BAC Information

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BAC

Clone NameB6Ng01-113F09
Chromosome19 (Build37)
Map Location 17,786,757 - 17,921,287
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113F09.bB6Ng01-113F09.g
ACCDH919158DH919159
length1541,064
definitionDH919158|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F09, 5' end.DH919159|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,786,757 - 17,786,916)(17,920,221 - 17,921,287)
sequence
cacattttctaagcactttcctaatatctagaagcagggatatatatata
tatatatatatatatatatatatatacacacacacacacacacacacaca
catgtatgtatgtgtgtgtgtgtgtgtgtgtgtctgtatgtgtatgactg
tgtg
gaattccagcagactcctccattgtttctcttaaacatggtttcatcatg
agaatcatcatgagaacgcaagatctgagtaattagcaacactcattcca
ctttcagtctagaaacttctgggcagtgtgaatttggatatccatctcag
gaggcatgtgggagggggaaagctgaggatttactggattctgaggtgaa
gagagatgagagtaataggtgagaagactgccttctggtgacagacgtgg
ggaggcaacaagggaactctctagatacttcttcccaactgacagaggga
ctttcccacagaagggctgatgagcacagagatgggacagaagtactttg
gttggggaggaggacgctcatcttggcagaattgttagtgaaactggagt
ctgggaatgactgcacactagacactgaaaacactagtcgacccgacatc
actcgctcactgtatagctggacaaacaatcccactagccactttccact
gcagtagagaaactggcagccatgagagcattaaaataatgaccatgtct
ctgttaattcgatgtgtcactgtgaggagcaaatgtgacagccactggaa
aggactttgaaaagtttatgtgaaagctgtcagagtgctctgtgggcatt
aaccatcaaagtcacacggtcattcttttatccagtcagggtgatttgct
ttcatccttaacacacaggttggtcaacttccccttttctttgatctaaa
tgttctggggaattttgctttgaatttggatgtaggaaagggcctgttcc
tgcatgaacactattttggcagagagtttatcataagcacacagagaacg
attacatgaaaaaactgcagcctagaaagcccagtggacgtgaaggggct
accagatatagaatattgattagatatttgccttggcgtcattagtttca
caacagaactgaaccacttctgaaagttacatctctcaaaaacgagatca
attttgcttaacccacagcttcccccaaaacactctttggtcgaaaaaat
ggttttctcagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17786757_17786916
seq2: B6Ng01-113F09.b_49_208

seq1  GAATTCCACATTTTCTAAGCACTTTCCTAATATCTAGAAGCAGGGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTTTCTAAGCACTTTCCTAATATCTAGAAGCAGGGATATA  50

seq1  TATATATATATATATATATATATATATATATACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATACACACACACACACACACA  100

seq1  CACACACATGTATGTATGTGTGTGTGTGTGTGTGTGTGTCTGTATGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGTATGTATGTGTGTGTGTGTGTGTGTGTGTCTGTATGTGTA  150

seq1  TGTCTGTGTG  160
      || |||||||
seq2  TGACTGTGTG  160

seq1: chr19_17920221_17921287
seq2: B6Ng01-113F09.g_70_1133 (reverse)

seq1  ATACTTGAGAAAACAATTTTTTCTGCCCAAGAGTGTTTTGGGGG-AGCTG  49
      |||| ||||||||| ||||||||  || |||||||||||||||| |||||
seq2  ATAC-TGAGAAAACCATTTTTTCGACCAAAGAGTGTTTTGGGGGAAGCTG  49

seq1  TGGGTTTAGC-AGATTGATTCTCGTTTTTTGAGAGATGTAACTTTCAGAA  98
      |||||| ||| | ||||| ||||| |||||||||||||||||||||||||
seq2  TGGGTTAAGCAAAATTGA-TCTCG-TTTTTGAGAGATGTAACTTTCAGAA  97

seq1  GTGGTTCAGTTCTGTGTGGAAACTAATGACGCCAAGGCAAATTATCTAAT  148
      |||||||||||||||   ||||||||||||||||||||||| ||||||||
seq2  GTGGTTCAGTTCTGTTGTGAAACTAATGACGCCAAGGCAAA-TATCTAAT  146

seq1  CAATATTCTATTATCTGGTAGCCCCTTCACGTCCACTGGGCTTTCTAGGC  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCTA-TATCTGGTAGCCCCTTCACGTCCACTGGGCTTTCTAGGC  195

seq1  TGCAGTTTTTCCTGTTATTCGTTCTCTGTGTGCTTAATGATAAACTCTCT  248
      |||||||||| |   || ||||||||||||||||| ||||||||||||||
seq2  TGCAGTTTTTTCATGTAATCGTTCTCTGTGTGCTT-ATGATAAACTCTCT  244

seq1  GCC-AAATAGTGTTCATGCAGGAACAGGCCCTTTCCTACATCCAAATTCA  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATAGTGTTCATGCAGGAACAGGCCCTTTCCTACATCCAAATTCA  294

seq1  AAGCAAAATTCCCCAGAAACATTTAGATCAAAGAAAAGGGGAAGTTGACC  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGCAAAATTCCCCAG-AACATTTAGATCAAAGAAAAGGGGAAGTTGACC  343

seq1  AACCTGTGTGTTAAGGATGAAAGCAAATCACCCTGACTGGAT-AAAGAAT  396
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACCTGTGTGTTAAGGATGAAAGCAAATCACCCTGACTGGATAAAAGAAT  393

seq1  GACCGTGTGACTTTGATGGTTAATGCCCACAGAGCACTCTGACAGCTTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTGTGACTTTGATGGTTAATGCCCACAGAGCACTCTGACAGCTTTC  443

seq1  ACATAAACTTTTCAAAGTCCTTTCCAGTGGCTGTCACATTTGCTCCTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTTTTCAAAGTCCTTTCCAGTGGCTGTCACATTTGCTCCTCAC  493

seq1  AGTGACACATCGAATTAACAGAGACATGGTCATTATTTTAATGCTCTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACATCGAATTAACAGAGACATGGTCATTATTTTAATGCTCTCAT  543

seq1  GGCTGCCAGTTTCTCTACTGCAGTGGAAAGTGGCTAGTGGGATTGTTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCAGTTTCTCTACTGCAGTGGAAAGTGGCTAGTGGGATTGTTTGT  593

seq1  CCAGCTATACAGTGAGCGAGTGATGTCGGGTCGACTAGTGTTTTCAGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATACAGTGAGCGAGTGATGTCGGGTCGACTAGTGTTTTCAGTGT  643

seq1  CTAGTGTGCAGTCATTCCCAGACTCCAGTTTCACTAACAATTCTGCCAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGCAGTCATTCCCAGACTCCAGTTTCACTAACAATTCTGCCAAG  693

seq1  ATGAGCGTCCTCCTCCCCAACCAAAGTACTTCTGTCCCATCTCTGTGCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCGTCCTCCTCCCCAACCAAAGTACTTCTGTCCCATCTCTGTGCTC  743

seq1  ATCAGCCCTTCTGTGGGAAAGTCCCTCTGTCAGTTGGGAAGAAGTATCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCCTTCTGTGGGAAAGTCCCTCTGTCAGTTGGGAAGAAGTATCTA  793

seq1  GAGAGTTCCCTTGTTGCCTCCCCACGTCTGTCACCAGAAGGCAGTCTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCCCTTGTTGCCTCCCCACGTCTGTCACCAGAAGGCAGTCTTCT  843

seq1  CACCTATTACTCTCATCTCTCTTCACCTCAGAATCCAGTAAATCCTCAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTACTCTCATCTCTCTTCACCTCAGAATCCAGTAAATCCTCAGC  893

seq1  TTTCCCCCTCCCACATGCCTCCTGAGATGGATATCCAAATTCACACTGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCTCCCACATGCCTCCTGAGATGGATATCCAAATTCACACTGCC  943

seq1  CAGAAGTTTCTAGACTGAAAGTGGAATGAGTGTTGCTAATTACTCAGATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTCTAGACTGAAAGTGGAATGAGTGTTGCTAATTACTCAGATC  993

seq1  TTGCGTTCTCATGATGATTCTCATGATGAAACCATGTTTAAGAGAAACAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTCTCATGATGATTCTCATGATGAAACCATGTTTAAGAGAAACAA  1043

seq1  TGGAGGAGTCTGCTGGAATTC  1067
      |||||||||||||||||||||
seq2  TGGAGGAGTCTGCTGGAATTC  1064