGAGGTAGCAGCTTGA  198
      |||| ||||| || | || |||||||||||| |||||| ||||||| |||
seq2  AAGA-GGCATTTC-GATCAAGTTCTGCAGCT-CATGAGTTAGCAGC-TGA  171

seq1  TAGTGGCATCTTCTGGGCTCTGGTGAGGGCTTCATGATAAATGTTGTCAT  248
      |||| ||||| ||| |||||||  ||||   ||||||| |||||||||||
seq2  TAGT-GCATC-TCT-GGCTCTGTGGAGG--CTCATGAT-AATGTTGTCAT  215

seq1  AATGGTGGGAACATGTGAGGAAGAAATCACATGGCAGCACAAGAAAAAAG  298
      ||||||||| |||||||| ||||||||||||||||||||| |||||||||
seq2  AATGGTGGG-ACATGTGA-GAAGAAATCACATGGCAGCAC-AGAAAAAAG  262

seq1  AGACAGATTACCAAAGAGCAAGGGCACCCTGTTTTATAAAA-CCCCACTC  347
      ||||||| |||| |||||||||||||||||| ||||||||| ||||||||
seq2  AGACAGA-TACC-AAGAGCAAGGGCACCCTG-TTTATAAAACCCCCACTC  309

seq1  TTGAGAGAGGAAGAAATCACATGGAAGCACAAGAAAAAAGAGACAGATTA  397
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGAGAGAGGAAGAAATCACATGGAAGCACAAGAAAAAAGAGACAGATTA  358

seq1  CCAAAGAGCAAGGGCACCCTGTTTTATAAAACCCCACTCTTGAGAGAGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGCAAGGGCACCCTGTTTTATAAAACCCCACTCTTGAGAGAGCA  408

seq1  GACCCACTCTGCATGACTACAATAAGTATCTTTTTGGGATGTCTCCATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTCTGCATGACTACAATAAGTATCTTTTTGGGATGTCTCCATAA  458

seq1  CCTAATTACCTTCACATGGACCCCAGCTTTTAAAGGTCTCTATTGCAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTACCTTCACATGGACCCCAGCTTTTAAAGGTCTCTATTGCAACA  508

seq1  GCACACAGCATACCGAGCTTTCATTACATGATGTTGAAAAGTCAAATCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCATACCGAGCTTTCATTACATGATGTTGAAAAGTCAAATCAC  558

seq1  AGACAAGTTCCAGCAATCTAGAGCTGTGCATGGTGTCACAGACTTGAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTCCAGCAATCTAGAGCTGTGCATGGTGTCACAGACTTGAAAT  608

seq1  CCCAGCAGCTGGGGAGGCTGAGAAAAGAGTAGACCTGGCCCAAAAAGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGCTGGGGAGGCTGAGAAAAGAGTAGACCTGGCCCAAAAAGAAA  658

seq1  AGAAAAACCATAGCATCATTGGTGGTAGAAACATGATTGTGCCTTCTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCATAGCATCATTGGTGGTAGAAACATGATTGTGCCTTCTTTA  708

seq1  ATAGCTGAGCTTGGTAGCTATAAAACAAGACTTGACACTCCCAGGAGTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAGCTTGGTAGCTATAAAACAAGACTTGACACTCCCAGGAGTCT  758

seq1  CTTCAAGATGCCATACTTGAAGCTCAAAGGGCCACTCTATCCCACCTTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGATGCCATACTTGAAGCTCAAAGGGCCACTCTATCCCACCTTGG  808

seq1  GATCTTTCATTCCACATTCTTAAATTCTTGCTTGGTACCCACAAGGCCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCATTCCACATTCTTAAATTCTTGCTTGGTACCCACAAGGCCCA  858

seq1  AGAGGAAATCAAAAACTATTCAGATGTGGTCCTGTCTTAAGAAATGTGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATCAAAAACTATTCAGATGTGGTCCTGTCTTAAGAAATGTGTA  908

seq1  CACCAGGTCAGGTAGGTAGATGTGAGCACATTTTTTTTTTTTTTTCAGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTCAGGTAGGTAGATGTGAGCACATTTTTTTTTTTTTTTCAGAA  958

seq1  ATGACTAGATCAACATCTGATTGTTTCAAGGCAATGTGGTCTCATAGTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGATCAACATCTGATTGTTTCAAGGCAATGTGGTCTCATAGTTT  1008

seq1  ACAGTGTTGCCACTGTGTCCCCAAAGTGGTCCTAGACAATCAGTAAACAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGCCACTGTGTCCCCAAAGTGGTCCTAGACAATCAGTAAACAG  1058

seq1  GTAGATATGACCATATGTCAATAAAACTTTATTTACAAGAACAGAAGGCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATGACCATATGTCAATAAAACTTTATTTACAAGAACAGAAGGCA  1108

seq1  GGCCAGATCAGCCACACAGTAAGTCCCAAATAAGCCAATCAGCCGTGCAA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATCAGCCACACAGTAAGTCCCAAATAAGCCAATCAGCCGTGCAA  1158

seq1  ATATATTGGTTTCTTTCTTACCATGGTCAGTTGAATTC  1235
      ||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGGTTTCTTTCTTACCATGGTCAGTTGAATTC  1196