BAC Information

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BAC

Clone NameB6Ng01-117F23
Chromosome19 (Build37)
Map Location 23,820,955 - 23,987,253
singlet/doubletdoublet
Overlap geneApba1
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
Downstream geneGm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117F23.bB6Ng01-117F23.g
ACCDH922130DH922131
length4711,078
definitionDH922130|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F23, 5' end.DH922131|Mus musculus domesticus DNA, BAC clone: B6Ng01-117F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,820,955 - 23,821,431)(23,986,170 - 23,987,253)
sequence
ttaagagtgtgttcaggcctcttataaatgccattttctacgtcacacaa
atgagatgaagaaatgaatcagttcacagcaccaggaaaatgagaattat
ttccaagtgtcaacgacaggtagaaagttgcttccctggtcccatgacat
gtggtcccttaacctatcagactttgttatgaatggctgaaagtctgcca
gcacctgacaggtttctcagttctgtcttggctcctgcacgtcctgccta
tttgatctgcagtgcccagctgcatggggggctgaaatggaaatgtgctt
tggaaacaatccctggcaaatctcctaacctaggggcatttccatgggca
gatctaataaggaggtatgagtttgagggagcaggtagaacaacagaaac
tgtgtgcatgcatgtgttgtatgtttatgtgtctataggtgtgttatatg
tgtgtttgtgtgaatatgtat
gaattctcatattcaacactgtggcctgcaactaccaaactggacagatg
aaccatggctttcactgacaaacggcaggcacaccgccgaggagaagaaa
tactttctcagggtggtttccgtcagggcgggcagaggtggaaacaggtg
gaaacaataaagcattatcggggtaaaacaaaacaggcgtgagacaggaa
gatggtgccttacctctttatttgtggaggcttccgtggggtcgccggga
tgaaggggtatgcttgatgactcagcacccaggggtgaggaactgccagg
agacggagactggaacacaggaagagggacagacagcagtgaggatctga
gggctgtggcatcaagtcacccagagcagaaccgcccggacaggaccgca
gttgggggaagactttttggcaagaagaattgcaaactgcactgagcagg
cctggccaggcaagctttcaactccacctcttcaaaggagttctacagct
tcgggactttttcttccctcgggctaatattttaaagaaaatacagactt
atagtaggcatcaaatttaaagcctcaagggtattacacaacatgttaat
tttttttcttagtgaaagttagatacttagaatacaaatgtcacctgctc
aagatgacctacatggaaagctgaaaactaaaattacccagtgtggtttt
tcttgtctgctcacaagtctgcatgttgtctctcttaattcatgggctgc
tgaaagttcaacattcaacccacactgtttggaccatgtcagcaccgttt
caaccctctgtcaaatgacaggctggaaaacaaggcttaggtaaacaggt
ctgggtagcatagtccctgtgttggtgtgatggtgcctctgtagttggca
catgtaggtccaagccataaacacaaacttgggtttgcacatagacacag
ctataccccattaagtacgtgctgatgaatgaccaaagaagcagcactgg
gacacataagagcttggaaacacactccatccacatcagaaaggttctgt
gagctcctggattcttgggagatgaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23820955_23821431
seq2: B6Ng01-117F23.b_43_519

seq1  GAATTCTTAAGAGTGTGTTCAGGCCTCTTATAAATGCCATTTTCTACGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGAGTGTGTTCAGGCCTCTTATAAATGCCATTTTCTACGTC  50

seq1  ACACAAATGAGATGAAGAAATGAATCAGTTCACAGCACCAGGAAAATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGAGATGAAGAAATGAATCAGTTCACAGCACCAGGAAAATGAG  100

seq1  AATTATTTCCAAGTGTCAACGACAGGTAGAAAGTTGCTTCCCTGGTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCCAAGTGTCAACGACAGGTAGAAAGTTGCTTCCCTGGTCCCA  150

seq1  TGACATGTGGTCCCTTAACCTATCAGACTTTGTTATGAATGGCTGAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTGGTCCCTTAACCTATCAGACTTTGTTATGAATGGCTGAAAGT  200

seq1  CTGCCAGCACCTGACAGGTTTCTCAGTTCTGTCTTGGCTCCTGCACGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCACCTGACAGGTTTCTCAGTTCTGTCTTGGCTCCTGCACGTCC  250

seq1  TGCCTATTTGATCTGCAGTGCCCAGCTGCATGGGGGGCTGAAATGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTTGATCTGCAGTGCCCAGCTGCATGGGGGGCTGAAATGGAAAT  300

seq1  GTGCTTTGGAAACAATCCCTGGCAAATCTCCTAACCTAGGGGCATTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGGAAACAATCCCTGGCAAATCTCCTAACCTAGGGGCATTTCCA  350

seq1  TGGGCAGATCTAATAAGGAGGTATGAGTTTGAGGGAGCAGGTAGAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGATCTAATAAGGAGGTATGAGTTTGAGGGAGCAGGTAGAACAAC  400

seq1  AGAAACTGTGTGCATGCATGTGTTGTATGTTTATGTGTCTATAGGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGTGTGCATGCATGTGTTGTATGTTTATGTGTCTATAGGTGTGT  450

seq1  TATATGTGTGTTTGTGTGAATATGTAT  477
      |||||||||||||||||||||||||||
seq2  TATATGTGTGTTTGTGTGAATATGTAT  477

seq1: chr19_23986170_23987253
seq2: B6Ng01-117F23.g_64_1141 (reverse)

seq1  CCCTCATCTCCCAAGACTCCGGGAGCTCACAGAA-CTTTCTGGTGTTGGG  49
      |||||||||||||||| ||| ||||||||||||| ||||||| || ||| 
seq2  CCCTCATCTCCCAAGAATCCAGGAGCTCACAGAACCTTTCTGATG-TGGA  49

seq1  TGGGGTGTGTTTCCAGGCTCTTATGTGTCCCAGTGCTTGCTTCTTTGGTC  99
      ||| ||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TGGAGTGTGTTTCCAAGCTCTTATGTGTCCCAGTGC-TGCTTCTTTGGTC  98

seq1  ATTCATTCAGCACGTACTTAATGGGGTATTAGCTGTGTTCTATGTGCAAA  149
      ||||| |||||||||||||||||||||| |||||||| ||||||||||||
seq2  ATTCA-TCAGCACGTACTTAATGGGGTA-TAGCTGTG-TCTATGTGCAAA  145

seq1  CCCAAGTTTTGTGTTTATGGCTTGGACCTACCTGTGCCCAACTACAGAGG  199
      |||||| |||||||||||||||||||||||| |||| |||||||||||||
seq2  CCCAAG-TTTGTGTTTATGGCTTGGACCTACATGTG-CCAACTACAGAGG  193

seq1  CACCATCACACCAACACAGGGACTATGCTACCCAGACCTGTTTACCTAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCACACCAACACAGGGACTATGCTACCCAGACCTGTTTACCTAAG  243

seq1  CCTTGTTTTCCAGCCTGTCATTTGACAGAGGGTTGAAACGGTGCTGACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTTCCAGCCTGTCATTTGACAGAGGGTTGAAACGGTGCTGACAT  293

seq1  GGTCCAAACAGTGTGGGTTGAATGTTGAACTTTCAGCAGCCCATGAATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAACAGTGTGGGTTGAATGTTGAACTTTCAGCAGCCCATGAATTA  343

seq1  AGAGAGACAACATGCAGACTTGTGAGCAGACAAGAAAAACCACACTGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAACATGCAGACTTGTGAGCAGACAAGAAAAACCACACTGGGT  393

seq1  AATTTTAGTTTTCAGCTTTCCATGTAGGTCATCTTGAGCAGGTGACATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGTTTTCAGCTTTCCATGTAGGTCATCTTGAGCAGGTGACATTT  443

seq1  GTATTCTAAGTATCTAACTTTCACTAAGAAAAAAAATTAACATGTTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAAGTATCTAACTTTCACTAAGAAAAAAAATTAACATGTTGTGT  493

seq1  AATACCCTTGAGGCTTTAAATTTGATGCCTACTATAAGTCTGTATTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTTGAGGCTTTAAATTTGATGCCTACTATAAGTCTGTATTTTCT  543

seq1  TTAAAATATTAGCCCGAGGGAAGAAAAAGTCCCGAAGCTGTAGAACTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTAGCCCGAGGGAAGAAAAAGTCCCGAAGCTGTAGAACTCCT  593

seq1  TTGAAGAGGTGGAGTTGAAAGCTTGCCTGGCCAGGCCTGCTCAGTGCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGGTGGAGTTGAAAGCTTGCCTGGCCAGGCCTGCTCAGTGCAGT  643

seq1  TTGCAATTCTTCTTGCCAAAAAGTCTTCCCCCAACTGCGGTCCTGTCCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTCTTCTTGCCAAAAAGTCTTCCCCCAACTGCGGTCCTGTCCGG  693

seq1  GCGGTTCTGCTCTGGGTGACTTGATGCCACAGCCCTCAGATCCTCACTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTCTGCTCTGGGTGACTTGATGCCACAGCCCTCAGATCCTCACTGC  743

seq1  TGTCTGTCCCTCTTCCTGTGTTCCAGTCTCCGTCTCCTGGCAGTTCCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCCTCTTCCTGTGTTCCAGTCTCCGTCTCCTGGCAGTTCCTCA  793

seq1  CCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGTGCTGAGTCATCAAGCATACCCCTTCATCCCGGCGACCCCAC  843

seq1  GGAAGCCTCCACAAATAAAGAGGTAAGGCACCATCTTCCTGTCTCACGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTCCACAAATAAAGAGGTAAGGCACCATCTTCCTGTCTCACGCC  893

seq1  TGTTTTGTTTTACCCCGATAATGCTTTATTGTTTCCACCTGTTTCCACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTACCCCGATAATGCTTTATTGTTTCCACCTGTTTCCACCT  943

seq1  CTGCCCGCCCTGACGGAAACCACCCTGAGAAAGTATTTCTTCTCCTCGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGCCCTGACGGAAACCACCCTGAGAAAGTATTTCTTCTCCTCGGC  993

seq1  GGTGTGCCTGCCGTTTGTCAGTGAAAGCCATGGTTCATCTGTCCAGTTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCCTGCCGTTTGTCAGTGAAAGCCATGGTTCATCTGTCCAGTTTG  1043

seq1  GTAGTTGCAGGCCACAGTGTTGAATATGAGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  GTAGTTGCAGGCCACAGTGTTGAATATGAGAATTC  1078