BAC Information

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BAC

Clone NameB6Ng01-116H12
Chromosome19 (Build37)
Map Location 54,104,148 - 54,254,968
singlet/doubletdoublet
Overlap geneShoc2, Adra2a
Upstream geneXpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik
Downstream geneLOC100043004, Gpam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116H12.bB6Ng01-116H12.g
ACCDH921460DH921461
length1,1501,133
definitionDH921460|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H12, 5' end.DH921461|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,253,791 - 54,254,968)(54,104,148 - 54,105,290)
sequence
gaattcctgccaggacatttctaagtgtcagtaaatattggtttgtctcc
cctttgaaatgcacaccagtcctttcccccactaagtcatatcacaccat
gactgcctacttcatcccctctcagacacatcctagattattctcactgt
atcattctgtcttgctgggcaaaggatccgtccatcagaaatatctaact
gctgccaggtgagaaaaatcaaggctgtctgctgggtccccttggcactc
gagcttcttacagagacatctcttggcggttgtgactatcctatgctaaa
acaagtggagacgtttatctcatggaagcccaagtttccggcaagaactc
aaattttgtatattatgagaaaggagtgggtccagggatgacctgtcatc
tctgtggagatttgtttcagctgtaggattgtcaccaactgcacaagaag
gtgcattttacctggagtttatcagacttacctacatctgctaacctgtc
acttatgtatgctgtacattactttttcaaaagtgagacctctgccttat
gactcaaaaattttcttttgcttgctcaaaggctgtgggctgcattagta
cagcaaagagaggaaatctattgtaagcatgtggcaataaacacttcgag
gaggaagaaactaaatgcgttccagtcttattaaagtatacccacctgaa
gaaggagacgtataatttcggtgggaaaacaactcaatcttgcagaggtt
ttgaaacaacctagccaagcctccctgcccgccaataaaaaactcacgga
ctgttccagcactctgcttcccaaaggcaggatgcaatgtcatctgtgca
cacgttcatctgtaggtacaggcactgcccacattgttcctttccagacc
tctacttttctctgctagggatcaggattaaaccagtagtgatggctttg
gggctcatgggtgaagaggtagtacttgtttcaaagaatcacaaggctcc
tagtaagcaccagtggcttagctccccccaaatgcttctcctcccacctg
tagactgacatttagtccaggaaacttatgatttgacgagacacgagaca
ggccaatggatcttgtagcagtatcaagactgttcgggacttatcactca

gaattcttgaaataaagagttgtgtcttattgtccttatatgaacgtgaa
ctagactatctgcatttgtcctcctaacaaataataagcaagtcctactc
aatgcagtttacttaattgattgcattcattagatacatcaatttaagta
cacatcagttgaagaaaatgcatgtgtaacttttttgttttgttatcttt
tagaaattagtcttgacaaacaaccagttgagcacgcttcccagaggcat
cggtcaccttaccaacctcacgcaccttggtcttggagagaacctgctca
ctcaccttcctgaggaaatcggtaggaacctgagggtgcggcacactgct
ggctgagcccgtgctgtcaaacagataggttggaaaatacactgctttgc
agttcagttaaagcgagctcaggacttttaatggagagctagtggtttta
ctcatgagttgttaaaattaatactgtatttgagaatggtttagaatgtt
gtccataggcttaataaatctcaatttataaacaaatgtttctttttttc
aaaattattttctgttcttccaaacttaacagttccatgggcctgagtta
aattggcagtgtctgtgctgagaggacacttgtggttccgttgtccttct
cgctcagatcttatttatagtagcagtgctggcacttgaggcatcagcca
ctctgcatggcttccaaaagaacatttcttggtgggcttttgggtcagta
gtagtacttgattactaccaatgcctaagtttactttagaatttttccaa
atgtatttatatctattatttatataattaatagagctactttgaatttt
ggcagtgcacattaattgaatagtttctaagttaatattctatggattat
gggtctgctttctatatgtcccgttctggagagaaagagtaaagaatgtt
tttggaagtgtagacatttaaaattgggtcttagccatctttgtagcttt
ggatagcgactttcagcctaatgtcccattcataagtgaggacagtactc
actttgataagccttcctgagtttaaatcctcatgtagacccggctgttc
cactagctatttgcttacctgcctcctaagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_54253791_54254968
seq2: B6Ng01-116H12.b_44_1193 (reverse)

seq1  TGAGTGATAAGTACCGGGACCAGTTCCTTGAATATACTTGCTACCAAGAT  50
      |||||||||||| ||  || ||||  ||||   |||| ||||| ||||||
seq2  TGAGTGATAAGTCCC--GAACAGT--CTTG---ATAC-TGCTA-CAAGAT  41

seq1  CCATTTTGGCCTGGTCTTCTGTTTGTCTTCTGTTCTATATCATTAAGTTT  100
      |||  ||||||| ||||  ||       |||  || | |||| |||| ||
seq2  CCA--TTGGCCT-GTCTCGTG-------TCTCGTC-AAATCA-TAAG-TT  78

seq1  TCCTGGACTAAATGTCAGTCTTACAGGTGTGAGGAGAAGCATTTGGGGGG  150
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  TCCTGGACTAAATGTCAGTC-TACAGGTGGGAGGAGAAGCATTTGGGGGG  127

seq1  AGCTTAAGCCACCTGGTGCTTACTAGGAGCCTTGTTGATTTCTTTGAAAC  200
      ||| ||||||| |||||||||||||||||||||| ||| |||||||||||
seq2  AGC-TAAGCCA-CTGGTGCTTACTAGGAGCCTTG-TGA-TTCTTTGAAAC  173

seq1  AAGTACTACCTCTTCACCCATGAGCCCCAAAGCCATCACCTACTGGTTTA  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGTACTACCTCTTCACCCATGAGCCCCAAAGCCATCA-CTACTGGTTTA  222

seq1  ATCCTGATCCCTAGCAGAGAAAAGTAGAGGTCTGGAAAGGAACAATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGATCCCTAGCAGAGAAAAGTAGAGGTCTGGAAAGGAACAATGTGG  272

seq1  GCAGTGCCTGTACCTACAGATGAACGTGTGCACAGATGACATTGCATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCTGTACCTACAGATGAACGTGTGCACAGATGACATTGCATCCT  322

seq1  GCCTTTGGGAAGCAGAGTGCTGGAACAGTCCGTGAGTTTTTTATTGGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGGAAGCAGAGTGCTGGAACAGTCCGTGAGTTTTTTATTGGCGG  372

seq1  GCAGGGAGGCTTGGCTAGGTTGTTTCAAAACCTCTGCAAGATTGAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGGCTTGGCTAGGTTGTTTCAAAACCTCTGCAAGATTGAGTTGT  422

seq1  TTTCCCACCGAAATTATACGTCTCCTTCTTCAGGTGGGTATACTTTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACCGAAATTATACGTCTCCTTCTTCAGGTGGGTATACTTTAATA  472

seq1  AGACTGGAACGCATTTAGTTTCTTCCTCCTCGAAGTGTTTATTGCCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAACGCATTTAGTTTCTTCCTCCTCGAAGTGTTTATTGCCACAT  522

seq1  GCTTACAATAGATTTCCTCTCTTTGCTGTACTAATGCAGCCCACAGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAATAGATTTCCTCTCTTTGCTGTACTAATGCAGCCCACAGCCTT  572

seq1  TGAGCAAGCAAAAGAAAATTTTTGAGTCATAAGGCAGAGGTCTCACTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGCAAAAGAAAATTTTTGAGTCATAAGGCAGAGGTCTCACTTTT  622

seq1  GAAAAAGTAATGTACAGCATACATAAGTGACAGGTTAGCAGATGTAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAATGTACAGCATACATAAGTGACAGGTTAGCAGATGTAGGTA  672

seq1  AGTCTGATAAACTCCAGGTAAAATGCACCTTCTTGTGCAGTTGGTGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATAAACTCCAGGTAAAATGCACCTTCTTGTGCAGTTGGTGACAA  722

seq1  TCCTACAGCTGAAACAAATCTCCACAGAGATGACAGGTCATCCCTGGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGCTGAAACAAATCTCCACAGAGATGACAGGTCATCCCTGGACC  772

seq1  CACTCCTTTCTCATAATATACAAAATTTGAGTTCTTGCCGGAAACTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTTCTCATAATATACAAAATTTGAGTTCTTGCCGGAAACTTGGG  822

seq1  CTTCCATGAGATAAACGTCTCCACTTGTTTTAGCATAGGATAGTCACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGAGATAAACGTCTCCACTTGTTTTAGCATAGGATAGTCACAAC  872

seq1  CGCCAAGAGATGTCTCTGTAAGAAGCTCGAGTGCCAAGGGGACCCAGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGAGATGTCTCTGTAAGAAGCTCGAGTGCCAAGGGGACCCAGCAG  922

seq1  ACAGCCTTGATTTTTCTCACCTGGCAGCAGTTAGATATTTCTGATGGACG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTGATTTTTCTCACCTGGCAGCAGTTAGATATTTCTGATGGACG  972

seq1  GATCCTTTGCCCAGCAAGACAGAATGATACAGTGAGAATAATCTAGGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTGCCCAGCAAGACAGAATGATACAGTGAGAATAATCTAGGATG  1022

seq1  TGTCTGAGAGGGGATGAAGTAGGCAGTCATGGTGTGATATGACTTAGTGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGAGGGGATGAAGTAGGCAGTCATGGTGTGATATGACTTAGTGG  1072

seq1  GGGAAAGGACTGGTGTGCATTTCAAAGGGGAGACAAACCAATATTTACTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGACTGGTGTGCATTTCAAAGGGGAGACAAACCAATATTTACTG  1122

seq1  ACACTTAGAAATGTCCTGGCAGGAATTC  1178
      ||||||||||||||||||||||||||||
seq2  ACACTTAGAAATGTCCTGGCAGGAATTC  1150

seq1: chr19_54104148_54105290
seq2: B6Ng01-116H12.g_68_1200

seq1  GAATTCTTGAAATAAAGAGTTGTGTCTTATTGTCCTTATATGAACGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAATAAAGAGTTGTGTCTTATTGTCCTTATATGAACGTGAA  50

seq1  CTAGACTATCTGCATTTGTCCTCCTAACAAATAATAAGCAAGTCCTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTATCTGCATTTGTCCTCCTAACAAATAATAAGCAAGTCCTACTC  100

seq1  AATGCAGTTTACTTAATTGATTGCATTCATTAGATACATCAATTTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTTTACTTAATTGATTGCATTCATTAGATACATCAATTTAAGTA  150

seq1  CACATCAGTTGAAGAAAATGCATGTGTAACTTTTTTGTTTTGTTATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGTTGAAGAAAATGCATGTGTAACTTTTTTGTTTTGTTATCTTT  200

seq1  TAGAAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAGTCTTGACAAACAACCAGTTGAGCACGCTTCCCAGAGGCAT  250

seq1  CGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCACCTTACCAACCTCACGCACCTTGGTCTTGGAGAGAACCTGCTCA  300

seq1  CTCACCTTCCTGAGGAAATCGGTAGGAACCTGAGGGTGCGGCACACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTCCTGAGGAAATCGGTAGGAACCTGAGGGTGCGGCACACTGCT  350

seq1  GGCTGAGCCCGTGCTGTCAAACAGATAGGTTGGAAAATACACTGCTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCCCGTGCTGTCAAACAGATAGGTTGGAAAATACACTGCTTTGC  400

seq1  AGTTCAGTTAAAGCGAGCTCAGGACTTTTAATGGAGAGCTAGTGGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTTAAAGCGAGCTCAGGACTTTTAATGGAGAGCTAGTGGTTTTA  450

seq1  CTCATGAGTTGTTAAAATTAATACTGTATTTGAGAATGGTTTAGAATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGTTGTTAAAATTAATACTGTATTTGAGAATGGTTTAGAATGTT  500

seq1  GTCCATAGGCTTAATAAATCTCAATTTATAAACAAATGTTTCTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAGGCTTAATAAATCTCAATTTATAAACAAATGTTTCTTTTTTTC  550

seq1  AAAATTATTTTCTGTTCTTCCAAACTTAACAGTTCCATGGGCCTGAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTCTGTTCTTCCAAACTTAACAGTTCCATGGGCCTGAGTTA  600

seq1  AATTGGCAGTGTCTGTGCTGAGAGGACACTTGTGGTTCCGTTGTCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCAGTGTCTGTGCTGAGAGGACACTTGTGGTTCCGTTGTCCTTCT  650

seq1  CGCTCAGATCTTATTTATAGTAGCAGTGCTGGCACTTGAGGCATCAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGATCTTATTTATAGTAGCAGTGCTGGCACTTGAGGCATCAGCCA  700

seq1  CTCTGCATGGCTTCCAAAAGAACATTTCTTGGTGGGCTTTTGGGTCAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGGCTTCCAAAAGAACATTTCTTGGTGGGCTTTTGGGTCAGTA  750

seq1  GTAGTACTTGATTACTACCAATGCCTAAGTTTACTTTAGAATTTTTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACTTGATTACTACCAATGCCTAAGTTTACTTTAGAATTTTTCCAA  800

seq1  ATGTATTTATATCTATTATTTATATAATTAATAGAGCTACTTTGAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTATATCTATTATTTATATAATTAATAGAGCTACTTTGAATTTT  850

seq1  GGCAGTGCACATTAATTGAATAGTTTCTAAGTTAATAATTCTATGGATTA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCAGTGCACATTAATTGAATAGTTTCTAAGTTAAT-ATTCTATGGATTA  899

seq1  T-GGTCTGCTTTCTATAATGTCCGGTTCTGGAAGAGAAAGAAGTAAAGAA  949
      | |||||||||||||| |||||| ||||||| |||||||| |||||||||
seq2  TGGGTCTGCTTTCTAT-ATGTCCCGTTCTGG-AGAGAAAG-AGTAAAGAA  946

seq1  TGTTTTTGGAAGTGTAGACAATTTAAAAATTGGGTCTTAGCCATCTTTGT  999
      ||||||||||||||||||||  || |||||||||||||||||||||||||
seq2  TGTTTTTGGAAGTGTAGACA--TTTAAAATTGGGTCTTAGCCATCTTTGT  994

seq1  AGCTTTGGATAGCGACTTTCAGCCCTAATGTCCCATTCATAAGTGAGGAC  1049
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTTTGGATAGCGACTTTCAG-CCTAATGTCCCATTCATAAGTGAGGAC  1043

seq1  AGTAACTCACTTTGTATAAGCTTTCCTGAGGTTAAACATCCTACATGTAG  1099
      ||| |||||||||| |||||| |||||||| ||||  ||||| |||||||
seq2  AGT-ACTCACTTTG-ATAAGCCTTCCTGAGTTTAA--ATCCT-CATGTAG  1088

seq1  ACACAGCTGTCCCACTAGCTATTGGCTTA-CTGCCTTCCTAGTGT  1143
      || | ||||| |||||||||||| ||||| |||||| |  |||||
seq2  ACCCGGCTGTTCCACTAGCTATTTGCTTACCTGCCTCCTAAGTGT  1133