BAC Information

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BAC

Clone NameB6Ng01-114H23
Chromosome19 (Build37)
Map Location 29,927,488 - 30,026,491
singlet/doubletdoublet
Overlap geneIl33
Upstream geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
Downstream geneTrpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1, LOC625995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114H23.bB6Ng01-114H23.g
ACCDH920003DH920004
length1,0981,045
definitionDH920003|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H23, 5' end.DH920004|Mus musculus domesticus DNA, BAC clone: B6Ng01-114H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,927,488 - 29,928,594)(30,025,445 - 30,026,491)
sequence
gaattcaatatataaaaacctcctttaatgaaaatagacctctacattca
gaaacaagatgtgttgaggggttgatattttcctttaccttttctcctca
actccttatttaaggctggaaaagatttccatgatggaaggagaaacatg
gctcagtgtcttcttcctgccttgccaagattccaatgactctaagatgc
cagtggtcacaacatgcaggcgtttcacacagtgataaatggtgcgtatc
tatgctggctggcttagaatggctgttttcttcttctcatcatgcttgat
attaagtactctccataatttcattaaaaatattttttctttgcttctgt
tgtctgttttgtttttttgttttttgttttttttttttttgttttgtttt
gttttgttttgtttttttttgcctacagctggagcttgaacccagagcct
tgcacatgctaagcaagctctctgttaccgagctgtaccttcagtccaag
aaagagaatattatcattactcaaactcaggaaggaaagaagcccagtaa
tgaatagttcttaatttaattatttcactttttatctccaaaaattccct
cttgagatacaaatactgacaggcataaagatatgctatgcttacacgta
tgtggaccttacagttgaaagcttactatgaactggggtcatggtgggca
tgaaagatgctatttaatcttccttgtgggctcttagggtgagtcccatc
tttatctccataataccgtcaggaaagtgagcactgctgaagacacatac
ctaaagttacacagacaaggagcagagctaagcccagaagcagatctgat
agaaccatctagagaagccgcctggacactcatatcttcttccctggatc
ctctccacaggctcgtggcgtgggtccaggttcacgtcaatggggcatgc
acaggcccaggctactctgattatcacttgatcctccattcctagccaaa
gctactccaacatcaattatgaatacatgttctctcctgccctggtatat
tgagtgtaaacttgaatgacaagtccctttggcttgaaggattgttct
gaattctttggtcttctgttgggatcctaacaataggaaaaaaagaggta
gatttatgtaggtcatatcctataatatacacgtgcctccaacagaggct
ggaacagcactacttagttaacttcattaattttacagcaagccacagat
aggatatgcaaaatgaaatagtcttttctccttactgtgaccaagtcttt
gacaagcagcaacttaaaggagaaagggattagttttgcttgtgtctcag
gttctttatggagggaaggtgtgtctatatccgtattctccttaattagt
tctggatccagcccaggggatgtcgcagctactcattttcagggtgggtc
taagccaatcctttccagagaatgctgtcatagacacatacctaaagaca
tgcctcacgaatgccttgagtggttctgaattcaatcaatttgcctttta
aaatgagccgttccagaccttgggatttgatagacaagaggctggagttg
cattttgctgccacatggtctaaagacattaggtctttagaaatttgggg
ttttttgtttttttttgggtttttttttttttggtgttttgttttcataa
ttccatttgaaggaccaagtctacattcagtatggaccaatctttgccta
actgaggggcacgttaacatccataggagatttctgctcgtcataatttt
tggaggatggctgtaagccataaaggttattgatactaaaagaactgcca
ttgactgcatataaaaacgaggccaaacactctgctaattacttttatgt
gtcttttaacttagccattcatgaattatcttgcaagtttttatcttagt
tttacaatgataattcgaggcttttagggttcatggcactgccccaaaat
tacatagctcagagttgtgctaagaagtgtgtacagttaatgttcccacg
gaatcttttttcttgagcacttggtcccaactagtgaaactcttttggga
gaattgtgaactttgggcttgctgaaatacctagacggtggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29927488_29928594
seq2: B6Ng01-114H23.b_43_1140

seq1  GAATTCAATATATAAAAACCTCCTTTAATGAAAATAGACCTCTACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATATAAAAACCTCCTTTAATGAAAATAGACCTCTACATTCA  50

seq1  GAAACAAGATGTGTTGAGGGGTTGATATTTTCCTTTACCTTTTCTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGATGTGTTGAGGGGTTGATATTTTCCTTTACCTTTTCTCCTCA  100

seq1  ACTCCTTATTTAAGGCTGGAAAAGATTTCCATGATGGAAGGAGAAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTATTTAAGGCTGGAAAAGATTTCCATGATGGAAGGAGAAACATG  150

seq1  GCTCAGTGTCTTCTTCCTGCCTTGCCAAGATTCCAATGACTCTAAGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGTCTTCTTCCTGCCTTGCCAAGATTCCAATGACTCTAAGATGC  200

seq1  CAGTGGTCACAACATGCAGGCGTTTCACACAGTGATAAATGGTGCGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCACAACATGCAGGCGTTTCACACAGTGATAAATGGTGCGTATC  250

seq1  TATGCTGGCTGGCTTAGAATGGCTGTTTTCTTCTTCTCATCATGCTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGGCTGGCTTAGAATGGCTGTTTTCTTCTTCTCATCATGCTTGAT  300

seq1  ATTAAGTACTCTCCATAATTTCATTAAAAATATTTTTTCTTTGCTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTACTCTCCATAATTTCATTAAAAATATTTTTTCTTTGCTTCTGT  350

seq1  TGTCTGTTTTGTTTTTTTGTTTTTTGTTTTTTTTTTTTTTGTTTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTTGTTTTTTTGTTTTTTGTTTTTTTTTTTTTTGTTTTGTTTT  400

seq1  GTTTTGTTTTGTTTTTTTTTGCCTACAGCTGGAGCTTGAACCCAGAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTTTTTTGCCTACAGCTGGAGCTTGAACCCAGAGCCT  450

seq1  TGCACATGCTAAGCAAGCTCTCTGTTACCGAGCTGTACCTTCAGTCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCTAAGCAAGCTCTCTGTTACCGAGCTGTACCTTCAGTCCAAG  500

seq1  AAAGAGAATATTATCATTACTCAAACTCAGGAAGGAAAGAAGCCCAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATATTATCATTACTCAAACTCAGGAAGGAAAGAAGCCCAGTAA  550

seq1  TGAATAGTTCTTAATTTAATTATTTCACTTTTTATCTCCAAAAATTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTTCTTAATTTAATTATTTCACTTTTTATCTCCAAAAATTCCCT  600

seq1  CTTGAGATACAAATACTGACAGGCATAAAGATATGCTATGCTTACACGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATACAAATACTGACAGGCATAAAGATATGCTATGCTTACACGTA  650

seq1  TGTGGACCTTACAGTTGAAAGCTTACTATGAACTGGGGTCATGGTGGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCTTACAGTTGAAAGCTTACTATGAACTGGGGTCATGGTGGGCA  700

seq1  TGAAAGATGCTATTTAATCTTCCTTGTGGGCTCTTAGGGTGAGTCCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATGCTATTTAATCTTCCTTGTGGGCTCTTAGGGTGAGTCCCATC  750

seq1  TTTATCTCCATAATACCGTCAGGAAAGTGAGCACTGCTGAAGACACATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCATAATACCGTCAGGAAAGTGAGCACTGCTGAAGACACATAC  800

seq1  CTAAGGTTACACAGACAAGGAGCAGAGCTAAGCCCAGAAGCAGATCTGAT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTACACAGACAAGGAGCAGAGCTAAGCCCAGAAGCAGATCTGAT  850

seq1  AGAACCATCTAGAGAAGCCGCCTGGACACTCATATCTTCTTCCCTGGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCATCTAGAGAAGCCGCCTGGACACTCATATCTTCTTCCCTGGATC  900

seq1  CTCTCCACAGGCTCGTGGCGTGGGTCCAGGTTCACGTCAATGGGCCATGC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTCCACAGGCTCGTGGCGTGGGTCCAGGTTCACGTCAATGGGGCATGC  950

seq1  ACAGGCCCAGGCTACTCTGATTATCACTTGATCCTCCATTCCTAGCCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCCAGGCTACTCTGATTATCACTTGATCCTCCATTCCTAGCCAAA  1000

seq1  GCTAACTCCCAACATCAAATTTATGAATACATGTTCTCTCCTGCCCTGGT  1050
      ||| ||| ||||||||||  ||||||||||||||||||||||||||||||
seq2  GCT-ACT-CCAACATCAA--TTATGAATACATGTTCTCTCCTGCCCTGGT  1046

seq1  ATTATTTGAGTGTAAACTTGAAATGAACAAGTCCCTTTTGGCTTGAAGTA  1100
      ||   ||||||||||||||| |||| ||||||||| |||||||||||| |
seq2  AT--ATTGAGTGTAAACTTG-AATG-ACAAGTCCC-TTTGGCTTGAAGGA  1091

seq1  TTGTTTT  1107
      ||||| |
seq2  TTGTTCT  1098

seq1: chr19_30025445_30026491
seq2: B6Ng01-114H23.g_68_1112 (reverse)

seq1  TCCCCCACGGTCTAGGTATATCAGCAAGGCCCCAAAAGTTTCACAA-TCT  49
      |||||||| |||||||||| ||||||||  ||||||   ||||||| |||
seq2  TCCCCCACCGTCTAGGTATTTCAGCAAG--CCCAAA--GTTCACAATTCT  46

seq1  CCC-AAAGAGTTTCACTAGTTTGGGACCAAGTGCTCAAG-GACAAGATTC  97
      ||| ||||||||||||||| |||||||||||||||||||  | |||||||
seq2  CCCAAAAGAGTTTCACTAG-TTGGGACCAAGTGCTCAAGAAAAAAGATTC  95

seq1  TGTGGGAACATTTAACTGTAACACACTTCTTAGCACAACTCTGAGCTATG  147
       ||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  CGTGGGAACA-TTAACTGT-ACACACTTCTTAGCACAACTCTGAGCTATG  143

seq1  TAATTTT-GGGCAGTGCCATGAACCCTAAAAGCCTCGAATTATCATTGTA  196
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGGGGCAGTGCCATGAACCCTAAAAGCCTCGAATTATCATTGTA  193

seq1  AAACTAAGATAAAACTTTGCAAGATAA-TCATGAATGGCTAAGTTAAAAG  245
      ||||||||||||||  ||||||||||| ||||||||||||||||||||||
seq2  AAACTAAGATAAAAACTTGCAAGATAATTCATGAATGGCTAAGTTAAAAG  243

seq1  ACACATAAAAGTAATTAGCAGAGTGTTTGGCCTCGTTTTTATATGCAGTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAAAGTAATTAGCAGAGTGTTTGGCCTCGTTTTTATATGCAGTC  293

seq1  AATGGCAGTTCTTTTAGTATCAATAACCTTTATGGCTTACAGCCATCCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGTTCTTTTAGTATCAATAACCTTTATGGCTTACAGCCATCCTC  343

seq1  CAAAAATTATGACGAGCAGAAATCTCCTATGGATGTTAACGTGCCCCTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTATGACGAGCAGAAATCTCCTATGGATGTTAACGTGCCCCTCA  393

seq1  GTTAGGCAAAGATTGGTCCATACTGAATGTAGACTTGGTCCTTCAAATGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCAAAGATTGGTCCATACTGAATGTAGACTTGGTCCTTCAAATGG  443

seq1  AATTATGAAAACAAAACACCAAAAAAAAAAAAACCCAAAAAAAAACAAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAAAACAAAACACCAAAAAAAAAAAAACCCAAAAAAAAACAAAA  493

seq1  AACCCCAAATTTCTAAAGACCTAATGTCTTTAGACCATGTGGCAGCAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAATTTCTAAAGACCTAATGTCTTTAGACCATGTGGCAGCAAAA  543

seq1  TGCAACTCCAGCCTCTTGTCTATCAAATCCCAAGGTCTGGAACGGCTCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCCAGCCTCTTGTCTATCAAATCCCAAGGTCTGGAACGGCTCAT  593

seq1  TTTAAAAGGCAAATTGATTGAATTCAGAACCACTCAAGGCATTCGTGAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGCAAATTGATTGAATTCAGAACCACTCAAGGCATTCGTGAGG  643

seq1  CATGTCTTTAGGTATGTGTCTATGACAGCATTCTCTGGAAAGGATTGGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTAGGTATGTGTCTATGACAGCATTCTCTGGAAAGGATTGGCT  693

seq1  TAGACCCACCCTGAAAATGAGTAGCTGCGACATCCCCTGGGCTGGATCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCACCCTGAAAATGAGTAGCTGCGACATCCCCTGGGCTGGATCCA  743

seq1  GAACTAATTAAGGAGAATACGGATATAGACACACCTTCCCTCCATAAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAATTAAGGAGAATACGGATATAGACACACCTTCCCTCCATAAAGA  793

seq1  ACCTGAGACACAAGCAAAACTAATCCCTTTCTCCTTTAAGTTGCTGCTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGACACAAGCAAAACTAATCCCTTTCTCCTTTAAGTTGCTGCTTG  843

seq1  TCAAAGACTTGGTCACAGTAAGGAGAAAAGACTATTTCATTTTGCATATC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACTTGGTCACAGTAAGGAGAAAAGACTATTTCATTTTGCATATC  893

seq1  CTATCTGTGGCTTGCTGTAAAATTAATGAAGTTAACTAAGTAGTGCTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGGCTTGCTGTAAAATTAATGAAGTTAACTAAGTAGTGCTGTT  943

seq1  CCAGCCTCTGTTGGAGGCACGTGTATATTATAGGATATGACCTACATAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTGTTGGAGGCACGTGTATATTATAGGATATGACCTACATAAA  993

seq1  TCTACCTCTTTTTTTCCTATTGTTAGGATCCCAACAGAAGACCAAAGAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCTTTTTTTCCTATTGTTAGGATCCCAACAGAAGACCAAAGAAT  1043

seq1  TC  1047
      ||
seq2  TC  1045