BAC Information

Click to search

BAC

Clone NameB6Ng01-116G21
Chromosome19 (Build37)
Map Location 59,406,241 - 59,487,404
singlet/doubletdoublet
Overlap genePdzd8, LOC100043073
Upstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, LOC100034727
Downstream geneEmx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G21.bB6Ng01-116G21.g
ACCDH921430DH921431
length1,144482
definitionDH921430|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G21, 5' end.DH921431|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,486,240 - 59,487,404)(59,406,241 - 59,406,730)
sequence
gaattcacttgtaggcctagcccttctggtatagaatttagcattacaat
acatggcagcagaccaaacctcaacacaggtgcccatctcacctcaccct
tcagctctcactatgcaagatcctgagagttagaacatcaacaggatata
aacacaggatatcttttaggctttgcaatacaatacccaccatgccacat
gtggccattgtggagatgctgggaggcaatcaatccttcagagggcctgg
accattctcacggtcaggggcaggttgactgtacagagggggatggttaa
ctagttagttctaaaggtacattccattcccttgttttccccttcttttt
gccatatactctcctctgttcccccatcttgtccctccacctctccagaa
ggcagactaatgccagagctccatttctggatgcctgacctctggaacta
agcaaaatcaaaacctttccatcactatcagtctcgggtaattcactata
gcaacagaaaatggaccaagacagctgggtagtgtgaacaaaagaaagca
ttcatcatgagaatggattattcttcctctgtcttgttcttcagtgccgt
tctcagactaactgcacccacctgcccactgaaaatcaaagcttctccca
aggccatctctcctcatatcagtctcattccagattcaggtcatttctct
tccttgtccctcaggcccagggcttggtcaaaaaaaatccacaatgagtt
accagctctgcacacccaccaacaccttatgagtcctggtgccctgtctg
cgcctgcgtaaacggtctttatatagtacagcccatagggttctcatctg
agggcccgggactgatggaactcttggcgaatcctggggatacaaaccag
tcaggctattggccatcatcaagctgagatgctcccctgatgccccttct
ctggcatcgttgacaccaggattacaactgctgtgttcaacttgactggg
gacagatgccttatttccactgcttcaggacaatctatctggtctagaat
ttcactcagagctcaagatgctcaaaaggagtagcgccttcaccacctgg
atcctccttgaatcctggactatctctgcaatccctccactgat
ctttgctcagattttctatgatttccccatgactttctggttttcgtttt
ttggtttttggttttgttttttttttaataaggcaatttaaagtagtatt
gtttacttggtctcagactttggctttaatacttattaggtttgagacca
ttcaggcttcagcttttgagaggcccagtttcatttgaaaagacagcaat
agtgtccatcttgtacaagtgttttaagaattagatgagtagttttcata
aagcatgtgacacagggatataatctagaaatacttcatatcaagctctg
tgtacgtgtattaaggctgtccttctgtagacatgtcaaagagcaaacct
cctcttcctcctcctcctccccttccccctcttcctcctcttcctcaatg
aaacattacagaacccccactgactcaaattttacatttgtggccagttc
tcttcccaaactttagaactaggtggccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59486240_59487404
seq2: B6Ng01-116G21.b_44_1187 (reverse)

seq1  ATCAGTGGGGGGGAACTGCAGAGAATAGTCCACAGGATTCCAAGAGAGGA  50
      |||||||| |||  | ||||||| ||||||  ||||||| |||| |||||
seq2  ATCAGTGGAGGG--ATTGCAGAG-ATAGTC--CAGGATT-CAAG-GAGGA  43

seq1  TCACCAGGTGGTGAAGGGCGCTAACTCCTTTTTTGAGCATCTCTGAGCTC  100
      |  |||||||||||| |||||| |||||  |||||||||||| |||||||
seq2  T--CCAGGTGGTGAA-GGCGCT-ACTCC--TTTTGAGCATCT-TGAGCTC  86

seq1  TGAGTGGAAATTCTAAGACCAGGATAGATTGTCCCTGAGCAGTGGAAATT  150
      ||||| |||||||| |||||| ||||||||||||   |||||||||||| 
seq2  TGAGT-GAAATTCT-AGACCA-GATAGATTGTCCTGAAGCAGTGGAAATA  133

seq1  AGGCATCTGTCCCCAAGTTCAAGTTGAACACAGCAGTTGTAATCCTGGTG  200
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  AGGCATCTGTCCCCA--GTCAAGTTGAACACAGCAGTTGTAATCCTGGTG  181

seq1  TCAACGATGCCAGAGAAGGGGGCATCAGGGGAGCATCTCAGCTTGATGAT  250
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAACGATGCCAGAGAA-GGGGCATCAGGGGAGCATCTCAGCTTGATGAT  230

seq1  GGCCCAATAGCCTGACTGGTTTGTATCCCCAGGATTCGCCAAGAGTTCCA  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-CCAATAGCCTGACTGGTTTGTATCCCCAGGATTCGCCAAGAGTTCCA  279

seq1  TCAGTCCCGGGCCCTCAGATGAGAACCCTATGGGCTGTACTATATAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCGGGCCCTCAGATGAGAACCCTATGGGCTGTACTATATAAAGA  329

seq1  CCGTTTACGCAGGCGCAGACAGGGCACCAGGACTCATAAGGTGTTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTACGCAGGCGCAGACAGGGCACCAGGACTCATAAGGTGTTGGTGG  379

seq1  GTGTGCAGAGCTGGTAACTCATTGTGGATTTTTTTTGACCAAGCCCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGAGCTGGTAACTCATTGTGGATTTTTTTTGACCAAGCCCTGGG  429

seq1  CCTGAGGGACAAGGAAGAGAAATGACCTGAATCTGGAATGAGACTGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGACAAGGAAGAGAAATGACCTGAATCTGGAATGAGACTGATAT  479

seq1  GAGGAGAGATGGCCTTGGGAGAAGCTTTGATTTTCAGTGGGCAGGTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGATGGCCTTGGGAGAAGCTTTGATTTTCAGTGGGCAGGTGGGT  529

seq1  GCAGTTAGTCTGAGAACGGCACTGAAGAACAAGACAGAGGAAGAATAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGTCTGAGAACGGCACTGAAGAACAAGACAGAGGAAGAATAATC  579

seq1  CATTCTCATGATGAATGCTTTCTTTTGTTCACACTACCCAGCTGTCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATGATGAATGCTTTCTTTTGTTCACACTACCCAGCTGTCTTGG  629

seq1  TCCATTTTCTGTTGCTATAGTGAATTACCCGAGACTGATAGTGATGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTGTTGCTATAGTGAATTACCCGAGACTGATAGTGATGGAAA  679

seq1  GGTTTTGATTTTGCTTAGTTCCAGAGGTCAGGCATCCAGAAATGGAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGATTTTGCTTAGTTCCAGAGGTCAGGCATCCAGAAATGGAGCTC  729

seq1  TGGCATTAGTCTGCCTTCTGGAGAGGTGGAGGGACAAGATGGGGGAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAGTCTGCCTTCTGGAGAGGTGGAGGGACAAGATGGGGGAACAG  779

seq1  AGGAGAGTATATGGCAAAAAGAAGGGGAAAACAAGGGAATGGAATGTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTATATGGCAAAAAGAAGGGGAAAACAAGGGAATGGAATGTACC  829

seq1  TTTAGAACTAACTAGTTAACCATCCCCCTCTGTACAGTCAACCTGCCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACTAACTAGTTAACCATCCCCCTCTGTACAGTCAACCTGCCCCT  879

seq1  GACCGTGAGAATGGTCCAGGCCCTCTGAAGGATTGATTGCCTCCCAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGTGAGAATGGTCCAGGCCCTCTGAAGGATTGATTGCCTCCCAGCAT  929

seq1  CTCCACAATGGCCACATGTGGCATGGTGGGTATTGTATTGCAAAGCCTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAATGGCCACATGTGGCATGGTGGGTATTGTATTGCAAAGCCTAA  979

seq1  AAGATATCCTGTGTTTATATCCTGTTGATGTTCTAACTCTCAGGATCTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATCCTGTGTTTATATCCTGTTGATGTTCTAACTCTCAGGATCTTG  1029

seq1  CATAGTGAGAGCTGAAGGGTGAGGTGAGATGGGCACCTGTGTTGAGGTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAGAGCTGAAGGGTGAGGTGAGATGGGCACCTGTGTTGAGGTTT  1079

seq1  GGTCTGCTGCCATGTATTGTAATGCTAAATTCTATACCAGAAGGGCTAGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTGCCATGTATTGTAATGCTAAATTCTATACCAGAAGGGCTAGG  1129

seq1  CCTACAAGTGAATTC  1165
      |||||||||||||||
seq2  CCTACAAGTGAATTC  1144

seq1: chr19_59406241_59406730
seq2: B6Ng01-116G21.g_69_556

seq1  GAATTCCTTTGCTCAGATTTTCTATGATTTCCCCATGACTTTCTGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGCTCAGATTTTCTATGATTTCCCCATGACTTTCTGGTTTT  50

seq1  CGTTTTTTGGTTTTTGGTTTTGTTTTTTTTTTAATAAGGCAATTTAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTTGGTTTTTGGTTTTGTTTTTTTTTTAATAAGGCAATTTAAAGT  100

seq1  AGTATTGTTTACTTGGTCTCAGACTTTGGCTTTAATACTTATTAGGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTTTACTTGGTCTCAGACTTTGGCTTTAATACTTATTAGGTTTG  150

seq1  AGACCATTCAGGCTTCAGCTTTTGAGAGGCCCAGTTTCATTTGAAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTCAGGCTTCAGCTTTTGAGAGGCCCAGTTTCATTTGAAAAGAC  200

seq1  AGCAATAGTGTCCATCTTGTACAAGTGTTTTAAGAATTAGATGAGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGTGTCCATCTTGTACAAGTGTTTTAAGAATTAGATGAGTAGTT  250

seq1  TTCATAAAGCATGTGACACAGGGATATAATCTAGAAATACTTCATATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAAGCATGTGACACAGGGATATAATCTAGAAATACTTCATATCAA  300

seq1  GCTCTGTGTACGTGTATTAAGGCTGTCCTTCTGTAGACATGTCAAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGTACGTGTATTAAGGCTGTCCTTCTGTAGACATGTCAAAGAGC  350

seq1  AAACCTCCTCTTCCTCCTCCTCCTCCCCTTCCCCCTCCTCCTCCTCCTCC  400
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  AAACCTCCTCTTCCTCCTCCTCCTCCCCTTCCCCCTCTTCCTCCTCTTCC  400

seq1  ACAATGAAACATTTCAGAACCCCCACTGACTCAAATTTTACATTTATGGC  450
       |||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TCAATGAAACATTACAGAACCCCCACTGACTCAAATTTTACATTTGTGGC  450

seq1  TAGTTCTCTTCCCACAACTTTAGAATTCAGGTGGCCTTGA  490
       ||||||||||||| |||||||||| | ||||||||||||
seq2  CAGTTCTCTTCCCA-AACTTTAGAACT-AGGTGGCCTTGA  488