BAC Information

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BAC

Clone NameB6Ng01-118G06
Chromosome19 (Build37)
Map Location 8,711,271 - 8,857,220
singlet/doubletdoublet
Overlap geneChrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957
Upstream geneHrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6
Downstream genePolr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118G06.bB6Ng01-118G06.g
ACCDH922882DH922883
length1,136700
definitionDH922882|Mus musculus domesticus DNA, BAC clone: B6Ng01-118G06, 5' end.DH922883|Mus musculus domesticus DNA, BAC clone: B6Ng01-118G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,711,271 - 8,712,325)(8,856,523 - 8,857,220)
sequence
gaattcacgctgttgaatccttctcagcagcctgttttacaggaaccttt
attaccaccgttccccagctgaagagttctgaatccacgctggatccttc
tcagcagtctgttttaccggaacctttattaaccgctccttccccgtgat
gcagttctgaatcctccctgtagcagggggtcttcgctcatgcctgaaga
tgtttcttttcccgggttttcggcaccacttcttgcgcgcgctcgactgg
ccaggaagaacgacgctgcaacaggatccttctgcacacgtttattggga
gagcttgattgtagaggcgaaaagacctcgagcccagaactggtgctgct
tttataggcctaggacaggcgttctctctcatctgattggttaacttgtc
tctcatctgattggttaacttgtctctcatctgattggttaacttgtctc
tcatctgattggttaacttttgtcaattctcaaaacctcaccttggcaaa
agaacctttactggctatgtatgtgtggtggccagctgtagccaactgcc
actctgcaactgccactctgtaactgccactctgtaactgccactctaac
tgccactctaactgccactctgtaactgccactctgtaactgccactcta
actgccactctaactgccactctgtaactgccactctgcaactgccactc
tgtaactgccactctgtaacggcttcccacaatccctccagccaactctc
cagacatccctccagacatctctctagatatccctccagacatatccccc
ccccaaaaaaaaatccctccagacatctctgtctccagcctggggatttc
ttctttattttcagacccaagatctcaggctatccttgtctactcacttc
cacatatcttaacaatcttcccaattctgctttccctttactcttctttt
tttaacttttaaattttatttatagtgtatgtgcgattcagggaagagga
tagcacacatggagatcagagacattctagttctagcctgcctcatgtgg
cttctgcagatcagttcagatttcccagaaatgctttacctttattctga
gttccttacagcccctcctctttccccccccccttt
gaattcaccctgcttgtcaattctctctctctccaggctgtgtgtggcta
tgggtcccaggaggcattgcccttgcgccctgcaagggagggtgatctct
acttcccggaggatcgagaagtgagcctggtggagctggcactagccacc
aacatccccaagggctgtgcagagacagctgtcagaggttgctgctaggc
tccttcctgggcttaggacaggaattgggtggtctgagtggtgctgatgg
gccagctttcacgtagggcagaatttggaggggtaaaatcccagctgacc
tccatctgtatcatctgattctagttcatgtctcctatctggatggcaaa
ggaaacctggcacctcagggatcaggtaaggcagtgtggatagtaaggct
gtctagaagagcgtatgctgagcctgaggcaggaatctgtggggccgagg
gtgggtgggagtagatggagctgagacccatggaacctacctgatcagag
tgcagctggagcctgtgcctgcttgtcctgcttacatggggttcttgtgg
gtgggttgtagttctggtcagggggcagcagcctccagaaggctatacct
ccatctgtgactacttccttcctgtctcctcacagtgcccagtgcagtgt
cttcactgacagatgacctgctcaaaatcctaccagcaagtgacacgggt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8711271_8712325
seq2: B6Ng01-118G06.b_139_1179

seq1  CCTTCTCAGCAGTCTGTTTTACCGGAACCTTTATTAACCGCTCCTTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGCAGTCTGTTTTACCGGAACCTTTATTAACCGCTCCTTCCCC  50

seq1  GTGATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTCATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTCATGCCT  100

seq1  GAAGATGTTTCTTTTCCCGGGTTTTCGGCACCACTTCTTGCGCGCGCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTTTCTTTTCCCGGGTTTTCGGCACCACTTCTTGCGCGCGCTCG  150

seq1  ACTGGCCAGGAAGAACGACGCTGCAACAGGATCCTTCTGCACACGTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGGAAGAACGACGCTGCAACAGGATCCTTCTGCACACGTTTAT  200

seq1  TGGGAGAGCTTGATTGTAGAGGCGAAAAGACCTCGAGCCCAGAACTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGCTTGATTGTAGAGGCGAAAAGACCTCGAGCCCAGAACTGGTG  250

seq1  CTGCTTTTATAGGCCTAGGACAGGCGTTCTCTCTCATCTGATTGGTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTATAGGCCTAGGACAGGCGTTCTCTCTCATCTGATTGGTTAAC  300

seq1  TTGTCTCTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGGTTAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTCATCTGATTGGTTAACTTGTCTCTCATCTGATTGGTTAACTT  350

seq1  GTCTCTCATCTGATTGGTTAACTTTTGTCAATTCTCAAAACCTCACCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCATCTGATTGGTTAACTTTTGTCAATTCTCAAAACCTCACCTTG  400

seq1  GCAAAAGAACCTTTACTGGCTATGTATGTGTGGTGGCCAGCTGTAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAACCTTTACTGGCTATGTATGTGTGGTGGCCAGCTGTAGCCAA  450

seq1  CTGCCACTCTGCAACTGCCACTCTGTAACTGCCACTCTGTAACTGCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTCTGCAACTGCCACTCTGTAACTGCCACTCTGTAACTGCCACT  500

seq1  CTAACTGCCACTCTAACTGCCACTCTGTAACTGCCACTCTGTAACTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCCACTCTAACTGCCACTCTGTAACTGCCACTCTGTAACTGCCA  550

seq1  CTCTAACTGCCACTCTAACTGCCACTCTGTAACTGCCACTCTGCAACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACTGCCACTCTAACTGCCACTCTGTAACTGCCACTCTGCAACTGC  600

seq1  CACTCTGTAACTGCCACTCTGTAACGGCTTCCCACAATCCCTCCAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAACTGCCACTCTGTAACGGCTTCCCACAATCCCTCCAGCCAA  650

seq1  CTCTCCAGACATCCCTCCAGACATCTCTCTAGATATCCCTCCAGACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGACATCCCTCCAGACATCTCTCTAGATATCCCTCCAGACATAT  700

seq1  CCCCCCCCCAAAAAAAAATCCCTCCAGACATCTCTGTCTCCAGCCTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAAAAAAAAATCCCTCCAGACATCTCTGTCTCCAGCCTGGGG  750

seq1  ATTTCTTCTTTATTTTCAGACCCAAGATCTCA-GCTATCCTTGTCTACTC  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTCTTCTTTATTTTCAGACCCAAGATCTCAGGCTATCCTTGTCTACTC  800

seq1  ACTTCCACATATCTTAACAATCTTCCCAATTCTGCTTTCCCTTTACTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACATATCTTAACAATCTTCCCAATTCTGCTTTCCCTTTACTCTT  850

seq1  CTTTTTTTTAACTTTTAAATTTTATTTTATAGTGTATGTGCGATTCAGGG  899
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  C-TTTTTTTAACTTTTAAATTTTA-TTTATAGTGTATGTGCGATTCAGGG  898

seq1  AAAGAGGATAGCACACATGGAGATCAGAGGACAATTCTAGTTCTAGCCTG  949
       ||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  -AAGAGGATAGCACACATGGAGATCAGA-GAC-ATTCTAGTTCTAGCCTG  945

seq1  CCTTCATGTGGCTTCTGCAGATCAAGTTCAGATTTTCCCAGGAAATGCTT  999
      || |||||||||||||||||||| |||||||| ||||||| |||||||  
seq2  CC-TCATGTGGCTTCTGCAGATC-AGTTCAGA-TTTCCCA-GAAATGC--  989

seq1  TTTACTTTTATTTCTTGAGTTCCCTTACCAGCCCCTCCTCTTTCCCCCCC  1049
      ||||| ||||||   |||||| ||||| ||||||||||||||||||||||
seq2  TTTACCTTTATT--CTGAGTT-CCTTA-CAGCCCCTCCTCTTTCCCCCCC  1035

seq1  CCCTTT  1055
      ||||||
seq2  CCCTTT  1041

seq1: chr19_8856523_8857220
seq2: B6Ng01-118G06.g_68_766 (reverse)

seq1  CCCGTGTCACTTGCTGGTAGTA-TTTGAGCAGGTCATCTGTCAGTGAAGA  49
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  CCCGTGTCACTTGCTGGTAGGATTTTGAGCAGGTCATCTGTCAGTGAAGA  50

seq1  CACTGCACTGGGCACTGTGAGGAGACAGGAAGGAAGTAGTCACAGATGGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACTGGGCACTGTGAGGAGACAGGAAGGAAGTAGTCACAGATGGA  100

seq1  GGTATAGCCTTCTGGAGGCTGCTGCCCCCTGACCAGAACTACAACCCACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGCCTTCTGGAGGCTGCTGCCCCCTGACCAGAACTACAACCCACC  150

seq1  CACAAGAACCCCATGTAAGCAGGACAAGCAGGCACAGGCTCCAGCTGCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAACCCCATGTAAGCAGGACAAGCAGGCACAGGCTCCAGCTGCAC  200

seq1  TCTGATCAGGTAGGTTCCATGGGTCTCAGCTCCATCTACTCCCACCCACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCAGGTAGGTTCCATGGGTCTCAGCTCCATCTACTCCCACCCACC  250

seq1  CTCGGCCCCACAGATTCCTGCCTCAGGCTCAGCATACGCTCTTCTAGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCCCACAGATTCCTGCCTCAGGCTCAGCATACGCTCTTCTAGACA  300

seq1  GCCTTACTATCCACACTGCCTTACCTGATCCCTGAGGTGCCAGGTTTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTATCCACACTGCCTTACCTGATCCCTGAGGTGCCAGGTTTCCT  350

seq1  TTGCCATCCAGATAGGAGACATGAACTAGAATCAGATGATACAGATGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCCAGATAGGAGACATGAACTAGAATCAGATGATACAGATGGAG  400

seq1  GTCAGCTGGGATTTTACCCCTCCAAATTCTGCCCTACGTGAAAGCTGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGGGATTTTACCCCTCCAAATTCTGCCCTACGTGAAAGCTGGCC  450

seq1  CATCAGCACCACTCAGACCACCCAATTCCTGTCCTAAGCCCAGGAAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCACCACTCAGACCACCCAATTCCTGTCCTAAGCCCAGGAAGGAG  500

seq1  CCTAGCAGCAACCTCTGACAGCTGTCTCTGCACAGCCCTTGGGGATGTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAGCAACCTCTGACAGCTGTCTCTGCACAGCCCTTGGGGATGTTG  550

seq1  GTGGCTAGTGCCAGCTCCACCAGGCTCACTTCTCGATCCTCCGGGAAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGTGCCAGCTCCACCAGGCTCACTTCTCGATCCTCCGGGAAGTA  600

seq1  GAGATCACCCTCCCTTGCAGGGCGCAAGGGCAATGCCTCCTGGGACCCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCACCCTCCCTTGCAGGGCGCAAGGGCAATGCCTCCTGGGACCCAT  650

seq1  AGCCACACACAGCCTGGAGAGAGAGAGAATTGACAAGCAGGGTGAATTC  698
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACACAGCCTGGAGAGAGAGAGAATTGACAAGCAGGGTGAATTC  699