BAC Information

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BAC

Clone NameB6Ng01-118A03
Chromosome19 (Build37)
Map Location 42,501,769 - 42,628,484
singlet/doubletdoublet
Overlap geneCrtac1, D19Ertd386e
Upstream geneLOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik
Downstream geneLoxl4, 4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A03.bB6Ng01-118A03.g
ACCDH922601DH922602
length1,1511,177
definitionDH922601|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A03, 5' end.DH922602|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,501,769 - 42,502,932)(42,627,286 - 42,628,484)
sequence
gaattcagtaatctctccagtcactactgcctaggggctgcagtgggatt
ggaaacataaggagcatggggggggacggacaaaggtcttctcatccatc
ctttactctttttctctagcccttcacaccttcttgtacatgtttcaaac
ccaatctcacagtcttctgctacttcttatttcttaaacgccctaagtgg
tccagcgtgtgtttggtgtgataatgaaccaattgatttcatactttctc
ctaaggagagttcacaggtttatgtcccctaagcaaccagccagactctt
cagaaatccagagcagagtccaggctggcctgggagcctatctgcagcct
gcaggaggctcggtgagcaaggatttgtcagcactcttaaatcactgggc
tctgaggaaggcttctcccagcagaaagatccttcctcaggaatcaatag
ctcagggccttccatcacattcaaaattatcctgggacctgtaaaatttc
ttttccccgagcatggcagaaccccaaagtgaaaatccagcagtgggcca
gagagagacctgccagtcagactttgctcatcagtcctgatgccaccatg
accagaagctgatgtgcaaacctcaacacttggccttagctgcagaggaa
aagatcccacagtgttcccagtgatccagcactaatagctccttccaaat
gactagctcttcgcatcgcacctaaagagaagaatcccaaagaccatctt
cccccatctttgctcacctaccctcacaggaagatcctatactcttctta
tactgaatgtaattatactcctctgatcttacgtagaatcagatcaagac
cgagaagttaaataggctgacgtggatctcaaacacagttctcggaatcg
cacttaaagaaaggagctatggctctctggtggcctatatcctcacctcc
cttctttcttatggatgaagacccatcttgtcagtgagactgaagagctg
aacaatcttgagcattttccttggcaataagcacccactgggtgaccttc
aagggcagggaggattttacttctcagaattcagatggcacagggttcct
atgaagaaaggcacaatctgctaagttcagaagaaaccacccaaggagtg
c
gaattcaaagactcttttaataaaatacgatagtacaaaaacctggcata
cgagaaccataggcaatgaacatttataaacagatcttcactggacaaaa
ctactgtaggtaagaaaatgatgaatggagaaaagagggatgctttaata
tacttgacagtacaataaagcaagcagcacataaattacttgatgctggg
aagatagtagccagtgctacataatgctgagcaacctcctttggtttgag
aataatctaggacggctctgaccaccgtgagtacacaaagcacctgaaca
tcggaagtgtgggcagtccgacctgagaggtaaccctgtagggtttccaa
ggcttgggacatgcatgtgtgcacacacacaattaaaatgtctcattatt
tttatgatgactcaatagagatgatgactgcttcggatatactagcttat
ataaaatattaatttcatgtttattcttatactttttaaaggagctgttg
aacttaaaaatcatttctgtggttcacacccctgccccatgtcatgcttc
taatggaacagcactgttccaagatgcttccacagtgctaaagtcatgag
ccagcttttcctctttgtactgtctacttcagcaatatggaaacacaagc
aacctaatctgtacattcacaattatttttaaagtgctaaatacaaaaat
ctactcgtgtttcataaatctcaaagtcagacacgttgtacaacgttatg
cccttgaagtaaaactgatcaccaacacatttaggaacactgctttccat
ttctcctaaaaacagagctttttaaaacttatgtttgaaaccatggaagg
ccctaatttagaactgtttctttgctcattcagaaaggatacccctggct
ttacaatactttctagtattctttattgcttttagtcaacttataaactg
gcagactagaaatgtcaaggcccttcatttcagcagtgtgtatttcattt
gtaagactgactgggaggatcttaaaaatatagtcagttttgtacaaatg
agatgtcagattacaaaataagcagctatcacagcttcgggctctaagaa
tatttatcactaagttcactattcttccccaaagtatcattgctccttgt
tcttggctcggtcatggtattatcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42501769_42502932
seq2: B6Ng01-118A03.b_46_1196

seq1  GAATTCAGTAATCTCTCCAGTCACTACTGCCTAGGGGCTGCAGTGGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATCTCTCCAGTCACTACTGCCTAGGGGCTGCAGTGGGATT  50

seq1  GGAAACATAAGGAGCATGGGGGGGGACGGACAAAGGTCTTCTCATCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATAAGGAGCATGGGGGGGGACGGACAAAGGTCTTCTCATCCATC  100

seq1  CTTTACTCTTTTTCTCTAGCCCTTCACACCTTCTTGTACATGTTTCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTCTTTTTCTCTAGCCCTTCACACCTTCTTGTACATGTTTCAAAC  150

seq1  CCAATCTCACAGTCTTCTGCTACTTCTTATTTCTTAAACGCCCTAAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCACAGTCTTCTGCTACTTCTTATTTCTTAAACGCCCTAAGTGG  200

seq1  TCCAGCGTGTGTTTGGTGTGATAATGAACCAATTGATTTCATACTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCGTGTGTTTGGTGTGATAATGAACCAATTGATTTCATACTTTCTC  250

seq1  CTAAGGAGAGTTCACAGGTTTATGTCCCCTAAGCAACCAGCCAGACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAGAGTTCACAGGTTTATGTCCCCTAAGCAACCAGCCAGACTCTT  300

seq1  CAGAAATCCAGAGCAGAGTCCAGGCTGGCCTGGGAGCCTATCTGCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCAGAGCAGAGTCCAGGCTGGCCTGGGAGCCTATCTGCAGCCT  350

seq1  GCAGGAGGCTCGGTGAGCAAGGATTTGTCAGCACTCTTAAATCACTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGCTCGGTGAGCAAGGATTTGTCAGCACTCTTAAATCACTGGGC  400

seq1  TCTGAGGAAGGCTTCTCCCAGCAGAAAGATCCTTCCTCAGGAATCAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAAGGCTTCTCCCAGCAGAAAGATCCTTCCTCAGGAATCAATAG  450

seq1  CTCAGGGCCTTCCATCACATTCAAAATTATCCTGGGACCTGTAAAATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGCCTTCCATCACATTCAAAATTATCCTGGGACCTGTAAAATTTC  500

seq1  TTTTCCCCGAGCATGGCAGAACCCCAAAGTGAAAATCCAGCAGTGGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCGAGCATGGCAGAACCCCAAAGTGAAAATCCAGCAGTGGGCCA  550

seq1  GAGAGAGACCTGCCAGTCAGACTTTGCTCATCAGTCCTGATGCCACCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACCTGCCAGTCAGACTTTGCTCATCAGTCCTGATGCCACCATG  600

seq1  ACCAGAAGCTGATGTGCAAACCTCAACACTTGGCCTTAGCTGCAGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGCTGATGTGCAAACCTCAACACTTGGCCTTAGCTGCAGAGGAA  650

seq1  AAGATCCCACAGTGTTCCCAGTGATCCAGCACTAATAGCTCCTTCCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCACAGTGTTCCCAGTGATCCAGCACTAATAGCTCCTTCCAAAT  700

seq1  GACTAGCTCTTCGCATCGCACCTAAAGAGAAGAATCCCAAAGACCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCTCTTCGCATCGCACCTAAAGAGAAGAATCCCAAAGACCATCTT  750

seq1  CCCCCATCTTTGCTCACCTACCCTCACAGGAAGATCCTATACTCTTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTTTGCTCACCTACCCTCACAGGAAGATCCTATACTCTTCTTA  800

seq1  TACTGAATGTAATTATACTCCTCTGATCTTACGTAGAATCAGATCAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATGTAATTATACTCCTCTGATCTTACGTAGAATCAGATCAAGAC  850

seq1  CGAGAAGTTAAATAGGCTGACGTGGATCTCAAACACAGTTCTCGGAATCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGTTAAATAGGCTGACGTGGATCTCAAACACAGTTCTCGGAATCG  900

seq1  CACTTAAGGAAAGGAGCTATGGCTCTCTGGTGGCCTATATCCTCACCTCC  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAGAAAGGAGCTATGGCTCTCTGGTGGCCTATATCCTCACCTCC  950

seq1  CTTCTTTCTTATGGATGAAGACCCATCTTGTCAGTGAGACTGAAGAGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTTATGGATGAAGACCCATCTTGTCAGTGAGACTGAAGAGCTG  1000

seq1  AACAATCTTGAGCATTTTCCTTGGCAATAAGCACCCACTGGGTGACCTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTTGAGCATTTTCCTTGGCAATAAGCACCCACTGGGTGACCTTC  1050

seq1  AAGGGCAGGGGAGGATTTTACTTCTCAGAATTCCAGATTGGCACCAGGGT  1100
      ||||||| |||||||||||||||||||||||| |||| ||||| ||||||
seq2  AAGGGCA-GGGAGGATTTTACTTCTCAGAATT-CAGA-TGGCA-CAGGGT  1096

seq1  TCCTAATGAAGAAAGGCCACCAAATCTGCTAAAGTTCCAAGAAGAACCAA  1150
      |||| ||||||||||| |||  |||||||| ||||||  ||||||| | |
seq2  TCCT-ATGAAGAAAGG-CAC--AATCTGCT-AAGTTC--AGAAGAAACCA  1139

seq1  CCCCAAGGAAGTGC  1164
       ||||||| |||||
seq2  -CCCAAGG-AGTGC  1151

seq1: chr19_42627286_42628484
seq2: B6Ng01-118A03.g_66_1242 (reverse)

seq1  GCTGAATAATACCATTTGACTGAAACCAAGGAACAAGGAGCAATGATTAC  50
      |||| |||||||||  |||| | | |||| |||||||||||||||| |||
seq2  GCTG-ATAATACCA--TGACCG-AGCCAA-GAACAAGGAGCAATGA-TAC  44

seq1  TTGTGGGGAGAATAGTGAAAACTTTAAGTGCATAATAATCTTAGAGCCCG  100
      ||  ||| |||||||||  |||||  ||||   |||| ||||||||||| 
seq2  TTTGGGGAAGAATAGTG--AACTT--AGTGATAAATATTCTTAGAGCCC-  89

seq1  GAAGCCTGTTGATTAGCTGCTGTATTTTGT-ATCTGACATCTCATTTTGT  149
      |||| ||| ||| |||||||| |||||||| ||||||||||||| |||||
seq2  GAAG-CTG-TGA-TAGCTGCT-TATTTTGTAATCTGACATCTCA-TTTGT  134

seq1  ACATATACTGACTATATTTTTAAGATTCTTCCAGTCAGTTCTTTACAAAT  199
      ||| | |||||||||||||||||||| || |||||||||   ||||||||
seq2  ACA-AAACTGACTATATTTTTAAGATCCTCCCAGTCAGT--CTTACAAAT  181

seq1  GAAATACACACTGCTGAAATGAAGGGCCTTGACATTTCTAGTTCTGCCAG  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAATACACACTGCTGAAATGAAGGGCCTTGACATTTCTAG-TCTGCCAG  230

seq1  TTTATAAGTTGACTAAAAGCAATAAAGAATACTAGAAAGTATTGTAAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGTTGACTAAAAGCAATAAAGAATACTAGAAAGTATTGTAAAGC  280

seq1  CAGGGGTATTCCTTTCTGAATGAGCAAAGAAACAGTTCTAAATTTAGGGC  349
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGGGTA-TCCTTTCTGAATGAGCAAAGAAACAGTTCTAAA-TTAGGGC  328

seq1  CTTCCATGGTTTCAAACATAAGTTTTTAAAAAGCTCTGTTTTTAGGAGAA  399
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTCCATGGTTTCAAACATAAG-TTTTAAAAAGCTCTGTTTTTAGGAGAA  377

seq1  ATGGAAAGCAGTGTTCCTAAATGTGTTGGTGATCAGTTTTACTTCAAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGCAGTGTTCCTAAATGTGTTGGTGATCAGTTTTACTTCAAGGG  427

seq1  CATAACGTTGTACAACGTGTCTGACTTTGAGATTTATGAAACACGAGTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACGTTGTACAACGTGTCTGACTTTGAGATTTATGAAACACGAGTAG  477

seq1  ATTTTTGTATTTAGCACTTTAAAAATAATTGTGAATGTACAGATTAGGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTATTTAGCACTTTAAAAATAATTGTGAATGTACAGATTAGGTT  527

seq1  GCTTGTGTTTCCATATTGCTGAAGTAGACAGTACAAAGAGGAAAAGCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTTTCCATATTGCTGAAGTAGACAGTACAAAGAGGAAAAGCTGG  577

seq1  CTCATGACTTTAGCACTGTGGAAGCATCTTGGAACAGTGCTGTTCCATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACTTTAGCACTGTGGAAGCATCTTGGAACAGTGCTGTTCCATTA  627

seq1  GAAGCATGACATGGGGCAGGGGTGTGAACCACAGAAATGATTTTTAAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGACATGGGGCAGGGGTGTGAACCACAGAAATGATTTTTAAGTT  677

seq1  CAACAGCTCCTTTAAAAAGTATAAGAATAAACATGAAATTAATATTTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTCCTTTAAAAAGTATAAGAATAAACATGAAATTAATATTTTAT  727

seq1  ATAAGCTAGTATATCCGAAGCAGTCATCATCTCTATTGAGTCATCATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTAGTATATCCGAAGCAGTCATCATCTCTATTGAGTCATCATAAA  777

seq1  AATAATGAGACATTTTAATTGTGTGTGTGCACACATGCATGTCCCAAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAGACATTTTAATTGTGTGTGTGCACACATGCATGTCCCAAGCC  827

seq1  TTGGAAACCCTACAGGGTTACCTCTCAGGTCGGACTGCCCACACTTCCGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACCCTACAGGGTTACCTCTCAGGTCGGACTGCCCACACTTCCGA  877

seq1  TGTTCAGGTGCTTTGTGTACTCACGGTGGTCAGAGCCGTCCTAGATTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGTGCTTTGTGTACTCACGGTGGTCAGAGCCGTCCTAGATTATT  927

seq1  CTCAAACCAAAGGAGGTTGCTCAGCATTATGTAGCACTGGCTACTATCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACCAAAGGAGGTTGCTCAGCATTATGTAGCACTGGCTACTATCTT  977

seq1  CCCAGCATCAAGTAATTTATGTGCTGCTTGCTTTATTGTACTGTCAAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCAAGTAATTTATGTGCTGCTTGCTTTATTGTACTGTCAAGTA  1027

seq1  TATTAAAGCATCCCTCTTTTCTCCATTCATCATTTTCTTACCTACAGTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGCATCCCTCTTTTCTCCATTCATCATTTTCTTACCTACAGTAG  1077

seq1  TTTTGTCCAGTGAAGATCTGTTTATAAATGTTCATTGCCTATGGTTCTCG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCAGTGAAGATCTGTTTATAAATGTTCATTGCCTATGGTTCTCG  1127

seq1  TATGCCAGGTTTTTGTACTATCGTATTTTATTAAAAGAGTCTTTGAATTC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGGTTTTTGTACTATCGTATTTTATTAAAAGAGTCTTTGAATTC  1177