BAC Information

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BAC

Clone NameB6Ng01-118A09
Chromosome19 (Build37)
Map Location 41,124,657 - 41,277,391
singlet/doubletdoublet
Overlap geneDntt, Tmem10, Tll2
Upstream geneCyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155
Downstream geneTm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A09.bB6Ng01-118A09.g
ACCDH922612DH922613
length1,154961
definitionDH922612|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A09, 5' end.DH922613|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,276,226 - 41,277,391)(41,124,657 - 41,125,622)
sequence
gaattcaatgaggcgattgggattcggatagctgctctaagtagtgagct
atgacccctccagggcctcttagtaccttccaagtacctcctagaatcat
ctatccagagaatggaagacagaaatgaatccacggtttgtagccctttg
ttgtttacatccgcttcccactctattcttggggaagaactcacccctag
cttggtatacaacagcctgactggcacaccattacaaccgtgccttagtg
ggttaagaacagatagggtggtgtgtgtctgtcatctagaaagacctgct
ggatcgacaatgagtcactggaacccacctgatggctcccgacccttgtg
cctgcccacagcttgcctgttcattggattgttggagagagcgttcaggt
tgtctcccatgtggctttgttgttggtttgtcctcacagcacagcaactg
gattctaggtggctctaagaggaccggataggagggagttttcagtgcct
ttgttgaccacctcacatcctcacacccagcgtgatgcgatggcgagcct
catgggtccctttcaccaacaggatggctgtaaaaacaacgttgtctaaa
agcaagtggatgagggagtgttgcagccagatttgaaaactgacctgcta
cctcttgaggcatgaactgggtcctctagatttagggaaggtcctaaagt
agagaaatggggagatacacggtagatgctttccgcctcccaggtcaccc
aaactgcctgcgtgaggctatcctgacgcagagatgctcaggcagcctgt
gcaaatcctaggaagctggctgccagcctgcggacacctgcttactattt
agctagtggcttggcaaatgccaaaagcatcagacagctgtgaatgctgg
attcggatgtgatatgtggacttgttggcccctggtggcttaaggttcag
gagccaaagtgagtgtgacaaaggcacagtgtgacaaatggctcatcact
caatttgggctatccccagcccctgcctctgatttcaaatctcacctctg
tctggatttggagcttcacttcaactaccttctcattgctcagatacctt
attagcccagctgtctggaacttgcatgtacacagctctgcctcaaactc
agag
gaattccaagcagactgctggtagctcacctcaaaggaaggagagagact
tcatgactcaggcttgcggtcaggcctggtaaatgggaccggggtacagg
gaccctaagtgcttcaggtggtctgtcacccctggagttcatggaacttc
tgggagtcaaaatgttgagtctacagagtaagactgtaagtcagaaccaa
ccatggtggctcacacttctcacctcagccattcaggaggcagaggcatg
agttccattacaggatacctagaaccaaaaggagtttaaactggccatga
ccttgggttctgaattcataggtttcactgacctcagataggaaaagata
ctttaagaagaaagaaagataggaaaaaagaaaggaaggaaggaaggaag
gaaggaaggaaggaaggaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaaggaagaaagacccacacctat
actccctatactgagcatccataggcacctcctatcgtcagtctctaaat
actacactgtgacaacactgcatgcacttatatagtattaagtaattaat
ctaagagtgattgaaagtctgtggggatgtgtgtggctcatatataaaca
ttcttaccactttgcaggaagaacgtgatcatctgttgctaccgtgatga
ctgctagacgactgagggataactatgggacaactgtgggatgactgagg
gatgattgagggattactgagggatgattgagggatgattgaagaatgac
tgagggatgactgagggatgactgaggatgactgagggatgattgaagaa
tgactgaggatgactgaggatgactgagggatgactgagggatgactgag
gatgacttgagaattgactgaggatgactgatggatgactgaaggatggc
tgcggatgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_41276226_41277391
seq2: B6Ng01-118A09.b_45_1198 (reverse)

seq1  CTCTGAGTTTGAGGCCAGCCTGGTGTACATGGCAGGTTCCAGGACAGCCT  50
      |||||||||||||| |||    |||||||| ||| |||||| ||||| ||
seq2  CTCTGAGTTTGAGG-CAGAGCTGTGTACAT-GCAAGTTCCA-GACAG-CT  46

seq1  GGGCTATATAAGGTATCTTGAAGCAAATGAGAAGGGTAGGTTGAGGTTGA  100
      |||||| |||||||||||   ||| |||||||| |||| ||||| | |||
seq2  GGGCTA-ATAAGGTATCT--GAGC-AATGAGAA-GGTA-GTTGAAG-TGA  89

seq1  AGCTCCAAATCCCAGACAGAGGTGAGATTTGAAATCAGAGGCAGGGGCTG  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAAT-CCAGACAGAGGTGAGATTTGAAATCAGAGGCAGGGGCTG  138

seq1  GGGATAGCCCAAATTGAGTGATGAGCCATTTGTCACACTGTGCCTTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGCCCAAATTGAGTGATGAGCCATTTGTCACACTGTGCCTTTGTC  188

seq1  ACACTCACTTTGGCTCCTGAACCTTAAGCCACCAGGGGCCAACAAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACTTTGGCTCCTGAACCTTAAGCCACCAGGGGCCAACAAGTCCA  238

seq1  CATATCACATCCGAATCCAGCATTCACAGCTGTCTGATGCTTTTGGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACATCCGAATCCAGCATTCACAGCTGTCTGATGCTTTTGGCATT  288

seq1  TGCCAAGCCACTAGCTAAATAGTAAGCAGGTGTCCGCAGGCTGGCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCCACTAGCTAAATAGTAAGCAGGTGTCCGCAGGCTGGCAGCCA  338

seq1  GCTTCCTAGGATTTGCACAGGCTGCCTGAGCATCTCTGCGTCAGGATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTAGGATTTGCACAGGCTGCCTGAGCATCTCTGCGTCAGGATAGC  388

seq1  CTCACGCAGGCAGTTTGGGTGACCTGGGAGGCGGAAAGCATCTACCGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCAGGCAGTTTGGGTGACCTGGGAGGCGGAAAGCATCTACCGTGT  438

seq1  ATCTCCCCATTTCTCTACTTTAGGACCTTCCCTAAATCTAGAGGACCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCATTTCTCTACTTTAGGACCTTCCCTAAATCTAGAGGACCCAG  488

seq1  TTCATGCCTCAAGAGGTAGCAGGTCAGTTTTCAAATCTGGCTGCAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCTCAAGAGGTAGCAGGTCAGTTTTCAAATCTGGCTGCAACACT  538

seq1  CCCTCATCCACTTGCTTTTAGACAACGTTGTTTTTACAGCCATCCTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCCACTTGCTTTTAGACAACGTTGTTTTTACAGCCATCCTGTTG  588

seq1  GTGAAAGGGACCCATGAGGCTCGCCATCGCATCACGCTGGGTGTGAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGGACCCATGAGGCTCGCCATCGCATCACGCTGGGTGTGAGGAT  638

seq1  GTGAGGTGGTCAACAAAGGCACTGAAAACTCCCTCCTATCCGGTCCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGGTCAACAAAGGCACTGAAAACTCCCTCCTATCCGGTCCTCTT  688

seq1  AGAGCCACCTAGAATCCAGTTGCTGTGCTGTGAGGACAAACCAACAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCTAGAATCCAGTTGCTGTGCTGTGAGGACAAACCAACAACAA  738

seq1  AGCCACATGGGAGACAACCTGAACGCTCTCTCCAACAATCCAATGAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATGGGAGACAACCTGAACGCTCTCTCCAACAATCCAATGAACAG  788

seq1  GCAAGCTGTGGGCAGGCACAAGGGTCGGGAGCCATCAGGTGGGTTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGTGGGCAGGCACAAGGGTCGGGAGCCATCAGGTGGGTTCCAGT  838

seq1  GACTCATTGTCGATCCAGCAGGTCTTTCTAGATGACAGACACACACCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTGTCGATCCAGCAGGTCTTTCTAGATGACAGACACACACCACC  888

seq1  CTATCTGTTCTTAACCCACTAAGGCACGGTTGTAATGGTGTGCCAGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTTCTTAACCCACTAAGGCACGGTTGTAATGGTGTGCCAGTCAG  938

seq1  GCTGTTGTATACCAAGCTAGGGGTGAGTTCTTCCCCAAGAATAGAGTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTATACCAAGCTAGGGGTGAGTTCTTCCCCAAGAATAGAGTGGG  988

seq1  AAGCGGATGTAAACAACAAAGGGCTACAAACCGTGGATTCATTTCTGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGATGTAAACAACAAAGGGCTACAAACCGTGGATTCATTTCTGTCT  1038

seq1  TCCATTCTCTGGATAGATGATTCTAGGAGGTACTTGGAAGGTACTAAGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTCTGGATAGATGATTCTAGGAGGTACTTGGAAGGTACTAAGAG  1088

seq1  GCCCTGGAGGGGTCATAGCTCACTACTTAGAGCAGCTATCCGAATCCCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGAGGGGTCATAGCTCACTACTTAGAGCAGCTATCCGAATCCCAA  1138

seq1  TCGCCTCATTGAATTC  1166
      ||||||||||||||||
seq2  TCGCCTCATTGAATTC  1154

seq1: chr19_41124657_41125622
seq2: B6Ng01-118A09.g_68_1028

seq1  GAATTCCAAGCAGACTGCTGGTAGCTCACCTCAAAGGAAGGAGAGAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCAGACTGCTGGTAGCTCACCTCAAAGGAAGGAGAGAGACT  50

seq1  TCATGACTCAGGCTTGCGGTCAGGCCTGGTAAATGGGACCGGGGTACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTCAGGCTTGCGGTCAGGCCTGGTAAATGGGACCGGGGTACAGG  100

seq1  GACCCTAAGTGCTTCAGGTGGTCTGTCACCCCTGGAGTTCATGGAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAAGTGCTTCAGGTGGTCTGTCACCCCTGGAGTTCATGGAACTTC  150

seq1  TGGGAGTCAAAATGTTGAGTCTACAGAGTAAGACTGTAAGTCAGAACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCAAAATGTTGAGTCTACAGAGTAAGACTGTAAGTCAGAACCAA  200

seq1  CCATGGTGGCTCACACTTCTCACCTCAGCCATTCAGGAGGCAGAGGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGGCTCACACTTCTCACCTCAGCCATTCAGGAGGCAGAGGCATG  250

seq1  AGTTCCATTACAGGATACCTAGAACCAAAAGGAGTTTAAACTGGCCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATTACAGGATACCTAGAACCAAAAGGAGTTTAAACTGGCCATGA  300

seq1  CCTTGGGTTCTGAATTCATAGGTTTCACTGACCTCAGATAGGAAAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTTCTGAATTCATAGGTTTCACTGACCTCAGATAGGAAAAGATA  350

seq1  CTTTAAGAAGAAAGAAAGATAGGAAAAAAGAAAGGAAGGAAGGAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAAGAAAGAAAGATAGGAAAAAAGAAAGGAAGGAAGGAAGGAAG  400

seq1  GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  450

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGACCCACACCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGACCCACACCTAT  500

seq1  ACTCCCTATACTGAGCATCCATAGGCACCTCCTATCGTCAGTCTCTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTATACTGAGCATCCATAGGCACCTCCTATCGTCAGTCTCTAAAT  550

seq1  ACTACACTGTGACAACACTGCATGCACTTATATAGTATTAAGTAATTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTGTGACAACACTGCATGCACTTATATAGTATTAAGTAATTAAT  600

seq1  CTAAGAGTGATTGAAAGTCTGTGGGGATGTGTGTGGCTCATATATAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTGATTGAAAGTCTGTGGGGATGTGTGTGGCTCATATATAAACA  650

seq1  TTCTTACCACTTTGCAGGAAGAACGTGATCATCTGTTGCTACCGTGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCACTTTGCAGGAAGAACGTGATCATCTGTTGCTACCGTGATGA  700

seq1  CTGCTAGACGACTGAGGGATAACTATGGGACAACTGTGGGATGACTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGACGACTGAGGGATAACTATGGGACAACTGTGGGATGACTGAGG  750

seq1  GATGATTGAGGGATTACTGAGGGATGATTGAGGGATGATTGAAGAATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTGAGGGATTACTGAGGGATGATTGAGGGATGATTGAAGAATGAC  800

seq1  TGAGGGATGACTGAGGGATGACTGAGGGATGACTGAGGGATGATTGAAGA  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGGGATGACTGAGGGATGACTGA-GGATGACTGAGGGATGATTGAAGA  849

seq1  ATGACTGAGGGATGACTGAGGGATGACTGAGGGATGACTGAGGGATGACT  900
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  ATGACTGA-GGATGACTGA-GGATGACTGAGGGATGACTGAGGGATGACT  897

seq1  GAGGGATGAC-TGAGGAATGACTGAGGGATGACTGAGGGATGACTGAGGG  949
      || ||||||| |||| | ||||||| |||||||||| |||||||||| ||
seq2  GA-GGATGACTTGAGAATTGACTGA-GGATGACTGATGGATGACTGAAGG  945

seq1  ATGGCTGTGGGATGACT  966
      |||||||  ||||||||
seq2  ATGGCTG-CGGATGACT  961