BAC Information

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BAC

Clone NameB6Ng01-116D08
ChromosomeX (Build37)19 (Build37)
Map Location 71,058,841 - 71,059,98618,010,011 - 18,010,054
singlet/doubletsingletsinglet
Overlap genePdzd4
Upstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4
Downstream geneL1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116D08.bB6Ng01-116D08.g
ACCDH921263DH921264
length1,128728
definitionDH921263|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D08, 5' end.DH921264|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,058,841 - 71,059,986)(18,010,011 - 18,010,054)
sequence
gaattccaggacagccagaggtgtatatatagtgagagcctgtctcaaaa
aacaaacctcagcaacaatgcttacaggatactcaagttgctggctcttg
ttctataactataggtgtaatggagcatcggagacacttatgggttttag
gactttcaagctgcagtgaaggaaacaacttagcctataatcttagtact
tagatgataaaggaaagagaaacaggagtttaaagataatatccgctaca
aagagaatatgtgataagcaagatcttgtctgaaaaggaagcaagcattt
ccatttccagttaggtctcaaccctagagtgtccctcagccttcctttct
tttgtaaggacatccctggtctctgtgtatatcagcaatagctttcactt
ttattgtggtaaaatacacataatgtaaaatgtgctattagtgacttttc
atctattcacaatgttcaaccactagcactgtcattccagagcatgttca
ttacctccaaagaaaacaggaccattaaactgccacttctcactcacctt
cctttagctcctggcaaccactacagttttctgtccccatggatttagct
gatggagatgttccatttcaacataaaaggcacatattgtatggaatgct
gtacaatatgtgtcttttgcttaatataaaccatttttaaggtccatcca
tgtttgggcacatctcagcagttcattttccattttgtggtagaataata
atccacttgacatggatcacaacatattcatctgttggtcctatgtactc
aggggaccccagctgacttagagtcacatgtccatttgccatgtagtgtt
ggatagaactgtctgccctgtcccatcactttccaattgtactgtttttt
gttttgtttgtttttttgaacaggatttccctgtggctgtcttggaactc
actctgtagacctcaaacttagagatctgcctgctcccagattcctggga
taaagtgtggacaacactgctggtcaaattatactctcacatgggggtgg
gcagtgtgttcagtctctgttcccacagagaagtagtgccactggctttg
ctttacttcactgtttagtctagggtgg
gaattcaagtactatattgaataggtagggagaaagtgggcagccttgtc
tagtccctgattttagtgggattgcttcaagtttctctccatttagtttg
atgttggctactggtttgctgtatactgcttttactatgtttaggtatgg
gccttgaattcctgatctttctaagacttttaacgtgaagggatgttgaa
ttttgtcaaatgcttttttagcatctaatgagatgatcatgtgttttttt
ttcttttgagtttgtttacatagtggattgtgttgatggatttctgtaca
ttaaaccatccctgcatctctgggatgctattgtggatgtctggaaatgc
ttgctgatggaagcctgatatggctgtcctgagaaactctgctatgcttg
acatacagaggcagaagctcacaaccaaccattggactgagctcaggggt
ccccgatggaggagttggagatgggactaaaggagctgagggggttgcag
ccccatggagggagcaacagtgtcaacaggccagaccacctaccccagag
ctcctggggattggaccaccaaacatagggtacacatggagggacccatg
gcactggccacatatgtggcagaggatggccttgttggacatcagttggg
aggagaaacccttggtcctgagggtgttcaatgtccagtgtaggggaatg
ccagggcaggaagacaggagtgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71058841_71059986
seq2: B6Ng01-116D08.b_44_1171 (reverse)

seq1  CCACCCTAGACTAAAACAGTTGAAAAGTAAGGCAAAGGCCAGTGGCAACT  50
      |||||||||||| |||||||    |||||| ||||| ||||||||| |||
seq2  CCACCCTAGACT-AAACAGT---GAAGTAAAGCAAA-GCCAGTGGC-ACT  44

seq1  ACTTCTCTGTGGGACAGAGGGCCTGGAACACACTGCCCCACCCCCATGTT  100
      |||||||||||||| | || | || |||||||||| ||||||||||||| 
seq2  ACTTCTCTGTGGGA-ACAGAGACT-GAACACACTG-CCCACCCCCATGT-  90

seq1  GAAGAGTATAATTTGACCAGGCAGTGGTGGTCCACACCTTTAATCCCAGG  150
        ||||||||||||||||| ||||| || ||||||||  || ||||||||
seq2  -GAGAGTATAATTTGACCA-GCAGT-GTTGTCCACAC--TTTATCCCAGG  135

seq1  AATCTGGGAGGCAGGCAGATCTCTAAGTTTGAGGTCTACAGAGTGAGTTC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGA-GCAGGCAGATCTCTAAGTTTGAGGTCTACAGAGTGAGTTC  184

seq1  CAAGACAGCCACAGGGAAATCCTGTTTCAAAAAAACAAAACAAAACAAAA  250
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  CAAGACAGCCACAGGGAAATCCTG-TTCAAAAAAAC-AAACAAAACAAAA  232

seq1  AACAGTACAATTGGAAAGTGATGGGACAGGGCAGACAGTTCTATCCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACAATTGGAAAGTGATGGGACAGGGCAGACAGTTCTATCCAACA  282

seq1  CTACATGGCAAATGGACATGTGACTCTAAGTCAGCTGGGGTCCCCTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGCAAATGGACATGTGACTCTAAGTCAGCTGGGGTCCCCTGAGT  332

seq1  ACATAGGACCAACAGATGAATATGTTGTGATCCATGTCAAGTGGATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGACCAACAGATGAATATGTTGTGATCCATGTCAAGTGGATTATT  382

seq1  ATTCTACCACAAAATGGAAAATGAACTGCTGAGATGTGCCCAAACATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCACAAAATGGAAAATGAACTGCTGAGATGTGCCCAAACATGGA  432

seq1  TGGACCTTAAAAATGGTTTATATTAAGCAAAAGACACATATTGTACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTTAAAAATGGTTTATATTAAGCAAAAGACACATATTGTACAGCA  482

seq1  TTCCATACAATATGTGCCTTTTATGTTGAAATGGAACATCTCCATCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATACAATATGTGCCTTTTATGTTGAAATGGAACATCTCCATCAGCT  532

seq1  AAATCCATGGGGACAGAAAACTGTAGTGGTTGCCAGGAGCTAAAGGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATGGGGACAGAAAACTGTAGTGGTTGCCAGGAGCTAAAGGAAGG  582

seq1  TGAGTGAGAAGTGGCAGTTTAATGGTCCTGTTTTCTTTGGAGGTAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGAAGTGGCAGTTTAATGGTCCTGTTTTCTTTGGAGGTAATGAA  632

seq1  CATGCTCTGGAATGACAGTGCTAGTGGTTGAACATTGTGAATAGATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTGGAATGACAGTGCTAGTGGTTGAACATTGTGAATAGATGAAA  682

seq1  AGTCACTAATAGCACATTTTACATTATGTGTATTTTACCACAATAAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAATAGCACATTTTACATTATGTGTATTTTACCACAATAAAAGT  732

seq1  GAAAGCTATTGCTGATATACACAGAGACCAGGGATGTCCTTACAAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTATTGCTGATATACACAGAGACCAGGGATGTCCTTACAAAAGAA  782

seq1  AGGAAGGCTGAGGGACACTCTAGGGTTGAGACCTAACTGGAAATGGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCTGAGGGACACTCTAGGGTTGAGACCTAACTGGAAATGGAAAT  832

seq1  GCTTGCTTCCTTTTCAGACAAGATCTTGCTTATCACATATTCTCTTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTCCTTTTCAGACAAGATCTTGCTTATCACATATTCTCTTTGTA  882

seq1  GCGGATATTATCTTTAAACTCCTGTTTCTCTTTCCTTTATCATCTAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATATTATCTTTAAACTCCTGTTTCTCTTTCCTTTATCATCTAAGTA  932

seq1  CTAAGATTATAGGCTAAGTTGTTTCCTTCACTGCAGCTTGAAAGTCCTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTATAGGCTAAGTTGTTTCCTTCACTGCAGCTTGAAAGTCCTAA  982

seq1  AACCCATAAGTGTCTCCGATGCTCCATTACACCTATAGTTATAGAACAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATAAGTGTCTCCGATGCTCCATTACACCTATAGTTATAGAACAAG  1032

seq1  AGCCAGCAACTTGAGTATCCTGTAAGCATTGTTGCTGAGGTTTGTTTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAACTTGAGTATCCTGTAAGCATTGTTGCTGAGGTTTGTTTTTT  1082

seq1  GAGACAGGCTCTCACTATATATACACCTCTGGCTGTCCTGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCTCTCACTATATATACACCTCTGGCTGTCCTGGAATTC  1128

seq1: chr19_18010011_18010054
seq2: B6Ng01-116D08.g_752_795 (reverse)

seq1  CCCACCCACTCCTGTCTTCCTGCCCTGGCATTTCCCTACACTGG  44
      |||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCACCCACTCCTGTCTTCCTGCCCTGGCATTCCCCTACACTGG  44