BAC Information

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BAC

Clone NameB6Ng01-113I07
Chromosome19 (Build37)
Map Location 6,345,221 - 6,526,816
singlet/doubletdoublet
Overlap geneMap4k2, Sf1, Pygm, Rasgrp2, Nrxn2
Upstream geneCst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1
Downstream geneSlc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113I07.bB6Ng01-113I07.g
ACCDH919292DH919293
length1,177736
definitionDH919292|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I07, 5' end.DH919293|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,525,633 - 6,526,816)(6,345,221 - 6,345,954)
sequence
gaattccattccaccagccgttcccagacggctcttcatctcaactcttc
cctgtctagggtgtgcacacaaagcaagctgggccctttcaaccttcaag
gaaccttgatcagaaacatatccacgaagctctgtgcagtggttcatacc
tgtccaatccattcctcaggaggctgaggcaggggcatcaccatgaattc
atgagtttgacgtcagcttgggctacagtgtctgaccctgtctaaaacaa
aaagtctacctatgaaccctaacttctatccagtcagaacatgtctaccc
catagcagagtctgaaactgagtttctgggtgacccaagcaagctaagcc
tcctgatggcatagagcccgtgcaccagtgccgagggccctacccaagct
gggagggtaagaacgttagcatttcagtggattagggggaaaggcagctc
ttatacctgaaaacagccctgtaggtcatgacttaccaagccacatgcct
acagtattgataagaacagcccaactcgggcccaggatgcactgctaagc
aaacagaaccctggctagattccatccctactcacctgttggagcagaga
agtatgccactgtgggctgtagcctgaaggatgtatccctccgcacctgt
aacaccagcttggcaagggcggaggcgagagtggttgcatggtcagagac
agtgagctactcaataggagggacgtgcgcacatgtgtacgagcaggcac
actcagatgcagaccccctaggaaagtttgtgtttctatatccgtgagca
taaattcctaagcacagcggccttcatggatctgagatgcctgtgtgtat
gtcagtgagtgtgaacagatgtgtccatgtgaatgtgtctctcacacctg
ctgcccatgaatctgaggcatgtactacaaaggacatgctgtgtggatgt
gtccttcagattatgcaagtaaaaataccctggctctggagcttaagcca
tattattattttggttttttcagacagaggtttcccgtttagcctggcct
gtcctggacctccttttgagacaggctgaacctcaacccagaaattcgcc
tgccctgcctccaatgtctggggattaagtggtggcgccacccaccccgc
catataccgtattaccctataaataaa
gaattccaggtccttcctaactctccctgtccatctcctgaaacccctct
cttttgtgtctcacctctcttcggtatctctgcctcggtctcctccagtg
ggaggaggagtggacgctcctgggaaaagaggaactgagtgggtgagtga
gcgaggttggggaagcggaggggcaggctgggtcttatggaagactgacc
actgaccccttcctctggcccaggagcctgctgcagtcagtccaggaggc
cctggaggaaaggtgagggacccacacttggggtgaagaggggcctccag
gcctgggggacagtcccctctcacaccccatcatgccatgtgctgtgtcc
ctgtaggagcctgactatccggccagccttagaactccaggtgtggattg
gaagagggtagagctgggaagtcacccgtgagcctagagtgctgtggggc
agaagtgcatcatgggacacctgctgatgaccaggctgctcctgatcctc
ttgacaggagctggactccccggatgatgccatcggaaccatcaaacggg
ctccatttttggggctgccccacactgagtcaacatctggtgacaatgcc
cagtcctgctccccaggtgaggcccagggctggcaggccacagggaattc
tggggtatggctagggcttggagtcactatggtctgtgcatacaggtacc
ctgtcagcacctccagctggccctggcagtccccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6525633_6526816
seq2: B6Ng01-113I07.b_45_1221 (reverse)

seq1  TTTATTTTATAGGGTAATATACGGCTTATGGGCTGGGTGGTGGTGGCGCA  50
      |||| |||||||||||  ||||||  ||| ||| |||||  |||||||| 
seq2  TTTA-TTTATAGGGTA--ATACGGTATAT-GGCGGGGTG--GGTGGCGC-  43

seq1  CACC-TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGT  99
      ||||  ||||||||   || | |||||||| |||||||| ||||||| | 
seq2  CACCACTTAATCCCCAGACATTGGAGGCAG-GGCAGGCGAATTTCTG-GG  91

seq1  TTGAGG-TCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC  148
      |||||| ||||||| |||| ||||  ||| |||||||||| |  ||||| 
seq2  TTGAGGTTCAGCCT-GTCT-CAAAAGGAGGTCCAGGACAGGCCAGGCTAA  139

seq1  ACAGGGAAACC-CTGTCTCGAAAAACC-AAATATATATATGGCTTAAGCT  196
      || |||||||| ||||||  ||||||| |||||   ||||||||||||||
seq2  AC-GGGAAACCTCTGTCTGAAAAAACCAAAATAATAATATGGCTTAAGCT  188

seq1  -CAGAGCCAGGGTATTTTTACTTGCATATTCTGAAGGACACATCCACACA  245
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAGAGCCAGGGTATTTTTACTTGCATAATCTGAAGGACACATCCACACA  238

seq1  GCATGTCCTTTGTAGTACATGCCTCAGATTCATGGGCAGCAGGTGTGAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCCTTTGTAGTACATGCCTCAGATTCATGGGCAGCAGGTGTGAGA  288

seq1  GACACATTCACATGGACACATCTGTTCACACTCACTGACATACACACAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTCACATGGACACATCTGTTCACACTCACTGACATACACACAGG  338

seq1  CATCTCAGATCCATGAAGGCCGCTGTGCTTAGGAATTTATGCTCACGGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGATCCATGAAGGCCGCTGTGCTTAGGAATTTATGCTCACGGAT  388

seq1  ATAGAAACACAAACTTTCCTAGGGGGTCTGCATCTGAGTGTGCCTGCTCG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACACAAACTTTCCTAGGGGGTCTGCATCTGAGTGTGCCTGCTCG  438

seq1  TACACATGTGCGCACGTCCCTCCTATTGAGTAGCTCACTGTCTCTGACCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTGCGCACGTCCCTCCTATTGAGTAGCTCACTGTCTCTGACCA  488

seq1  TGCAACCACTCTCGCCTCCGCCCTTGCCAAGCTGGTGTTACAGGTGCGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCACTCTCGCCTCCGCCCTTGCCAAGCTGGTGTTACAGGTGCGGA  538

seq1  GGGATACATCCTTCAGGCTACAGCCCACAGTGGCATACTTCTCTGCTCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACATCCTTCAGGCTACAGCCCACAGTGGCATACTTCTCTGCTCCA  588

seq1  ACAGGTGAGTAGGGATGGAATCTAGCCAGGGTTCTGTTTGCTTAGCAGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAGTAGGGATGGAATCTAGCCAGGGTTCTGTTTGCTTAGCAGTG  638

seq1  CATCCTGGGCCCGAGTTGGGCTGTTCTTATCAATACTGTAGGCATGTGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGGCCCGAGTTGGGCTGTTCTTATCAATACTGTAGGCATGTGGC  688

seq1  TTGGTAAGTCATGACCTACAGGGCTGTTTTCAGGTATAAGAGCTGCCTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGTCATGACCTACAGGGCTGTTTTCAGGTATAAGAGCTGCCTTT  738

seq1  CCCCCTAATCCACTGAAATGCTAACGTTCTTACCCTCCCAGCTTGGGTAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAATCCACTGAAATGCTAACGTTCTTACCCTCCCAGCTTGGGTAG  788

seq1  GGCCCTCGGCACTGGTGCACGGGCTCTATGCCATCAGGAGGCTTAGCTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCGGCACTGGTGCACGGGCTCTATGCCATCAGGAGGCTTAGCTTG  838

seq1  CTTGGGTCACCCAGAAACTCAGTTTCAGACTCTGCTATGGGGTAGACATG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCACCCAGAAACTCAGTTTCAGACTCTGCTATGGGGTAGACATG  888

seq1  TTCTGACTGGATAGAAGTTAGGGTTCATAGGTAGACTTTTTGTTTTAGAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGATAGAAGTTAGGGTTCATAGGTAGACTTTTTGTTTTAGAC  938

seq1  AGGGTCAGACACTGTAGCCCAAGCTGACGTCAAACTCATGAATTCATGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAGACACTGTAGCCCAAGCTGACGTCAAACTCATGAATTCATGGT  988

seq1  GATGCCCCTGCCTCAGCCTCCTGAGGAATGGATTGGACAGGTATGAACCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCCTGCCTCAGCCTCCTGAGGAATGGATTGGACAGGTATGAACCA  1038

seq1  CTGCACAGAGCTTCGTGGATATGTTTCTGATCAAGGTTCCTTGAAGGTTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAGCTTCGTGGATATGTTTCTGATCAAGGTTCCTTGAAGGTTG  1088

seq1  AAAGGGCCCAGCTTGCTTTGTGTGCACACCCTAGACAGGGAAGAGTTGAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCCAGCTTGCTTTGTGTGCACACCCTAGACAGGGAAGAGTTGAG  1138

seq1  ATGAAGAGCCGTCTGGGAACGGCTGGTGGAATGGAATTC  1184
      |||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGCCGTCTGGGAACGGCTGGTGGAATGGAATTC  1177

seq1: chr19_6345221_6345954
seq2: B6Ng01-113I07.g_71_805

seq1  GAATTCCAGGTCCTTCCTAACTCTCCCTGTCCATCTCCTGAAACCCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCCTTCCTAACTCTCCCTGTCCATCTCCTGAAACCCCTCT  50

seq1  CTTTTGTGTCTCACCTCTCTTCGGTATCTCTGCCTCGGTCTCCTCCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTCTCACCTCTCTTCGGTATCTCTGCCTCGGTCTCCTCCAGTG  100

seq1  GGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGTGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGTGAGTGA  150

seq1  GCGAGGTTGGGGAAGCGGAGGGGCAGGCTGGGTCTTATGGAAGACTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTTGGGGAAGCGGAGGGGCAGGCTGGGTCTTATGGAAGACTGACC  200

seq1  ACTGACCCCTTCCTCTGGCCCAGGAGCCTGCTGCAGTCAGTCCAGGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCCTTCCTCTGGCCCAGGAGCCTGCTGCAGTCAGTCCAGGAGGC  250

seq1  CCTGGAGGAAAGGTGAGGGACCCACACTTGGGGTGAAGAGGGGCCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGAAAGGTGAGGGACCCACACTTGGGGTGAAGAGGGGCCTCCAG  300

seq1  GCCTGGGGGACAGTCCCCTCTCACACCCCATCATGCCATGTGCTGTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGGACAGTCCCCTCTCACACCCCATCATGCCATGTGCTGTGTCC  350

seq1  CTGTAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGTGTGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGTGTGGATTG  400

seq1  GAAGAGGGTAGAGCTGGGAAGTCACCCGTGAGCCTAGAGTGCTGTGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGTAGAGCTGGGAAGTCACCCGTGAGCCTAGAGTGCTGTGGGGC  450

seq1  AGAAGTGCATCATGGGACACCTGCTGATGACCAGGCTGCTCCTGATCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCATCATGGGACACCTGCTGATGACCAGGCTGCTCCTGATCCTC  500

seq1  TTGACAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGG  550

seq1  CTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCC  600

seq1  CAGTCCTGCTCCCCAGGTGAGGCCCAGGGCTGGCAGGCCACAGGGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGCTCCCCAGGTGAGGCCCAGGGCTGGCAGGCCACAGGGAATTC  650

seq1  TGGGGTAGGGCTAGGGCTTGGAGTCACTATGGTCTGTGCATACAGGTACC  700
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTATGGCTAGGGCTTGGAGTCACTATGGTCTGTGCATACAGGTACC  700

seq1  CTGTCAGCACCTCCAGCTGGCCCTGGCAG-CCCCG  734
      ||||||||||||||||||||||||||||| |||||
seq2  CTGTCAGCACCTCCAGCTGGCCCTGGCAGTCCCCG  735