BAC Information

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BAC

Clone NameB6Ng01-113N13
Chromosome19 (Build37)
Map Location 21,701,625 - 21,869,642
singlet/doubletdoublet
Overlap gene1110059E24Rik, 5730446C15Rik, Tmem2
Upstream geneAldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633
Downstream geneEG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113N13.bB6Ng01-113N13.g
ACCDH919532DH919533
length1,047613
definitionDH919532|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N13, 5' end.DH919533|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,868,602 - 21,869,642)(21,701,625 - 21,702,237)
sequence
gaattccagtctgtggagacacaaagtccactgtaatggttatgtgtatt
ctcttaattgcttgaaatcaattcctagagagcatacttcattagaacca
tcatccccaaatataaatataatttttttattggaaggaattccaataaa
atatacttatatgagaaactgtatgatgagcagaaaatgtatgatgttga
tttaaaaaaaaatcaactcagccaaccccatcttccaggctagcccaatt
gtggagtaagcacatttataacagcaaaaaccacatgaggctgaccataa
aacctttcagcacgcgagaggcttccagcaatcatttgcccttgtatggc
caacaagtgaaactgaagaacaccaactcaaggaaccacctctgcagccc
agtggttcagatggactaagaaaattccaaggaaagccgcagacttcagt
tctggtttcccattagcctggcttccctctcctgaagattatttggaaaa
tgtgaatcagaacttggttattatgtttggaactgggagtagaaattcag
ccctccatgtaagggaaatcaaataaattcatggtgtggccaactggctc
agtcaacaaagaagtgggaaggctcatctctctttctcctgtgtatactc
ttagaaatgtcagtaactacttcctccgggactttaaaatttacaaaatc
cttaaaagtaccctgaaaaccaaaataaaatagtactttgaaagttttat
aaaaggccaaaggggcctcaattgcttcactgttatatccagttacggag
gtgtctactcagaaatctgtcatagacttttgtgaaataaagacaaagac
aaagaggtgctcaactctcttgtaataatggaccagacggtcctctactt
catagccccagggactgtgagttttagattgttccattaggcacttctat
gaagccactgttggctgaaaacttattgaatctgacaggcaccaagtttt
ctccaaaaataaacgcgccgcgcacacacacaccacactcacacacc
gaattctgtcgataatttgatcagttcttgtatagttactgggggtgggg
agggggcctatccctaatgtatatttctctttgctggactgttagttccc
acctctgctcctcaatacttgctgtttgaatttcacccggttatttctgc
tctagcagtctgtcctgggcgtgcatttcactcaggcatgtgttcctggt
ccatctcgtctaatggagaccttctcttctatcttcttcctcctcctttc
tcctcccttgccttcttcctcagggtcgttcctgtaacccacagcctggt
aactgaagctccgcgtcttctattctctccagtaactgactgtagccatt
ttatttaaccaatagttttaaattagggagcaaagttggtgcagtgagga
tcggttcctgggggcagctagatcccagaggctagtagtcagcatttgaa
tacatagcagcaccaggccaaaccctcagcacaacagctaaaggccttga
aataaattttatattcctcgaaatactacattaaaaagtcttacaaagaa
cttatttaaatctataattttaaatgtttataaatacaaaatggtttagt
catacttcactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21868602_21869642
seq2: B6Ng01-113N13.b_50_1095 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGCGC-GCGCGTTTA-TTTTGGAG-AA  47
      ||||||| ||||| |||||||||||||| ||||||||| |||||||| ||
seq2  GTGTGTGAGTGTG-GTGTGTGTGTGCGCGGCGCGTTTATTTTTGGAGAAA  49

seq1  ACTTGTTGCCTGTCAGATTCAATATGTTTTCAGCCAACAGTGGCTTCATA  97
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTTGGTGCCTGTCAGATTCAATAAGTTTTCAGCCAACAGTGGCTTCATA  99

seq1  GAAGTGCCT-ATGGAACATTCTAAAACTCACAGTCCCTGGGGCTATGAGG  146
      ||||||||| |||||||| ||||||||||||||||||||||||||||| |
seq2  GAAGTGCCTAATGGAACAATCTAAAACTCACAGTCCCTGGGGCTATGAAG  149

seq1  TAGAGGACCGTCTGGTCCATTATTACAAGAGAGTTGAGCACCTCTTTGTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGACCGTCTGGTCCATTATTACAAGAGAGTTGAGCACCTCTTTGTC  199

seq1  TTTGTCTTTTTTTCAC-AAAGTCTATGACAGATTTCTGAGTAGACACCTC  245
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTATTTCACAAAAGTCTATGACAGATTTCTGAGTAGACACCTC  249

seq1  CGTAACTGGATATAACAGTGAAGCAATTGAGGCCCCTTTGGCCTTTTATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTGGATATAACAGTGAAGCAATTGAGGCCCCTTTGGCCTTTTATA  299

seq1  AAACTTTC-AAGTACTATTTTATTTTGGTTTTCAGGGTACTTTTAAGGAT  344
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCAAAGTACTATTTTATTTTGGTTTTCAGGGTACTTTTAAGGAT  349

seq1  TTTGTAAATTTTAAAGTCCCGGAGGAAGTAGTTACTGACATTTCTAAGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATTTTAAAGTCCCGGAGGAAGTAGTTACTGACATTTCTAAGAG  399

seq1  TATACACAGGAGAAAGAGAGATGAGCCTTCCCACTTCTTTGTTGACTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAGGAGAAAGAGAGATGAGCCTTCCCACTTCTTTGTTGACTGAG  449

seq1  CCAGTTGGCCACACCATGAATTTATTTGATTTCCCTTACATGGAGGGCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGCCACACCATGAATTTATTTGATTTCCCTTACATGGAGGGCTG  499

seq1  AATTTCTACTCCCAGTTCCAAACATAATAACCAAGTTCTGATTCACATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTACTCCCAGTTCCAAACATAATAACCAAGTTCTGATTCACATTT  549

seq1  TCCAAATAATCTTCAGGAGAGGGAAGCCAGGCTAATGGGAAACCAGAACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAATCTTCAGGAGAGGGAAGCCAGGCTAATGGGAAACCAGAACT  599

seq1  GAAGTCTGCGGCTTTCCTTGGAATTTTCTTAGTCCATCTGAACCACTGGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGCGGCTTTCCTTGGAATTTTCTTAGTCCATCTGAACCACTGGG  649

seq1  CTGCAGAGGTGGTTCCTTGAGTTGGTGTTCTTCAGTTTCACTTGTTGGCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGTGGTTCCTTGAGTTGGTGTTCTTCAGTTTCACTTGTTGGCC  699

seq1  ATACAAGGGCAAATGATTGCTGGAAGCCTCTCGCGTGCTGAAAGGTTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGGCAAATGATTGCTGGAAGCCTCTCGCGTGCTGAAAGGTTTTA  749

seq1  TGGTCAGCCTCATGTGGTTTTTGCTGTTATAAATGTGCTTACTCCACAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCCTCATGTGGTTTTTGCTGTTATAAATGTGCTTACTCCACAAT  799

seq1  TGGGCTAGCCTGGAAGATGGGGTTGGCTGAGTTGATTTTTTTTTAAATCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAGCCTGGAAGATGGGGTTGGCTGAGTTGATTTTTTTTTAAATCA  849

seq1  ACATCATACATTTTCTGCTCATCATACAGTTTCTCATATAAGTATATTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATACATTTTCTGCTCATCATACAGTTTCTCATATAAGTATATTTT  899

seq1  ATTGGAATTCCTTCCAATAAAAAAATTATATTTATATTTGGGGATGATGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATTCCTTCCAATAAAAAAATTATATTTATATTTGGGGATGATGG  949

seq1  TTCTAATGAAGTATGCTCTCTAGGAATTGATTTCAAGCAATTAAGAGAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGAAGTATGCTCTCTAGGAATTGATTTCAAGCAATTAAGAGAAT  999

seq1  ACACATAACCATTACAGTGGACTTTGTGTCTCCACAGACTGGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAACCATTACAGTGGACTTTGTGTCTCCACAGACTGGAATTC  1046

seq1: chr19_21701625_21702237
seq2: B6Ng01-113N13.g_70_682

seq1  GAATTCTGTCGATTATTTGATCAGTTCTTGTATAGTTACTGGGGGTGGGG  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCGATAATTTGATCAGTTCTTGTATAGTTACTGGGGGTGGGG  50

seq1  AGGGGGCCTATCCCTAATGTATATTTCTCTTTGCTGGACTGTTAGTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCCTATCCCTAATGTATATTTCTCTTTGCTGGACTGTTAGTTCCC  100

seq1  ACCTCTGCTCCTCAATACTTGCTGTTTGAATTTCACCCGGTTATTTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCTCCTCAATACTTGCTGTTTGAATTTCACCCGGTTATTTCTGC  150

seq1  TCTAGCAGTCTGTCCTGGGCGTGCATTTCACTCAGGCATGTGTTCCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGTCTGTCCTGGGCGTGCATTTCACTCAGGCATGTGTTCCTGGT  200

seq1  CCATCTCGTCTAATGGAGACCTTCTCTTCTATCTTCTTCCTCCTCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCGTCTAATGGAGACCTTCTCTTCTATCTTCTTCCTCCTCCTTTC  250

seq1  TCCTCCCTTGCCTTCTTCCTCAGGGTCGTTCCTGTAACCCACAGCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTGCCTTCTTCCTCAGGGTCGTTCCTGTAACCCACAGCCTGGT  300

seq1  AACTGAAGCTCCGCGTCTTCTATTCTCTCCAGTAACTGACTGTAGCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCTCCGCGTCTTCTATTCTCTCCAGTAACTGACTGTAGCCATT  350

seq1  TTATTTAACCAATAGTTTTAAATTAGGGAGCAAAGTTGGTGCAGTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAACCAATAGTTTTAAATTAGGGAGCAAAGTTGGTGCAGTGAGGA  400

seq1  TCGGTTCCTGGGGGCAGCTAGATCCCAGAGGCTAGTAGTCAGCATTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTCCTGGGGGCAGCTAGATCCCAGAGGCTAGTAGTCAGCATTTGAA  450

seq1  TACATAGCAGCACCAGGCCAAACCCTCAGCACAACAGCTAAAGGCCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCAGCACCAGGCCAAACCCTCAGCACAACAGCTAAAGGCCTTGA  500

seq1  AATAAATTTTATATTCCTCGAAATACTACATTAAAAAGTCTTACAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTTTATATTCCTCGAAATACTACATTAAAAAGTCTTACAAAGAA  550

seq1  CATATTTAAATCTATAATTTTAAATGTTTATAAATACAAAATGGTTTAGT  600
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAAATCTATAATTTTAAATGTTTATAAATACAAAATGGTTTAGT  600

seq1  CATACTTCACTGC  613
      |||||||||||||
seq2  CATACTTCACTGC  613