BAC Information

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BAC

Clone NameB6Ng01-113G10
Chromosome3 (Build37)19 (Build37)
Map Location 45,387,178 - 45,387,72252,161,120 - 52,162,109
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113G10.bB6Ng01-113G10.g
ACCDH919206DH919207
length1,004990
definitionDH919206|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G10, 5' end.DH919207|Mus musculus domesticus DNA, BAC clone: B6Ng01-113G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,387,178 - 45,387,722)(52,161,120 - 52,162,109)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccgccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggcggtct
ttttgtcttatatacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgtttattccagat
gaatttgcaaattgctccttctaatttcgttgaagaattgagttggaaat
tttaatggggattgcattgaatctgtagattgcttttggcaagatagcca
tttttacaatgttggtcctgccaatccatgagcatgggagtatctttcca
tcttctgagatcttctttaatttctttcttcagggacttgaagtttttat
catacagatctttcacttccttcgttagagtcacgccgagatattttata
ttatttgtggctattgagaagggtgttgtttccctaatttctttctcagc
ctgt
gaattccattttattttaagtgtgctccatgacatgaatgatccatttaa
cacctggttgtcagcttcattttattagttatttattaatttcacacaat
atattttgatcatattcacataagagttggaaaggaccaactattttcag
aaccagctccatttctctacacatagaactttgcatcatttaaaaaaatg
atgtcattagaagtcagtttaatgctgtttccttttagcagaataatagt
gtgcaaccacactccagtactatgaatttagccagtaggaatgaagcatc
tagatgaatattagcttgctttctttatttttctgtatgaggtgccttca
cctataggcccttactatgaagttttggaataaatatcattggctgtagc
ttgtaatatttgagtctgtgggatctcactggccaactccaaaagagtaa
ctcattcctggtgcttcttttttgtttgtgtttgtttgttttgtttggta
gcctctgctgcctagtagaggtatttttccttatgacagagtaactccat
tttaatacattttgcttgtgtgtgtacacacaataagttattgacctatg
tagaattttatatgtccctttcaaaaggtctttggaacacgctccccccc
attttctacctttatcgtgtccttatgccccatcatattttacctgcttc
tattccattgtccccctttcactcaatattcaatattatatccatagagt
caaatatgtagaaagctagattctgtcttctttttcactctcatttattt
gagtcaagcaaatccagtttcatataatctaattgtttaatctgtcttta
gggactataaatggtttttctctaggtttttaatcattgattttgctgtc
tctgtgctgtgtgtatttgttatgtggtagttttcatggacatcaaggta
cccatgcattgtgcatgcatgtgaggccaaagtatcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45387178_45387722
seq2: B6Ng01-113G10.b_505_1053 (reverse)

seq1  ACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACAA  50

seq1  ATAATATAAAATATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAAATATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTG  100

seq1  TATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAG  150

seq1  AAGATGGAAAGAT-CTCCCATGCTCATGGATTGGCAGGACCAACATTGTA  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAAAGATACTCCCATGCTCATGGATTGGCAGGACCAACATTGTA  200

seq1  AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCAT  250

seq1  TAAAA-TTCCAACTCAATTCTTCAACG-AACTAGAAGGAGCAATTTGCAA  297
      ||||| ||||||||||||||||||||| || |||||||||||||||||||
seq2  TAAAATTTCCAACTCAATTCTTCAACGAAATTAGAAGGAGCAATTTGCAA  300

seq1  ATTCATCTGGAAT-AACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAG  346
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGGAATAAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAG  350

seq1  GATAAAAGAACTTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTA  396
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTA  400

seq1  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAG  450

seq1  TGGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTAT  500

seq1  GGTCACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAG  545
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTGATCTTCGACAAGGGAGCCAAAACCATCCAGTGGAAGAAAG  549

seq1: chr19_52161120_52162109
seq2: B6Ng01-113G10.g_66_1055 (reverse)

seq1  AAATGATACCTTTGGCCTCTACATGCATGCAC-ATGCATGGGTACCTTGA  49
      |||||||| |||||||||| |||||||||||| |||||||||||||||||
seq2  AAATGATA-CTTTGGCCTC-ACATGCATGCACAATGCATGGGTACCTTGA  48

seq1  TGTCCATGTACACCTACCACATAAACAAATACACACAGCACAGAGACAAG  99
      |||||||| | | ||||||||| |||||||||||||||||||||||| ||
seq2  TGTCCATG-AAAACTACCACAT-AACAAATACACACAGCACAGAGAC-AG  95

seq1  CAAAATCAATGATTAAAAACCTAGAGAATAAACATTTAATAGTCCCTAAA  149
      |||||||||||||||||||||||||||| || ||||| ||||||||||||
seq2  CAAAATCAATGATTAAAAACCTAGAGAAAAACCATTT-ATAGTCCCTAAA  144

seq1  GACAGATT-AACAATTAGATTATATG-AACTGGATTTGCTTGACTCAAAT  197
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GACAGATTAAACAATTAGATTATATGAAACTGGATTTGCTTGACTCAAAT  194

seq1  AAATGAGAGTGAAAAAGAAGACAGAATCTAGCTTTCTACATATTTGACTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAGTGAAAAAGAAGACAGAATCTAGCTTTCTACATATTTGACTC  244

seq1  TATGGATATAATATTGAATATTGAGTGAAAGGGGGACAATGGAATAGAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATATAATATTGAATATTGAGTGAAAGGGGGACAATGGAATAGAAG  294

seq1  CAGGT-AAATATGATGGGGCATAAGGACACGATAAAGGTAG-AAATGGGG  345
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGGTAAAATATGATGGGGCATAAGGACACGATAAAGGTAGAAAATGGGG  344

seq1  GGGAGCGTGTTCCAAAGACCTTTTGAAAGGGACATAT-AAATTCTACATA  394
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGAGCGTGTTCCAAAGACCTTTTGAAAGGGACATATAAAATTCTACATA  394

seq1  GGTCAATAACTTATTGTGTGTACACACACAAGCAAAATGTATTAAAATGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATAACTTATTGTGTGTACACACACAAGCAAAATGTATTAAAATGG  444

seq1  AGTTACTCTGTCATAAGGAAAAATACCTCTACTAGGCAGCAGAGGCTACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTGTCATAAGGAAAAATACCTCTACTAGGCAGCAGAGGCTACC  494

seq1  AAACAAAACAAACAAACACAAACAAAAAAGAAGCACCAGGAATGAGTTAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAACAAACACAAACAAAAAAGAAGCACCAGGAATGAGTTAC  544

seq1  TCTTTTGGAGTTGGCCAGTGAGATCCCACAGACTCAAATATTACAAGCTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGAGTTGGCCAGTGAGATCCCACAGACTCAAATATTACAAGCTA  594

seq1  CAGCCAATGATATTTATTCCAAAACTTCATAGTAAGGGCCTATAGGTGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATGATATTTATTCCAAAACTTCATAGTAAGGGCCTATAGGTGAA  644

seq1  GGCACCTCATACAGAAAAATAAAGAAAGCAAGCTAATATTCATCTAGATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTCATACAGAAAAATAAAGAAAGCAAGCTAATATTCATCTAGATG  694

seq1  CTTCATTCCTACTGGCTAAATTCATAGTACTGGAGTGTGGTTGCACACTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTCCTACTGGCTAAATTCATAGTACTGGAGTGTGGTTGCACACTA  744

seq1  TTATTCTGCTAAAAGGAAACAGCATTAAACTGACTTCTAATGACATCATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGCTAAAAGGAAACAGCATTAAACTGACTTCTAATGACATCATT  794

seq1  TTTTTAAATGATGCAAAGTTCTATGTGTAGAGAAATGGAGCTGGTTCTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATGATGCAAAGTTCTATGTGTAGAGAAATGGAGCTGGTTCTGA  844

seq1  AAATAGTTGGTCCTTTCCAACTCTTATGTGAATATGATCAAAATATATTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGGTCCTTTCCAACTCTTATGTGAATATGATCAAAATATATTG  894

seq1  TGTGAAATTAATAAATAACTAATAAAATGAAGCTGACAACCAGGTGTTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTAATAAATAACTAATAAAATGAAGCTGACAACCAGGTGTTAA  944

seq1  ATGGATCATTCATGTCATGGAGCACACTTAAAATAAAATGGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCATTCATGTCATGGAGCACACTTAAAATAAAATGGAATTC  990