BAC Information

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BAC

Clone NameB6Ng01-114D01
Chromosome19 (Build37)
Map Location 28,705,896 - 28,888,037
singlet/doubletdoublet
Overlap geneGlis3, EG434460, EG627788
Upstream geneLOC100042612, Rfx3, LOC666997, LOC433235
Downstream geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114D01.bB6Ng01-114D01.g
ACCDH919774DH919775
length8181,046
definitionDH919774|Mus musculus domesticus DNA, BAC clone: B6Ng01-114D01, 5' end.DH919775|Mus musculus domesticus DNA, BAC clone: B6Ng01-114D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,705,896 - 28,706,714)(28,886,993 - 28,888,037)
sequence
gaattcagaccaagtgaaattaacgtgttagaataatcagacaagactct
aagtacacttacaatgagccatgagttgaatggagcatcgatttcaagca
tgggcgtatgaaaacaagaaaagcagaatactgctaggtagcaaactctt
aggacatacaaatgtcataggttgtacagtacagacatagtaagttaagc
ttagtttaacaaacctgagacatgcaaaaggaatagtgaattcaaaggca
ttgcttcggagacattattatctcttcatcccgaaaaatgcaaaggcaag
tacggttgtctttgaaattaaagttcaagtaagaagcatgaaaatgagct
aaaagactctgatatacatgaaattactctattaaagagtacagtgaatt
acataaattaagtgtttgaccaaattgtctagaactggagaaacatgttc
ttagattgaagatgaaaggggggaaaaaaacaaccaagctcacatctagt
ccactgagatttgacagacaaaccccaggctcagggaaaactgcagttag
atggataactttcttttaaaagcaggaagcaaagccagcaccgttcaatg
tattttaagttttaaaggaagaagctgtcaatcaatagttttatgcccaa
ctgtagtagcacaggaccattaaagcaaaataaatatgtttgcagacttt
caaaatcaaaattttcaactggatttgtttgattgcttgcttgcttgctt
ggctttgctctagtgcttttttattttggttggtgttgttattgttgttt
tagttggttggtatttct
gaattcctatgttggaaagagagagagagagagagagagagagagagaga
gagagagagagagagagaattgtcgagaagctcacagggcagctaacatg
aagaattaggaacatcagaaataaagaaggctttgcctaaacaaggtaga
gggcaaaaactgactccttaaagctatgtgtcctgacttccacacacatg
cagtaacacaagcatgcctatacgtatgtgggcatgcatgcacacgtgtg
catgcacgtgtacatatgcaataataataaataaaaatggccacaggctc
ttccctatttcaaagacagctgtagtgccagccaaacctctgagatatga
aggtcaagttcagagtgaacagatttggtagtgttgggtgcctagtcact
agaggtgtcttcaactagggcaaagtacgtatcgttctcatcaaggctcc
cttcattgacctcagacacacattgtatgtgtttcactatcattctactc
atagaaatttctaccacagagagaaacaggaaatttgtcattaacaggaa
agctatctgaatcttgaaggagtgagatcctgccaacatcaaattgggtg
ccgctgatattaagtatgttgtggattccagggtttttaaaattactgtc
tctgcatcttctgctgatgcccccttgtttgtaatgggtgtgacccatga
gaagtgtaactactcatgcaagattgttagcaatgtctcctgcatcacca
actgcttagaatgctggtcaccattgactcatgagcagagtctgtgccgt
taccaccacccagacgactgcacataggcaacacttctaggaaactgtgg
tgcaatggccgtgaactgcctagagcaccatctctgaatccactggtgct
tccaaggctgtgtgcaagtcatcccagagctgaacaggaagctcactggg
cgtgatctttccgtggatctgacttgccatctgcgaacgctgacaaatag
gatgatgtggagaaggtggggaggctggggaatgtccgggctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_28705896_28706714
seq2: B6Ng01-114D01.b_46_863

seq1  GAATTCAGACCAAGTGAAATTAACGTGTTAGAATAATCAGACAAGACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACCAAGTGAAATTAACGTGTTAGAATAATCAGACAAGACTCT  50

seq1  AAGTACACTTACAATGAGCCATGAGTTGAATGGAGCATCGATTTCAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTTACAATGAGCCATGAGTTGAATGGAGCATCGATTTCAAGCA  100

seq1  TGGGCGTATGAAAACAAGAAAAGCAGAATACTGCTAGGTAGCAAACTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGTATGAAAACAAGAAAAGCAGAATACTGCTAGGTAGCAAACTCTT  150

seq1  AGGACATACAAATGTCATAGGTTGTACAGTACAGACATAGTAAGTTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATACAAATGTCATAGGTTGTACAGTACAGACATAGTAAGTTAAGC  200

seq1  TTAGTTTAACAAACCTGAGACATGCAAAAGGAATAGTGAATTCAAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAACAAACCTGAGACATGCAAAAGGAATAGTGAATTCAAAGGCA  250

seq1  TTGCTTCGGAGACATTATTATCTCTTCATCCCGAAAAATGCAAAGGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCGGAGACATTATTATCTCTTCATCCCGAAAAATGCAAAGGCAAG  300

seq1  TACGGTTGTCTTTGAAATTAAAGTTCAAGTAAGAAGCATGAAAATGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTTGTCTTTGAAATTAAAGTTCAAGTAAGAAGCATGAAAATGAGCT  350

seq1  AAAAGACTCTGATATACATGAAATTACTCTATTAAAGAGTACAGTGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTCTGATATACATGAAATTACTCTATTAAAGAGTACAGTGAATT  400

seq1  ACATAAATTAAGTGTTTGACCAAATTGTCTAGAACTGGAGAAACATGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATTAAGTGTTTGACCAAATTGTCTAGAACTGGAGAAACATGTTC  450

seq1  TTAGATTGAAGATGAAAGGGGGGAAAAAAACAACCAAGCTCACATCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGAAGATGAAAGGGGGGAAAAAAACAACCAAGCTCACATCTAGT  500

seq1  CCACTGAGATTTGACAGACAAACCCCAGGCTCAGGGAAAACTGCAGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGATTTGACAGACAAACCCCAGGCTCAGGGAAAACTGCAGTTAG  550

seq1  ATGGATAACTTTCTTTTAAAAGCAGGAAGCAAAGCCAGCACCGTTCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAACTTTCTTTTAAAAGCAGGAAGCAAAGCCAGCACCGTTCAATG  600

seq1  TATTTTAAGTTTTAAAGGAAGAAGCTGTCAATCAATAGTTTTATGCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGTTTTAAAGGAAGAAGCTGTCAATCAATAGTTTTATGCCCAA  650

seq1  CTGTAGTAGCACAGGACCATTAAAGCAAAATAAATATGTTTGCAGACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTAGCACAGGACCATTAAAGCAAAATAAATATGTTTGCAGACTTT  700

seq1  CAAAATCAAAATTTTCAACTGGATTTGTTTGATTGCTTGCTTGCTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAAAATTTTCAACTGGATTTGTTTGATTGCTTGCTTGCTTGCTT  750

seq1  GGCTTTGCTCTAGTGCTTTTTTATTTTGGTTGGTGTTGTTATTGTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCTTTGCTCTAGTGCTTTTTTATTTTGGTTGGTGTTGTTATTGTTG-TT  799

seq1  TTAGTTGGTTGGTATTTCT  819
      |||||||||||||||||||
seq2  TTAGTTGGTTGGTATTTCT  818

seq1: chr19_28886993_28888037
seq2: B6Ng01-114D01.g_69_1114 (reverse)

seq1  AGAAAGCCC-GACA-TCCCCAGCCTCACCACCTTCTTCACATCATCCTAT  48
      ||||||||| |||| ||||||||||| ||||||||| |||||||||||||
seq2  AGAAAGCCCGGACATTCCCCAGCCTCCCCACCTTCTCCACATCATCCTAT  50

seq1  TTGTCAGCGTTCTGCAGATGGCAAGTCAGATCCACTGAAAGATCACG-CC  97
      |||||||||||| |||||||||||||||||||||| ||||||||||| ||
seq2  TTGTCAGCGTTC-GCAGATGGCAAGTCAGATCCACGGAAAGATCACGCCC  99

seq1  AGTGAGCTTCCTGTTCAGCTCTGGGATGACTTTGCACACAGCCTTGGAAG  147
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTGAGCTTCCTGTTCAGCTCTGGGATGAC-TTGCACACAGCCTTGGAAG  148

seq1  CACCAGTGGATTCAGAGATGGTGCTCTAGGCAGTTCCACGGCCATTGCAC  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACCAGTGGATTCAGAGATGGTGCTCTAGGCAGTT-CACGGCCATTGCAC  197

seq1  CACAGTTTCCTAGAAGTGTTGCCTATGTGCAGTCGTCTGGGTGGTGGTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTCCTAGAAGTGTTGCCTATGTGCAGTCGTCTGGGTGGTGGTAA  247

seq1  CGGCACAGACTCTGCTCATGAGTCAATGGTGACCAGCATTCTAAGCAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACAGACTCTGCTCATGAGTCAATGGTGACCAGCATTCTAAGCAGTT  297

seq1  GGTGATGCAGGAGACATTGCTAACAATCTTGCATGAGTAGTTACACTTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGCAGGAGACATTGCTAACAATCTTGCATGAGTAGTTACACTTCT  347

seq1  CATGGGTCACACCCATTACAAACAAGGGGGCATCAGCAGAAGATGCAGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTCACACCCATTACAAACAAGGGGGCATCAGCAGAAGATGCAGAG  397

seq1  ACAGTAATTTTAAAAACCCTGGAATCCACAACATACTTAATATCAGCGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATTTTAAAAACCCTGGAATCCACAACATACTTAATATCAGCGGC  447

seq1  ACCCAATTTGATGTTGGCAGGATCTCACTCCTTCAAGATTCAGATAGCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTTGATGTTGGCAGGATCTCACTCCTTCAAGATTCAGATAGCTT  497

seq1  TCCTGTTAATGACAAATTTCCTGTTTCTCTCTGTGGTAGAAATTTCTATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTAATGACAAATTTCCTGTTTCTCTCTGTGGTAGAAATTTCTATG  547

seq1  AGTAGAATGATAGTGAAACACATACAATGTGTGTCTGAGGTCAATGAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATGATAGTGAAACACATACAATGTGTGTCTGAGGTCAATGAAGG  597

seq1  GAGCCTTGATGAGAACGATACGTACTTTGCCCTAGTTGAAGACACCTCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGATGAGAACGATACGTACTTTGCCCTAGTTGAAGACACCTCTA  647

seq1  GTGACTAGGCACCCAACACTACCAAATCTGTTCACTCTGAACTTGACCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAGGCACCCAACACTACCAAATCTGTTCACTCTGAACTTGACCTT  697

seq1  CATATCTCAGAGGTTTGGCTGGCACTACAGCTGTCTTTGAAATAGGGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCAGAGGTTTGGCTGGCACTACAGCTGTCTTTGAAATAGGGAAG  747

seq1  AGCCTGTGGCCATTTTTATTTATTATTATTGCATATGTACACGTGCATGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGGCCATTTTTATTTATTATTATTGCATATGTACACGTGCATGC  797

seq1  ACACGTGTGCATGCATGCCCACATACGTATAGGCATGCTTGTGTTACTGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTGCATGCATGCCCACATACGTATAGGCATGCTTGTGTTACTGC  847

seq1  ATGTGTGTGGAAGTCAGGACACATAGCTTTAAGGAGTCAGTTTTTGCCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGGAAGTCAGGACACATAGCTTTAAGGAGTCAGTTTTTGCCCT  897

seq1  CTACCTTGTTTAGGCAAAGCCTTCTTTATTTCTGATGTTCCTAATTCTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGTTTAGGCAAAGCCTTCTTTATTTCTGATGTTCCTAATTCTTC  947

seq1  ATGTTAGCTGCCCTGTGAGCTTCTCGACAATTCTCTCTCTCTCTCTCTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCTGCCCTGTGAGCTTCTCGACAATTCTCTCTCTCTCTCTCTCT  997

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCC-CCATAGGAATTC  1045
      ||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCAACATAGGAATTC  1046