BAC Information

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BAC

Clone NameB6Ng01-111N02
Chromosome19 (Build37)
Map Location 31,180,959 - 31,297,453
singlet/doubletdoublet
Overlap genePrkg1, 8430431K14Rik
Upstream geneGldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995, Cstf2t
Downstream gene1810073H04Rik, Asah2, EG668042, Sgms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111N02.bB6Ng01-111N02.g
ACCDH918058DH918059
length1,193192
definitionDH918058|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N02, 5' end.DH918059|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,296,250 - 31,297,453)(31,180,959 - 31,181,150)
sequence
gaattcttaggtctatacagcctcattgggcgtattgccatatctttcgt
taaaaagactatatagttgttaggctacataattgtctcatttcccacag
acaccaaacaaaaacaaaaacaaacaacaacaaaaactttgtagagggca
gcacaactaaaagaagctgtcaacaattgtatagaatttccacatgatta
ccccagatcattattatctgaggtctcagttattgtggtcatccctgttg
taagtggacataaaaaaacacagaaaagctacactcatactaaagaacca
tttcttatttccataaatgagtggagacagaaaaaaagcaaggatgtctc
gaagaagacagatgacatactgttggcccttaagcgcattctttaaagca
aagttgaagcaatgactacccctgaagagaatatttttatgagtctaggt
gcctattcatatctctcctttgaggagcaatgcaacaagttcttcttaat
cattaagggtaataagctagcaacccctccctcatcactaaaactatttt
taagatagagtcatagaatcagcagttgttttcttggtgatttcatttca
atggttaagtcttaaattctgttatttttctattggtatatatactcaaa
attactaggtatcttttccctacacaagtttacagtgggtcatagagttt
ttatttatttgtatgtactgccaaacactattgaaaagatttttgtaacc
aatctacaaaacaattctactaaaattaggaaaaacaatgtatctggttt
ctccactcattctacatagtacttgaagtgttagacagcaacagaagaga
agggagtaaaagagacatgaaagaaaaatgaggatgtcaaagtgatcctg
tacaagagccccttgaaatagaaattgtcctacccagaatgatccttcat
tgataaaggtcaaccgtctacttgaaactgaacttcaccttgtattttga
attgagcatcttttatctattttacaggtgaagcagtgatgattgtacct
tcatctgaatggtacaaatttggccctgtgagtatgtgactaatagcagc
tgaagacctgtcttgtacttgataagagcagttcttttcccatgaagtag
cctacttgatacaaagcaccttcctggaatatgatataggaac
catcctgaggtcctgttttccgaggcggacccacaaagtgagggtctgaa
cacacatggggaatgcaagtcaattctcctccagtaactgcaataactgg
cattacctttggatatattcacacacaaaaaagtgtgtgtgtgtgtgaga
gagagggagagagagagagagagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31296250_31297453
seq2: B6Ng01-111N02.b_47_1239 (reverse)

seq1  GTTCCTATTAATCATATATCCAGGAA-GTGCTTTGTATCAAGTAAGGCCT  49
      ||||||||  ||||||| |||||||| |||||||||||||||||  | ||
seq2  GTTCCTAT--ATCATAT-TCCAGGAAGGTGCTTTGTATCAAGTA--GGCT  45

seq1  ACTTCATTGGAAAAGAACTGGCTCTTATCAAAGTAACAAAGAACAGCTCT  99
      ||||||| ||||||||||| ||||||||| |||| ||||   |||| |||
seq2  ACTTCATGGGAAAAGAACT-GCTCTTATC-AAGT-ACAA--GACAGGTCT  90

seq1  TCAGCTGCTATTAAGTCACATACTTCCACAAGGGCAAATTTGTTACCAAT  149
      |||||||||||| |||||||||||  |||| || |||||||| |||| ||
seq2  TCAGCTGCTATT-AGTCACATACT--CACAGGGCCAAATTTG-TACC-AT  135

seq1  TCAGATGAAGGTACAATCATCCACTGCTTCA-CTGTAATATAGAATAAAA  198
      |||||||||||||||||||| |||||||||| |||||| |||| ||||||
seq2  TCAGATGAAGGTACAATCAT-CACTGCTTCACCTGTAAAATAG-ATAAAA  183

seq1  GATGCTCAATTC-AAATAC-AGGTGAAGTTCAGTTTCAAGTAGACGGTTG  246
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  GATGCTCAATTCAAAATACAAGGTGAAGTTCAGTTTCAAGTAGACGGTTG  233

seq1  ACCTTTATCAATGAA-GATCATTCTGGGTAGGAC-ATTTCTATTTCAAGG  294
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  ACCTTTATCAATGAAGGATCATTCTGGGTAGGACAATTTCTATTTCAAGG  283

seq1  GGCTCTTGTACAGGATCACTTTGACATCCTCATTTTTCTTTCATGTCTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGTACAGGATCACTTTGACATCCTCATTTTTCTTTCATGTCTCT  333

seq1  TTTACTTCCTTCTCTTCTGTTGCTGTCTAACACTTCAAGTACTATGTAGA  394
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCCTTCTCTTCTGTTGCTGTCTAACACTTCAAGTACTATGTAGA  383

seq1  ATGAGTGGAGAAACCAGATACATTGTTTTTCCTAATTTTAGTAGAATTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGAGAAACCAGATACATTGTTTTTCCTAATTTTAGTAGAATTGT  433

seq1  TTTGTAGATTGGTTACAAAAATCTTTTCAATAGTGTTTGGCAGTACATAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGATTGGTTACAAAAATCTTTTCAATAGTGTTTGGCAGTACATAC  483

seq1  AAATAAATAAAAACTCTATGACCCACTGTAAACTTGTGTAGGGAAAAGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAAACTCTATGACCCACTGTAAACTTGTGTAGGGAAAAGAT  533

seq1  ACCTAGTAATTTTGAGTATATATACCAATAGAAAAATAACAGAATTTAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTAATTTTGAGTATATATACCAATAGAAAAATAACAGAATTTAAG  583

seq1  ACTTAACCATTGAAATGAAATCACCAAGAAAACAACTGCTGATTCTATGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACCATTGAAATGAAATCACCAAGAAAACAACTGCTGATTCTATGA  633

seq1  CTCTATCTTAAAAATAGTTTTAGTGATGAGGGAGGGGTTGCTAGCTTATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTTAAAAATAGTTTTAGTGATGAGGGAGGGGTTGCTAGCTTATT  683

seq1  ACCCTTAATGATTAAGAAGAACTTGTTGCATTGCTCCTCAAAGGAGAGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAATGATTAAGAAGAACTTGTTGCATTGCTCCTCAAAGGAGAGAT  733

seq1  ATGAATAGGCACCTAGACTCATAAAAATATTCTCTTCAGGGGTAGTCATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGGCACCTAGACTCATAAAAATATTCTCTTCAGGGGTAGTCATT  783

seq1  GCTTCAACTTTGCTTTAAAGAATGCGCTTAAGGGCCAACAGTATGTCATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACTTTGCTTTAAAGAATGCGCTTAAGGGCCAACAGTATGTCATC  833

seq1  TGTCTTCTTCGAGACATCCTTGCTTTTTTTCTGTCTCCACTCATTTATGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCGAGACATCCTTGCTTTTTTTCTGTCTCCACTCATTTATGG  883

seq1  AAATAAGAAATGGTTCTTTAGTATGAGTGTAGCTTTTCTGTGTTTTTTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAATGGTTCTTTAGTATGAGTGTAGCTTTTCTGTGTTTTTTTA  933

seq1  TGTCCACTTACAACAGGGATGACCACAATAACTGAGACCTCAGATAATAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTTACAACAGGGATGACCACAATAACTGAGACCTCAGATAATAA  983

seq1  TGATCTGGGGTAATCATGTGGAAATTCTATACAATTGTTGACAGCTTCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGGGGTAATCATGTGGAAATTCTATACAATTGTTGACAGCTTCTT  1033

seq1  TTAGTTGTGCTGCCCTCTACAAAGTTTTTGTTGTTGTTTGTTTTTGTTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTGCTGCCCTCTACAAAGTTTTTGTTGTTGTTTGTTTTTGTTTT  1083

seq1  TGTTTGGTGTCTGTGGGAAATGAGACAATTATGTAGCCTAACAACTATAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGTCTGTGGGAAATGAGACAATTATGTAGCCTAACAACTATAT  1133

seq1  AGTCTTTTTAACGAAAGATATGGCAATACGCCCAATGAGGCTGTATAGAC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTTAACGAAAGATATGGCAATACGCCCAATGAGGCTGTATAGAC  1183

seq1  CTAAGAATTC  1204
      ||||||||||
seq2  CTAAGAATTC  1193

seq1: chr19_31180959_31181150
seq2: B6Ng01-111N02.g_72_263

seq1  CATCCTGAGGTCCTGTTTTCCGAGGCGGACCCACAAAGTGAGGGTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAGGTCCTGTTTTCCGAGGCGGACCCACAAAGTGAGGGTCTGAA  50

seq1  CACACATGGGGAATGCAAGTCAATTCTCCTCCAGTAACTGCAATAACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGGGGAATGCAAGTCAATTCTCCTCCAGTAACTGCAATAACTGG  100

seq1  CATTACCTTTGGATATATTCACACACAAAAAAGTGTGTGTGTGTGTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTTTGGATATATTCACACACAAAAAAGTGTGTGTGTGTGTGAGA  150

seq1  GAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  192