BAC Information

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BAC

Clone NameB6Ng01-118H21
Chromosome19 (Build37)
Map Location 17,508,970 - 17,654,593
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneGna14, LOC666665, Vps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118H21.bB6Ng01-118H21.g
ACCDH922956DH922957
length1,1001,064
definitionDH922956|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H21, 5' end.DH922957|Mus musculus domesticus DNA, BAC clone: B6Ng01-118H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,508,970 - 17,510,084)(17,653,524 - 17,654,593)
sequence
gaattccagagccctgccctttcttagtcataagcctctgtttttcaggg
catcactgaaaatacagacatacgcatacacacacacacacacacacaca
cacactcaggaccagacagaagcaaaaaggctccatagaagagttaagca
ttccgatgatttttcttagtttatattcatccattcaggtagtatgactt
gagtagtttaactattttgtttcattttctttgtaatcaataaattttct
ttgtaatacagtaaagcaaaaaaaaaaaaaaaaaaaaaaaaaagtatgag
gaaaagctatctgcccagttggttgtagaaattttaatacacagtagact
cttcctctcctctcttctctcccttcattccccactttctctcacattct
ctacccctccacggggaccttgcaaccactcctgcaactaagtaatccca
gtgactgacaccctctgcctgtcccaccaatggtgtttaatggggttcct
attttatgctaacaggatcttgcccatcaagcaaaaatgtttcctctaaa
ctagcagtattatcgttattgtatttaacattatctatgtcatcacttgt
tccctggagaaaatatgatcatactagagggacaggtaagtgatctatct
gcctgtggcacgtggttcctgagacaggagaatctatactggacctttgg
agaacgttttcctttcagggtgctggatgcactcatagcttactatcctt
gggattaggtctcagttttaatatacacagatgagttggaggataattgg
aggcttggaattggtaaagttgtttcatttattcttagctttccatgata
tcttatttctaaaatgcttcaaatctctatcgaaatggctagatttgagc
tagagtagagtgagtttcaggagaatcaagataaccaattccttcctccc
tttccttagagcaagataaaaaaaaaaagaaacaaatacatttagagatc
aaatctagacttcattaagatggggcagcatactgcagaaaagaatgtga
gcttgtgctttgcagtctagtaagcaatgttcaaattccagttgacatct

gaattccctgaccaccattccaggctacacaggccggttccagatgctca
cagtgctcattcttgcccactgggactagaaagaagaaaggggacaggaa
aggagaatatttttaaatgttcatagctttggttgctagtaagcctaaaa
ttatcttctctgtagttctcaagattcagtgccacattgctttacccatt
ttctactccagtttatagccagtccctcctctgtctataagactttagta
actggcaaaactttacagtatcgcacaactcccaaaaacataccctagtt
atcccttcccaaaggtgacttttaattttagtatgagttatttcacagaa
aacactagtagaggatgtggctttgtcatatatatataatttccatcact
tatttgcagaaatcttatcttttaatatcagctaaacatccacaaatttt
gtcttcataatctccttaggtttctccaattgactattgccatctggatg
gctttgctttgctctggtgtgtatagggcaaattgaaagtaactttattt
tccaaacaaatacatatagttgactgagcagttgccccttttaccaactc
tgatgctttctttacgacaatatagtgagttcttgtatcgaggtctctgg
gactccactatttctaagtcattaacatgataatttgtacgccaatatca
cctgttgtactgtctttttcaatttcagttctatgaggccttttcttttt
gtctttcctctttctcttccttctcttctctcctccttgttttctgttgg
aatgataattgcaacttgggaagaataggtttcatttccatttgtagttt
atggccctctgagaagggaaagtcggggcaggaactggagcagaggccat
atcagaacacttctttacaggcctgctctccagggctctctcggctcctt
tctcgtaccctcagccacctcccagggctggcaccgccacagtgctccag
cacttctcgcatcaatcagaaaatgctgcatgacatgtcacgagccatca
agtttaggcaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17508970_17510084
seq2: B6Ng01-118H21.b_43_1142

seq1  GAATTCCAGAGCCCTGCCCTTTCTTAGTCATAAGCCTCTGTTTTTCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCCTGCCCTTTCTTAGTCATAAGCCTCTGTTTTTCAGGG  50

seq1  CATCACTGAAAATACAGACATACGCATACACACACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGAAAATACAGACATACGCATACACACACACACACACACACACA  100

seq1  CACACTCAGGACCAGACAGAAGCAAAAAGGCTCCATAGAAGAGTTAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCAGGACCAGACAGAAGCAAAAAGGCTCCATAGAAGAGTTAAGCA  150

seq1  TTCCGATGATTTTTCTTAGTTTATATTCATCCATTCAGGTAGTATGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGATGATTTTTCTTAGTTTATATTCATCCATTCAGGTAGTATGACTT  200

seq1  GAGTAGTTTAACTATTTTGTTTCATTTTCTTTGTAATCAATAAATTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTTAACTATTTTGTTTCATTTTCTTTGTAATCAATAAATTTTCT  250

seq1  TTGTAATACAGTAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAGTATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATACAGTAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAGTATGAG  300

seq1  GAAAAGCTATCTGCCCAGTTGGTTGTAGAAATTTTAATACACAGTAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTATCTGCCCAGTTGGTTGTAGAAATTTTAATACACAGTAGACT  350

seq1  CTTCCTCTCCTCTCTTCTCTCCCTTCATTCCCCACTTTCTCTCACATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCCTCTCTTCTCTCCCTTCATTCCCCACTTTCTCTCACATTCT  400

seq1  CTACCCCTCCACGGGGACCTTGCAACCACTCCTGCAACTAAGTAATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCTCCACGGGGACCTTGCAACCACTCCTGCAACTAAGTAATCCCA  450

seq1  GTGACTGACACCCTCTGCCTGTCCCACCAATGGTGTTTAATGGGGTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGACACCCTCTGCCTGTCCCACCAATGGTGTTTAATGGGGTTCCT  500

seq1  ATTTTATGCTAACAGGATCTTGCCCATCAAGCAAAAATGTTTCCTCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCTAACAGGATCTTGCCCATCAAGCAAAAATGTTTCCTCTAAA  550

seq1  CTAGCAGTATTATCGTTATTGTATTTAACATTATCTATGTCATCACTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTATTATCGTTATTGTATTTAACATTATCTATGTCATCACTTGT  600

seq1  TCCCTGGAGAAAATATGATCATACTAGAGGGACAGGTAAGTGATCTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAGAAAATATGATCATACTAGAGGGACAGGTAAGTGATCTATCT  650

seq1  GCCTGTGGCACGTGGTTCCTGAGACAGGAGAATCTATACTGGACCTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGCACGTGGTTCCTGAGACAGGAGAATCTATACTGGACCTTTGG  700

seq1  AGAACGTTTTCCTTTCAGGGTGCTGGATGCACTCATAGCTTACTATCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTTTTCCTTTCAGGGTGCTGGATGCACTCATAGCTTACTATCCTT  750

seq1  GGGATTAGGTCTCAGTTTTAATATACACAGATGAGGTTGGAGGATAATTG  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGATTAGGTCTCAGTTTTAATATACACAGATGA-GTTGGAGGATAATTG  799

seq1  GAGGCTTGGAATTGGTAAAGTTGTTTCATTTATTCTTAGCTTTCCATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTGGAATTGGTAAAGTTGTTTCATTTATTCTTAGCTTTCCATGAT  849

seq1  ATCTTATTTCTAAAATGCTTCAAATCTCTATCGAAATGGCTAGATTTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTTCTAAAATGCTTCAAATCTCTATCGAAATGGCTAGATTTGAG  899

seq1  CTAGAGTAGAGTGAGTTTCAGGAGAATCAAGATAACCAATTCCTTCCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTAGAGTGAGTTTCAGGAGAATCAAGATAACCAATTCCTTCCTCC  949

seq1  CTTTCCCTTAGGAGCAAAGATAAAAAAAAAAAAGAAACAAAATACATTTA  1000
      |||| ||||| |||| ||||| |||||||||||||||| |||||||||||
seq2  CTTT-CCTTA-GAGC-AAGAT-AAAAAAAAAAAGAAAC-AAATACATTTA  994

seq1  GGAAGATCAAATTCTAGACTTCATTAAGATGGGGGCAGCATAACTGCAG-  1049
      |  |||||||| |||||||||||||||||| |||||||||| ||||||| 
seq2  G--AGATCAAA-TCTAGACTTCATTAAGAT-GGGGCAGCAT-ACTGCAGA  1039

seq1  AAAGAATGTGAGGCTTTGTGGCTTTGCAGTCTAGTAGGCCAATGTTCAAA  1099
      ||||||||||||   |||| |||||||||||||||| | |||||||||||
seq2  AAAGAATGTGAG--CTTGT-GCTTTGCAGTCTAGTAAG-CAATGTTCAAA  1085

seq1  TTCCAGTTGAGCATCT  1115
      |||||||||| |||||
seq2  TTCCAGTTGA-CATCT  1100

seq1: chr19_17653524_17654593
seq2: B6Ng01-118H21.g_69_1132 (reverse)

seq1  GACTTGCCTAAACCTGATTGGCTCGTGGACATGTCATGCAGCATTTTCTT  50
      ||||||||||||| ||| |||||||| ||||||||||||||||||||| |
seq2  GACTTGCCTAAACTTGA-TGGCTCGT-GACATGTCATGCAGCATTTTC-T  47

seq1  GATTGATGCG-GGAGTGCTGGGGCCACTGTGGCGGTGCCAGCCCTGGGAG  99
      |||||||||| | |||||||| | ||||||||||||||||||||||||||
seq2  GATTGATGCGAGAAGTGCTGGAG-CACTGTGGCGGTGCCAGCCCTGGGAG  96

seq1  GTGGGCCTGAGGGGTACGAGAAAAGGAGCCGAGAGAGCCCTGGAGAGCAG  149
      ||||  |||| ||||||||| |||||||||||||||||||||||||||||
seq2  GTGG--CTGA-GGGTACGAG-AAAGGAGCCGAGAGAGCCCTGGAGAGCAG  142

seq1  GCCTGTAAGGGAGTGTTCTGATATGGCCTCTGCTCCAGTTCCTGCCCCGA  199
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAAAGAAGTGTTCTGATATGGCCTCTGCTCCAGTTCCTGCCCCGA  192

seq1  C-TTCCCTTCTCAGAGGGCCATAAACTACAAATGGAAATGAAACCTATTC  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTTCTCAGAGGGCCATAAACTACAAATGGAAATGAAACCTATTC  242

seq1  TTCCCAAGTTGCAATTATCATTCCAACAGAAAACAAGGAGGAGAGAAGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTTGCAATTATCATTCCAACAGAAAACAAGGAGGAGAGAAGAG  292

seq1  AAGGAAGAGAAAGAGGAAAGACAAAAAGAAAAGGCCTCATAGAACTGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAGAAAGAGGAAAGACAAAAAGAAAAGGCCTCATAGAACTGAAA  342

seq1  TTGAAAAAGACAGTACAACAGGTGATATTGGCGTACAAATTATCATGTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAGACAGTACAACAGGTGATATTGGCGTACAAATTATCATGTTA  392

seq1  ATGACTTAGAAATAGTGGAGTCCCAGAGACCTCGATACAAGAACTCACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTAGAAATAGTGGAGTCCCAGAGACCTCGATACAAGAACTCACTA  442

seq1  TATTGTCGTAAAGAAAGCATCAGAGTTGGTAAAAGGGGCAACTGCTCAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCGTAAAGAAAGCATCAGAGTTGGTAAAAGGGGCAACTGCTCAGT  492

seq1  CAACTATATGTATTTGTTTGGAAAATAAAGTTACTTTCAATTTGCCCTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATATGTATTTGTTTGGAAAATAAAGTTACTTTCAATTTGCCCTAT  542

seq1  ACACACCAGAGCAAAGCAAAGCCATCCAGATGGCAATAGTCAATTGGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGAGCAAAGCAAAGCCATCCAGATGGCAATAGTCAATTGGAGA  592

seq1  AACCTAAGGAGATTATGAAGACAAAATTTGTGGATGTTTAGCTGATATTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAGGAGATTATGAAGACAAAATTTGTGGATGTTTAGCTGATATTA  642

seq1  AAAGATAAGATTTCTGCAAATAAGTGATGGAAATTATATATATATGACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAGATTTCTGCAAATAAGTGATGGAAATTATATATATATGACAA  692

seq1  AGCCACATCCTCTACTAGTGTTTTCTGTGAAATAACTCATACTAAAATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATCCTCTACTAGTGTTTTCTGTGAAATAACTCATACTAAAATTA  742

seq1  AAAGTCACCTTTGGGAAGGGATAACTAGGGTATGTTTTTGGGAGTTGTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACCTTTGGGAAGGGATAACTAGGGTATGTTTTTGGGAGTTGTGC  792

seq1  GATACTGTAAAGTTTTGCCAGTTACTAAAGTCTTATAGACAGAGGAGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTAAAGTTTTGCCAGTTACTAAAGTCTTATAGACAGAGGAGGGA  842

seq1  CTGGCTATAAACTGGAGTAGAAAATGGGTAAAGCAATGTGGCACTGAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATAAACTGGAGTAGAAAATGGGTAAAGCAATGTGGCACTGAATC  892

seq1  TTGAGAACTACAGAGAAGATAATTTTAGGCTTACTAGCAACCAAAGCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACTACAGAGAAGATAATTTTAGGCTTACTAGCAACCAAAGCTAT  942

seq1  GAACATTTAAAAATATTCTCCTTTCCTGTCCCCTTTCTTCTTTCTAGTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTAAAAATATTCTCCTTTCCTGTCCCCTTTCTTCTTTCTAGTCC  992

seq1  CAGTGGGCAAGAATGAGCACTGTGAGCATCTGGAACCGGCCTGTGTAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCAAGAATGAGCACTGTGAGCATCTGGAACCGGCCTGTGTAGCC  1042

seq1  TGGAATGGTGGTCAGGGAATTC  1070
      ||||||||||||||||||||||
seq2  TGGAATGGTGGTCAGGGAATTC  1064