BAC Information

Click to search

BAC

Clone NameB6Ng01-113I24
Chromosome19 (Build37)
Map Location 34,823,627 - 34,962,587
singlet/doubletdoublet
Overlap geneLOC676714, Pank1
Upstream geneEG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12
Downstream geneMphosph1, LOC383464, LOC100042292, A830019P07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113I24.bB6Ng01-113I24.g
ACCDH919326DH919327
length1,021376
definitionDH919326|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I24, 5' end.DH919327|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,823,627 - 34,824,642)(34,962,206 - 34,962,587)
sequence
gaattcattagcattaatcataagctcataaatgcagggtcagcagtgag
ccctgagccctcggctatggaggtctttaggtcaaaggcttgggaactct
gtctttgagaaaaatcattctgccagttaaatactgttcttaggggcaaa
tcggtcttgtcttctatttcaataatataggacaaccagttcttttgaga
agttctggggaataagatgaatcttcagacttccctcaaagtcaccactc
acagggctgctgggaaagcccagagctataagagcaatgtctctgttgtt
ttatccttgacagtattcagattttgtttgtctctgaatgctccctagca
ggcttttttaacctttgggacttaggaattggtgatgtgtacatgccaat
aatcgccacactttggaagctacggcatagggatggcgaatttgagtgca
gtctgggctatataagaagaactttgactttaaaaaagacaaaacaagat
aacatcagggaaaattaggttaattcctgggacgtgcaaggtgaaaggaa
agaatagtttactgtttcaggttattctccgacctccacaaagtacacat
gaaatagaaatatgtagaaatacacgaaatacacgaaaataataggccag
gttctgatgtagctcactttggttggatgcgattttaccatacacaaagt
cctgggttcaatccaagcaccaaataagtcaggtgtgatggtgccgcatg
ctcacattccttgtgtgtgtgagacagaagcaggaaactcagacattaaa
ggacatcgtcagcctacccagtggatgctagcctggactacacagtggga
tgctagcctggactacacagtggatgatgctagcctggactacacagaac
cttagctcaaacaaacaaacaaacaaacaactggagtcttaagagtgtca
ccgatttattaggctgttctcaaatcaagtttatttagcaaaaaaatcta
cagcattgttactgtgcagga
ccatacatcttggtcattagaatgctgagggctgtgttgaatatgaaaaa
aagaaaaagaaatcctggtagttttagttgtagctgatacacttcactat
gtgtatgtatttgcctagaaaataaggcagggaagaaaaatccaaaagtc
tagaagcgcttaccatataacaacctccttcatttctattattcctgagg
acaagcatacacaccctcttcaccagcatctgcagtgttgtagtttaaag
gaaaatgacctcataggctcctgtgtttgactgttgtgtctatttgggaa
gacctgggaggtgtggccttgttggaggaggtgtggccttgttggaggag
gtgtggccttgttggaggaggtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34823627_34824642
seq2: B6Ng01-113I24.b_48_1068

seq1  GAATTCATTAGCATTAATCATAAGCTCATAAATGCAGGGTCAGCAGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGCATTAATCATAAGCTCATAAATGCAGGGTCAGCAGTGAG  50

seq1  CCCTGAGCCCTCGGCTATGGAGGTCTTTAGGTCAAAGGCTTGGGAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCCCTCGGCTATGGAGGTCTTTAGGTCAAAGGCTTGGGAACTCT  100

seq1  GTCTTTGAGAAAAATCATTCTGCCAGTTAAATACTGTTCTTAGGGGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAGAAAAATCATTCTGCCAGTTAAATACTGTTCTTAGGGGCAAA  150

seq1  TCGGTCTTGTCTTCTATTTCAATAATATAGGACAACCAGTTCTTTTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCTTGTCTTCTATTTCAATAATATAGGACAACCAGTTCTTTTGAGA  200

seq1  AGTTCTGGGGAATAAGATGAATCTTCAGACTTCCCTCAAAGTCACCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGGGAATAAGATGAATCTTCAGACTTCCCTCAAAGTCACCACTC  250

seq1  ACAGGGCTGCTGGGAAAGCCCAGAGCTATAAGAGCAATGTCTCTGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTGCTGGGAAAGCCCAGAGCTATAAGAGCAATGTCTCTGTTGTT  300

seq1  TTATCCTTGACAGTATTCAGATTTTGTTTGTCTCTGAATGCTCCCTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTGACAGTATTCAGATTTTGTTTGTCTCTGAATGCTCCCTAGCA  350

seq1  GGCTTTTTTAACCTTTGGGACTTAGGAATTGGTGATGTGTACATGCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTAACCTTTGGGACTTAGGAATTGGTGATGTGTACATGCCAAT  400

seq1  AATCGCCACACTTTGGAAGCTACGGCATAGGGATGGCGAATTTGAGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCCACACTTTGGAAGCTACGGCATAGGGATGGCGAATTTGAGTGCA  450

seq1  GTCTGGGCTATATAAGAAGAACTTTGACTTTAAAAAAGACAAAACAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGCTATATAAGAAGAACTTTGACTTTAAAAAAGACAAAACAAGAT  500

seq1  AACATCAGGGAAAATTAGGTTAATTCCTGGGACGTGCAAGGTGAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGGGAAAATTAGGTTAATTCCTGGGACGTGCAAGGTGAAAGGAA  550

seq1  AGAATAGTTTACTGTTTCAGGTTATTCTCCGACCTCCACAAAGTACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTTTACTGTTTCAGGTTATTCTCCGACCTCCACAAAGTACACAT  600

seq1  GAAATAGAAATATGTAGAAATACACGAAATACACGAAAATAATAGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAATATGTAGAAATACACGAAATACACGAAAATAATAGGCCAG  650

seq1  GTTCTGATGTAGCTCAC-TTGGTTGGATGCGA-TTTACCATACACAAAGT  698
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  GTTCTGATGTAGCTCACTTTGGTTGGATGCGATTTTACCATACACAAAGT  700

seq1  CCTGGGTTCAATCCAAGCACCAAATAAGTCAGGTGTGATGGTGCCGCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTCAATCCAAGCACCAAATAAGTCAGGTGTGATGGTGCCGCATG  750

seq1  CTCACATTCCTTGTGTGTGTGAGACAGAAGCAGGAAACTCAGACATTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTCCTTGTGTGTGTGAGACAGAAGCAGGAAACTCAGACATTAAA  800

seq1  GGACATCGTCAGCCTA-CCAGTGGATGCTAGCCTGGACTACACAGT-GGA  846
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  GGACATCGTCAGCCTACCCAGTGGATGCTAGCCTGGACTACACAGTGGGA  850

seq1  TGCTAGCCTGGACTACACAGTGGATGATGCTAGCCTGGACTACACAGAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCCTGGACTACACAGTGGATGATGCTAGCCTGGACTACACAGAAC  900

seq1  CTTAGCTCAAACAAACAAACAAACAAACAAACTGGAGTCTTAAGAGTGTC  946
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTAGCTCAAACAAACAAACAAACAAAC-AACTGGAGTCTTAAGAGTGTC  949

seq1  ACCGATTTAATAGGCTGTTCTCAAATCAAG-TTATTTAGCAGAAAAATCT  995
      ||||||||| |||||||||||||||||||| |||||||||| ||||||||
seq2  ACCGATTTATTAGGCTGTTCTCAAATCAAGTTTATTTAGCAAAAAAATCT  999

seq1  ACAGCATTG-TACTGTGCAGGA  1016
      ||||||||| ||||||||||||
seq2  ACAGCATTGTTACTGTGCAGGA  1021

seq1: chr19_34962206_34962587
seq2: B6Ng01-113I24.g_69_450 (reverse)

seq1  CCACACCTCCTCCAACAAGGCCACACCTCCTCCAACAAGGCCACACCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTCCTCCAACAAGGCCACACCTCCTCCAACAAGGCCACACCTCC  50

seq1  TCCAACAAGGCCACACCTCCCAGGTCTTCCCAAATAGACACAACAGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAGGCCACACCTCCCAGGTCTTCCCAAATAGACACAACAGTCAA  100

seq1  ACACAGGAGCCTATGAGGTCATTTTCCTTTAAACTACAACACTGCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAGCCTATGAGGTCATTTTCCTTTAAACTACAACACTGCAGATG  150

seq1  CTGGTGAAGAGGGTGTGTATGCTTGTCCTCAGGAATAATAGAAATGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAGAGGGTGTGTATGCTTGTCCTCAGGAATAATAGAAATGAAGG  200

seq1  AGGTTGTTATATGGTAAGCGCTTCTAGACTTTTGGATTTTTCTTCCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTATATGGTAAGCGCTTCTAGACTTTTGGATTTTTCTTCCCTGC  250

seq1  CTTATTTTCTAGGCAAATACATACACATAGTGAAGTGTATCAGCTACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCTAGGCAAATACATACACATAGTGAAGTGTATCAGCTACAAC  300

seq1  TAAAACTACCAGGATTTCTTTTTCTTTTTTTCATATTCAACACAGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTACCAGGATTTCTTTTTCTTTTTTTCATATTCAACACAGCCCTC  350

seq1  AGCATTCTAATGACCAAGATGTATGGGAATTC  382
      ||||||||||||||||||||||||||||||||
seq2  AGCATTCTAATGACCAAGATGTATGGGAATTC  382