BAC Information

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BAC

Clone NameB6Ng01-112L19
Chromosome19 (Build37)
Map Location 27,037,519 - 27,219,626
singlet/doubletdoublet
Overlap geneLOC100042576
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
Downstream geneVldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612, Rfx3, LOC666997, LOC433235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112L19.bB6Ng01-112L19.g
ACCDH918724DH918725
length2391,151
definitionDH918724|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L19, 5' end.DH918725|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,037,519 - 27,037,756)(27,218,480 - 27,219,626)
sequence
gaattctctctgtagaccaggctggtcccttaactcagaaatccgctgag
tgaaatattgcactcttccactattgctatctcagaacctaagtaacttt
tatgtctttaaatatttgttttatgaacctaagagactaaagatactgca
caaaaatttatattctaattgatccttggataatatgtagtgagctgttt
ttgttgttgttgttgttgttgttgttgttgttgttgttt
gaattcatctccaccttccctttcactcagagggtggcctcttatttgca
gccgtgggatggaatcagtgaaccaaacacttgaaaccaatttgctggtt
ttcgaagaggttattgattctcacagcgggcatctgcttagaaaacttca
ttgtttaactctccatgtggatgattcttgccacacactgtcttaagtcg
ggcagattgtgcatggtgtatattctgtcttggctatattggcatcttca
gaggagttgagaaatgtttaacaggtccgactgttgccttgagttaaaaa
tacctgtacgtgctccagaggaaatgtctgatttggtgatagatatttat
tataagcatgtgccttgctttgagggtggatgctgagagagatgtttctg
ggcattttgcacagtgccgagaagacaatagaagtgattgataaacacac
aattaagtaaatatattttttgggtctttctttttcttgtgtgaaagtat
aattgcttgagatgttggtgatttatggcttttcagaagccctgttcttc
atatagaaaagtcatagtttagtgacctgaatttttactctttcagtaaa
aggcagcttcttttctcactacaaaagagctccggggacacccgtgctca
ctgcaggacctcttgtgggatgttttgtttgttttactgcatagtaaaaa
ttcaagtgagtaacagtcagcttttgagtgggtgagaatgagcaaaaaac
tcagtgtgtttgaagttagttcctgctctgcgttttatggaaactgaggg
tggggcgtgtagctcactgggagagcacctgttagcctgtctaagtccct
gttgaagttcatgccagcactggaaaaatgaacagaataaaattaatgag
gtaaaacgaataatatgttagatgatcatggtacaaactgatcattgctt
cctctcacacttggtagggtgagtcttacccggccctgactatcaacctc
cttactttccttataatgctgttattacccccaggaaaggcatctttcag
acagaaagcttgacaatttggatgcagcctgagtagccctgatttgcaga
gagtgatttcttttttctacggcccattggaatagtgatccatgggtgag
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27037519_27037756
seq2: B6Ng01-112L19.b_45_283

seq1  GAATTCTCTCTGTAGACCAGGCTGGTCCC-GAACTCAGAAATCCGCTGAG  49
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  GAATTCTCTCTGTAGACCAGGCTGGTCCCTTAACTCAGAAATCCGCTGAG  50

seq1  TGAAATATTGCACTCTTCCACTATTGCTATCTCAGAACCTAAGTAACTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTGCACTCTTCCACTATTGCTATCTCAGAACCTAAGTAACTTT  100

seq1  TATGTCTTTAAATATTTGTTTTATGAACCTAAGAGACTAAAGATACTGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTTAAATATTTGTTTTATGAACCTAAGAGACTAAAGATACTGCA  150

seq1  CAAAAATTTATATTCTAATTGATCCTTGGATAATATGTAGTGAGCTGTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTTATATTCTAATTGATCCTTGGATAATATGTAGTGAGCTGTTT  200

seq1  TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTT  238
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTT  239

seq1: chr19_27218480_27219626
seq2: B6Ng01-112L19.g_68_1218 (reverse)

seq1  GCTCA-CCAT-GATCACTTTACCAATGGCCAGTAG-AAAAAGAAATCACT  47
      ||||| |||| ||||||| | ||||||| | |||| ||||||||||||| 
seq2  GCTCACCCATGGATCACTATTCCAATGGGCCGTAGAAAAAAGAAATCAC-  49

seq1  TCTTCCTGCAAATCA-GGCTACTCAGACTGC-TTCAAAATGTCAGGCTTT  95
      |||  |||||||||| |||||||||| |||| | |||| ||||| |||||
seq2  TCT--CTGCAAATCAGGGCTACTCAGGCTGCATCCAAATTGTCAAGCTTT  97

seq1  CTG-CTGGAAGATGCCTTTCCTGGGGGTAATAACAGCATTTTAGGGGAAA  144
      ||| ||| |||||||||||||||||||||||||||||||| ||  |||||
seq2  CTGTCTGAAAGATGCCTTTCCTGGGGGTAATAACAGCATTATA-AGGAAA  146

seq1  GTAAGGGAGTTGATAGTCAGGGCCGGGTAGGACTCACCCTACCAAGTGTG  194
      ||||||  ||||||||||||||||||||| ||||||||||||||||||||
seq2  GTAAGGAGGTTGATAGTCAGGGCCGGGTAAGACTCACCCTACCAAGTGTG  196

seq1  AGAGGAAGCAATGATCAGTTTGTACCATGATCATCTTACATA-TATTCGT  243
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  AGAGGAAGCAATGATCAGTTTGTACCATGATCATCTAACATATTATTCGT  246

seq1  TTTACCTCATT-ATTTTATTCTGTTTCATTTTTCCAGTGCTGGCATTGAA  292
      ||||||||||| ||||||||||| ||||||||||||||||||||| ||||
seq2  TTTACCTCATTAATTTTATTCTG-TTCATTTTTCCAGTGCTGGCA-TGAA  294

seq1  CTTCAACAGGGACTTAGACAGGCTAACAGGTGCTCTCCCAGTGAGCTACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACAGGGACTTAGACAGGCTAACAGGTGCTCTCCCAGTGAGCTACA  344

seq1  CGCCCCACCCTCAGTTTCCATAAAACGCAGAGCAGGAACTAACTTCAAAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCACCCTCAGTTTCCATAAAACGCAGAGCAGGAACTAACTTCAAAC  394

seq1  ACACTGAG-TTTTTGCTCATTCTCACCCACTC-AAAGCTGACTGTTACTC  440
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  ACACTGAGTTTTTTGCTCATTCTCACCCACTCAAAAGCTGACTGTTACTC  444

seq1  ACTTGAATTTTTACTATGCAGTAAAACAAACAAAACATCCCACAAGAGGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATTTTTACTATGCAGTAAAACAAACAAAACATCCCACAAGAGGT  494

seq1  CCTGCAGTGAGCACGGGTGTCCCCGGAGCTCTTTTGTAGTGAGAAAAGAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTGAGCACGGGTGTCCCCGGAGCTCTTTTGTAGTGAGAAAAGAA  544

seq1  GCTGCCTTTTACTGAAAGAGTAAAAATTCAGGTCACTAAACTATGACTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTTTACTGAAAGAGTAAAAATTCAGGTCACTAAACTATGACTTT  594

seq1  TCTATATGAAGAACAGGGCTTCTGAAAAGCCATAAATCACCAACATCTCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGAAGAACAGGGCTTCTGAAAAGCCATAAATCACCAACATCTCA  644

seq1  AGCAATTATACTTTCACACAAGAAAAAGAAAGACCCAAAAAATATATTTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTATACTTTCACACAAGAAAAAGAAAGACCCAAAAAATATATTTA  694

seq1  CTTAATTGTGTGTTTATCAATCACTTCTATTGTCTTCTCGGCACTGTGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGTGTGTTTATCAATCACTTCTATTGTCTTCTCGGCACTGTGCA  744

seq1  AAATGCCCAGAAACATCTCTCTCAGCATCCACCCTCAAAGCAAGGCACAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCAGAAACATCTCTCTCAGCATCCACCCTCAAAGCAAGGCACAT  794

seq1  GCTTATAATAAATATCTATCACCAAATCAGACATTTCCTCTGGAGCACGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAATAAATATCTATCACCAAATCAGACATTTCCTCTGGAGCACGT  844

seq1  ACAGGTATTTTTAACTCAAGGCAACAGTCGGACCTGTTAAACATTTCTCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATTTTTAACTCAAGGCAACAGTCGGACCTGTTAAACATTTCTCA  894

seq1  ACTCCTCTGAAGATGCCAATATAGCCAAGACAGAATATACACCATGCACA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCTGAAGATGCCAATATAGCCAAGACAGAATATACACCATGCACA  944

seq1  ATCTGCCCGACTTAAGACAGTGTGTGGCAAGAATCATCCACATGGAGAGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCGACTTAAGACAGTGTGTGGCAAGAATCATCCACATGGAGAGT  994

seq1  TAAACAATGAAGTTTTCTAAGCAGATGCCCGCTGTGAGAATCAATAACCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATGAAGTTTTCTAAGCAGATGCCCGCTGTGAGAATCAATAACCT  1044

seq1  CTTCGAAAACCAGCAAATTGGTTTCAAGTGTTTGGTTCACTGATTCCATC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAAAACCAGCAAATTGGTTTCAAGTGTTTGGTTCACTGATTCCATC  1094

seq1  CCACGGCTGCAAATAAGAGGCCACCCTCTGAGTGAAAGGGAAGGTGGAGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGCTGCAAATAAGAGGCCACCCTCTGAGTGAAAGGGAAGGTGGAGA  1144

seq1  TGAATTC  1147
      |||||||
seq2  TGAATTC  1151