BAC Information

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BAC

Clone NameB6Ng01-116A16
Chromosome19 (Build37)
Map Location 53,410,436 - 53,612,534
singlet/doubletdoublet
Overlap geneMxi1, Smndc1, Dusp5
Upstream geneLOC100043450, Xpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik
Downstream geneLOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A16.bB6Ng01-116A16.g
ACCDH921143DH921144
length800522
definitionDH921143|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A16, 5' end.DH921144|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,611,736 - 53,612,534)(53,410,436 - 53,410,957)
sequence
gaattcatttatcggtacactagaactcctaataacaggaacgcagacct
ctcatggccactcctgtttgtggccccaactctacaggctgcacatagaa
gacactttccctaagctgggcatggtggtagattcctggtcccaccactt
gagaggcggacgaagatcaggtctcaaagtcactcttgattgcagagcaa
acctgaggctacctagggctgcagaagttgctgtccaccaaaacaacagg
ttccttcctttccaagaaggtaaccaaactaagataccaaaaggtaaaaa
tatatattccactccaaggaggttctcaaaacaatggaggtggggctggg
ggaggttgctgaacctaccaataaaatctattgcttcttgaaagtgggag
ctaatgtcagcagtgtggctgtcctccacggggatccacttgtagtgtag
gtgggtggtgcaggcctcggaggtccggcgggaaacattcagcagggctg
tgatgtgcaggttggcgaggaactcgcacttggatgcgtggtaggcactt
ccaaggtagaggaagggaaggatttcaaccgggccaccctagagcaggga
caaaggacaaccaggaaagatccgattagcttgctcattcggaagaagaa
aaacaaccaccctgacctatttgtttcttaaggtgggaggttccctttct
ggtttccaggtagagagtttggagccagggaaattcagccaagggtgtgg
gtggtacctgcactctggcactctctaccctcatgactccagtgacagca

cagctgctaacatcaaagaaattaaacaccagcaataccaccaccaccag
attttcttgtcgtttagcattctttaaagacaaagattttttttttcgtc
ttcatagagaaggaatgagtgttttctatcttcagctttctctcccttct
gactgtattcaaaagttggtagtttctgagagagtaggaggataatttga
tgtttccctcccttggagatagggtctcattaagtagccctgctcacctg
accctctgcagatcacagtggcctcaaaccttagaggtggctgcttctgc
ctcctgactgctgggattaagggtgcgtggcattatacccagcatgttaa
aaagaaaaaaaatttaatgtatactttgactctatgtacatctgggtacc
acatgtgtgcaatgtccacagaggccagatgagggtgtcagatcctctgg
aactggagccaccatggcacttagttagttagttagttagttagttttaa
gagaatgggagtggggtgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_53611736_53612534
seq2: B6Ng01-116A16.b_44_843 (reverse)

seq1  TGCTGTCACT-GAGTCATGAGGGTAGAGAGTGCCAGGGTGCAGGTACCAC  49
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TGCTGTCACTGGAGTCATGAGGGTAGAGAGTGCCAGAGTGCAGGTACCAC  50

seq1  CCACACCCTTGGCTGAATTTCCCTGGCTCCAAACTCTCTACCTGGAAACC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCTTGGCTGAATTTCCCTGGCTCCAAACTCTCTACCTGGAAACC  100

seq1  AGAAAGGGAACCTCCCACCTTAAGAAACAAATAGGTCAGGGTGGTTGTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGAACCTCCCACCTTAAGAAACAAATAGGTCAGGGTGGTTGTTT  150

seq1  TTCTTCTTCCGAATGAGCAAGCTAATCGGATCTTTCCTGGTTGTCCTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCGAATGAGCAAGCTAATCGGATCTTTCCTGGTTGTCCTTTG  200

seq1  TCCCTGCTCTAGGGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTCTAGGGTGGCCCGGTTGAAATCCTTCCCTTCCTCTACCTTGG  250

seq1  AAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTACCACGCATCCAAGTGCGAGTTCCTCGCCAACCTGCACATCA  300

seq1  CAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGCTGAATGTTTCCCGCCGGACCTCCGAGGCCTGCACCACCCAC  350

seq1  CTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTACAAGTGGATCCCCGTGGAGGACAGCCACACTGCTGACATTAG  400

seq1  CTCCCACTTTCAAGAAGCAATAGATTTTATTGGTAGGTTCAGCAACCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTTTCAAGAAGCAATAGATTTTATTGGTAGGTTCAGCAACCTCC  450

seq1  CCCAGCCCCACCTCCATTGTTTTGAGAACCTCCTTGGAGTGGAATATATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCCACCTCCATTGTTTTGAGAACCTCCTTGGAGTGGAATATATA  500

seq1  TTTTTACCTTTTGGTATCTTAGTTTGGTTACCTTCTTGGAAAGGAAGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTTTTGGTATCTTAGTTTGGTTACCTTCTTGGAAAGGAAGGAA  550

seq1  CCTGTTGTTTTGGTGGACAGCAACTTCTGCAGCCCTAGGTAGCCTCAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTTTTGGTGGACAGCAACTTCTGCAGCCCTAGGTAGCCTCAGGT  600

seq1  TTGCTCTGCAATCAAGAGTGACTTTGAGACCTGATCTTCGTCCGCCTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGCAATCAAGAGTGACTTTGAGACCTGATCTTCGTCCGCCTCTC  650

seq1  AAGTGGTGGGACCAGGAATCTACCACCATGCCCAGCTTAGGGAAAGTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGGGACCAGGAATCTACCACCATGCCCAGCTTAGGGAAAGTGTC  700

seq1  TTCTATGTGCAGCCTGTAGAGTTGGGGCCACAAACAGGAGTGGCCATGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTGCAGCCTGTAGAGTTGGGGCCACAAACAGGAGTGGCCATGAG  750

seq1  AGGTCTGCGTTCCTGTTATTAGGAGTTCTAGTGTACCGATAAATGAATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCGTTCCTGTTATTAGGAGTTCTAGTGTACCGATAAATGAATTC  800

seq1: chr19_53410436_53410957
seq2: B6Ng01-116A16.g_82_603

seq1  CAGCTGCTAACATCAAAGAAATTAAACACCAGCAATACCACCACCACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTAACATCAAAGAAATTAAACACCAGCAATACCACCACCACCAG  50

seq1  ATTTTCTTGTCGTTTAGCATTCTTTAAAGACAAAGATTTTTTTTTTCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGTCGTTTAGCATTCTTTAAAGACAAAGATTTTTTTTTTCGTC  100

seq1  TTCATAGAGAAGGAATGAGTGTTTTCTATCTTCAGCTTTCTCTCCCTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGAAGGAATGAGTGTTTTCTATCTTCAGCTTTCTCTCCCTTCT  150

seq1  GACTGTATTCAAAAGTTGGTAGTTTCTGAGAGAGTAGGAGGATAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTATTCAAAAGTTGGTAGTTTCTGAGAGAGTAGGAGGATAATTTGA  200

seq1  TGTTTCCCTCCCTTGGAGATAGGGTCTCATTAAGTAGCCCTGCTCACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCTCCCTTGGAGATAGGGTCTCATTAAGTAGCCCTGCTCACCTG  250

seq1  ACCCTCTGCAGATCACAGTGGCCTCAAACCTTAGAGGTGGCTGCTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGCAGATCACAGTGGCCTCAAACCTTAGAGGTGGCTGCTTCTGC  300

seq1  CTCCTGACTGCTGGGATTAAGGGTGCGTGGCATTATACCCAGCATGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTGCTGGGATTAAGGGTGCGTGGCATTATACCCAGCATGTTAA  350

seq1  AAAGAAAAAAAATTTAATGTATACTTTGACTCTATGTACATCTGGGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAATTTAATGTATACTTTGACTCTATGTACATCTGGGTACC  400

seq1  ACATGTGTGCAATGTCCACAGAGGCCAGATGAGGGTGTCAGATCCTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGCAATGTCCACAGAGGCCAGATGAGGGTGTCAGATCCTCTGG  450

seq1  AACTGGAGCCACCATGGCACTTAGTTAGTTAGTTAGTTAGTTAGTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGCCACCATGGCACTTAGTTAGTTAGTTAGTTAGTTAGTTTTAA  500

seq1  GAGAATGGGAGTGGGGTGGGGA  522
      ||||||||||||||||||||||
seq2  GAGAATGGGAGTGGGGTGGGGA  522