BAC Information

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BAC

Clone NameB6Ng01-121K10
Chromosome19 (Build37)
Map Location 17,404,747 - 17,567,437
singlet/doubletdoublet
Overlap geneGcnt1, Rfk, Pcsk5
Upstream geneGnaq, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
Downstream geneEef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121K10.bB6Ng01-121K10.g
ACCDH925282DH925283
length1,1961,125
definitionDH925282|Mus musculus domesticus DNA, BAC clone: B6Ng01-121K10, 5' end.DH925283|Mus musculus domesticus DNA, BAC clone: B6Ng01-121K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,566,216 - 17,567,437)(17,404,747 - 17,405,877)
sequence
gaattccatgccctaatgctcaagcctttgatgtagagctagctcccttc
catcactgatccccttcatcttagaaaatactagaaattccttaagtata
tcaatgctttgggaaatcgccttatcaccaatagcaaagatttgcacact
tagcgagtcctgtacatgcctactattccataagggtgaaaggatgaatg
gctttcctgcaaggccaatgatgctctcaaggcaaaggcagaaatgcagg
gtgtctccaggccatgctgtttcacccattagacagatttggagacgctc
tttcattgaaccccttccggctaacaacatagtccatctggagcacagag
cctccgagcctaagaaaagagacagtgtcggtgtgccttctcctttcagg
ggtgttaataagggaaaatgctgaactactgtgattatccatggcttaaa
aatagctcatcacctgccaatatgaaggaaggccctggcgggctatgaaa
atgtcgggaagaacaatggctttcgagagagactctttgtgatctgtgag
agagacaaccccgcagactgcaaaacagccagccttgtgcaatgggttct
tattgtaagtgaaccctgaaaactggtcctggggcgttcccatggcatag
aggaaccaaagagctttcacaaaacaatcaggcgcagaaacttgaaatga
agggaagagatggccagcaattacccagaagactcaaacattagatgagc
agccaatttaggtatttcatggtggggcaaagctttcctcaaaattggca
gataattgttagcccgctgtctactttatgtgttattgtgtagacttaat
cacactgtgaaatcccccttgtctttagtcctaagtgccactggaatgct
gtgagaatggtcacatgaggctcattagagcgggagcttggctttgttga
gcctggctagctggctgtaccctgaatctttttctgtgatatcaccaagc
ttttgtgtacggcattgtggccctgaagcagagcatctcaagctcagcaa
gaaagtgttcttcatggtggctgctcctgcaggtgtgggctttcattgta
ttacatacatggttctgttcacatgatacacttaaccgcatactgtcaca
ggcaattccaattgccagttcttttatctacgcagcttcaacaacg
gaattctaaaacagagaaggtaattaaagagaggacaaggagcataaagt
agtattttgtaggacaagagaaaagtctcctccgaaacaagtttctcagc
atttcaaagaacattcagaggcttcctggtgtggtgggacaaacttctag
gccttgaatgccaatgatgtttcctccagtgtcctgatgtggccaggtga
gatgccagtttaacagcgggacaagatatcactgcacaggacagagtgaa
caaaaacaaacagaaaagaaaagagattaaaagaaaggaaaagagaagaa
aagaaagacacacaacaaagaattagtaagtgcaatcgtttacagtgtct
tctcgggctcaaaactatcccctttgctatgaggccagattttcttactc
aggaggcagaggcaggtggatttctgagttcgaggccagtctggtcttcc
aggacagccagggctatacagagaaaccctgtctcaaaaaacaaacaaac
aaaaaaggaggttgacttaattagagaatagagatggcttaatagaagat
ccattgttctcacattaaagccagaagcaggggtaaaaataagcagcaaa
cgtaatttcaaaggtgtcttagaattgctatgagagacaactgaggcttg
atgtggtagcacgaacctctcgtcccaaaacttaggaggcagaggcaaag
tctgctctatgtagttaagttccagggcagccaggactatctcaacacct
ggaaaatctgacctgcagataaacagaacaagggcacaggtggagactgt
ggccatatatgtctcaactgtccacatgccacgaatgccagggctctgct
ggttttaagaataaaaccttctatcattttcatcactagttactcctgat
gacctcaacaggcaggaaacccttgcaagggtagaatccagcctgccttg
gttgattcagggtggtgacacactttgaaaaaaggttaaaaccttgaaat
ctgaagaccctggaagcaggacaatccgctgggtatcacatggtcttaaa
ggcctactgaactggagacagattgtgactgtgttggagtttatccctaa
tgttgttcatttgtgagagatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17566216_17567437
seq2: B6Ng01-121K10.b_47_1242 (reverse)

seq1  CGTTGTTTTGAAGCTGCAGTAAATAAAAAGAAAACTTGCCCATAAATGAG  50
      |||||  |||||||||| ||| |||||   | |||| ||     |||  |
seq2  CGTTG--TTGAAGCTGC-GTAGATAAA---AGAACTGGC-----AATTGG  39

seq1  AATTTTGGCCGTGGCAGTATGCGGTCTAAGTGATTCATGGTGAAACAGAA  100
      ||  ||| | ||| ||||||||||| ||||||  |||| ||| |||||||
seq2  AA--TTGCCTGTGACAGTATGCGGT-TAAGTGTATCAT-GTG-AACAGAA  84

seq1  CCATTGTA-GTAATAACAATGAAAGCCCCACACCTGCCAAGGAGGCAGGC  149
      ||| |||| ||||| |||||||||| |||||||||||  |||| ||| ||
seq2  CCA-TGTATGTAAT-ACAATGAAAG-CCCACACCTGC--AGGA-GCA-GC  127

seq1  CACCATGA--GACACTGTCTTGCTGGGCTGTGAGATGCTCTGCTTCAGGG  197
      ||||||||   ||||| |||||||| ||| ||||||||||||||||||||
seq2  CACCATGAAGAACACTTTCTTGCTGAGCT-TGAGATGCTCTGCTTCAGGG  176

seq1  CCCACAATGGCCGTAACACAGGAGCTTTGTGATATCACAG-AAAAGATTC  246
       ||||||| ||||| |||||  ||||| |||||||||||| |||||||| 
seq2  -CCACAAT-GCCGT-ACACAAAAGCTTGGTGATATCACAGAAAAAGATT-  222

seq1  CAGGGTACAGCCAGCTAGCCAGGCTCCACAAAGCCAAGCTCCCGCTCCTA  296
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  CAGGGTACAGCCAGCTAGCCAGGCTCAACAAAGCCAAGCTCCCGCT-CTA  271

seq1  ATGAGCCTCATGTGACCATTCTCACAGCATTCCAGTGGCACTTAGGACTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCTCATGTGACCATTCTCACAGCATTCCAGTGGCACTTAGGACTA  321

seq1  AAGACAAGGGGGATTTCACAGTGTGATTAAGTCTACACAATAACACATAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGGGGGATTTCACAGTGTGATTAAGTCTACACAATAACACATAA  371

seq1  AGTAGACAGCGGGCTAACAATTATCTGCCAATTTTGAGGAAAGCTTTGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACAGCGGGCTAACAATTATCTGCCAATTTTGAGGAAAGCTTTGCC  421

seq1  CCACCATGAAATACCTTAAATTGGCTGCTCATCTAATGTTTGAGTCTTCT  496
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCACCATGAAATACC-TAAATTGGCTGCTCATCTAATGTTTGAGTCTTCT  470

seq1  GGGTAATTGCTGGCCATCTCTTCCCTTCATTTCAAGTTTCTGCGCCTGAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTGCTGGCCATCTCTTCCCTTCATTTCAAGTTTCTGCGCCTGAT  520

seq1  TGTTTTGTGAAAGCTCTTTGGTTCCTCTATGCCATGGGAACGCCCCAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGAAAGCTCTTTGGTTCCTCTATGCCATGGGAACGCCCCAGGA  570

seq1  CCAGTTTTCAGGGTTCACTTACAATAAGAACCCATTGCACAAGGCTGGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTCAGGGTTCACTTACAATAAGAACCCATTGCACAAGGCTGGCT  620

seq1  GTTTTGCAGTCTGCGGGGTTGTCTCTCTCACAGATCACAAAGAGTCTCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCAGTCTGCGGGGTTGTCTCTCTCACAGATCACAAAGAGTCTCTC  670

seq1  TCGAAAGCCATTGTTCTTCCCGACATTTTCATAGCCCGCCAGGGCCTTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGCCATTGTTCTTCCCGACATTTTCATAGCCCGCCAGGGCCTTCC  720

seq1  TTCATATTGGCAGGTGATGAGCTATTTTTAAGCCATGGATAATCACAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTGGCAGGTGATGAGCTATTTTTAAGCCATGGATAATCACAGTA  770

seq1  GTTCAGCATTTTCCCTTATTAACACCCCTGAAAGGAGAAGGCACACCGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCATTTTCCCTTATTAACACCCCTGAAAGGAGAAGGCACACCGAC  820

seq1  ACTGTCTCTTTTCTTAGGCTCGGAGGCTCTGTGCTCCAGATGGACTATGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTTTTCTTAGGCTCGGAGGCTCTGTGCTCCAGATGGACTATGT  870

seq1  TGTTAGCCGGAAGGGGTTCAATGAAAGAGCGTCTCCAAATCTGTCTAATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCGGAAGGGGTTCAATGAAAGAGCGTCTCCAAATCTGTCTAATG  920

seq1  GGTGAAACAGCATGGCCTGGAGACACCCTGCATTTCTGCCTTTGCCTTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAACAGCATGGCCTGGAGACACCCTGCATTTCTGCCTTTGCCTTGA  970

seq1  GAGCATCATTGGCCTTGCAGGAAAGCCATTCATCCTTTCACCCTTATGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCATTGGCCTTGCAGGAAAGCCATTCATCCTTTCACCCTTATGGA  1020

seq1  ATAGTAGGCATGTACAGGACTCGCTAAGTGTGCAAATCTTTGCTATTGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGCATGTACAGGACTCGCTAAGTGTGCAAATCTTTGCTATTGGT  1070

seq1  GATAAGGCGATTTCCCAAAGCATTGATATACTTAAGGAATTTCTAGTATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGCGATTTCCCAAAGCATTGATATACTTAAGGAATTTCTAGTATT  1120

seq1  TTCTAAGATGAAGGGGATCAGTGATGGAAGGGAGCTAGCTCTACATCAAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGATGAAGGGGATCAGTGATGGAAGGGAGCTAGCTCTACATCAAA  1170

seq1  GGCTTGAGCATTAGGGCATGGAATTC  1222
      ||||||||||||||||||||||||||
seq2  GGCTTGAGCATTAGGGCATGGAATTC  1196

seq1: chr19_17404747_17405877
seq2: B6Ng01-121K10.g_67_1191

seq1  GAATTCTTAAAACAGAGAAGGTAATTAAAGAGAGGACAAGGAGCATAAAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTC-TAAAACAGAGAAGGTAATTAAAGAGAGGACAAGGAGCATAAAG  49

seq1  TAGTATTTTGTAGGACAAGAGAAAAGTCTCCTCCGAAACAAGTTTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTTGTAGGACAAGAGAAAAGTCTCCTCCGAAACAAGTTTCTCAG  99

seq1  CATTTCAAAGAACATTCAGAGGCTTCCTGGTGTGGTGGGACAAACTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAAGAACATTCAGAGGCTTCCTGGTGTGGTGGGACAAACTTCTA  149

seq1  GGCCTTGAATGCCAATGATGTTTCCTCCAGTGTCCTGATGTGGCCAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAATGCCAATGATGTTTCCTCCAGTGTCCTGATGTGGCCAGGTG  199

seq1  AGATGCCAGTTTAACAGCGGGACAAGATATCACTGCACAGGACAGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAGTTTAACAGCGGGACAAGATATCACTGCACAGGACAGAGTGA  249

seq1  ACAAAAACAAACAGAAAAGAAAAGAGATTAAAAGAAAGGAAAAGAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAACAGAAAAGAAAAGAGATTAAAAGAAAGGAAAAGAGAAGA  299

seq1  AAAGAAAGACACACAACAAAGAATTAGTAAGTGCAATCGTTTACAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGACACACAACAAAGAATTAGTAAGTGCAATCGTTTACAGTGTC  349

seq1  TTCTCGGGCTCAAAACTATCCCCTTTGCTATGAGGCCAGATTTTCTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGGCTCAAAACTATCCCCTTTGCTATGAGGCCAGATTTTCTTACT  399

seq1  CAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGTCTGGTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGTCTGGTCTTC  449

seq1  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAACAAA  499

seq1  CAAAAAAGGAGGTTGACTTAATTAGAGAATAGAGATGGCTTAATAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGGAGGTTGACTTAATTAGAGAATAGAGATGGCTTAATAGAAGA  549

seq1  TCCATTGTTCTCACATTAAAGCCAGAAGCAGGGGTAAAAATAAGCAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTTCTCACATTAAAGCCAGAAGCAGGGGTAAAAATAAGCAGCAA  599

seq1  ACGTAA-TTCAAAGGTGTCTTAGAATTGCTATGAGAGACAACTGAGGCTT  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATTTCAAAGGTGTCTTAGAATTGCTATGAGAGACAACTGAGGCTT  649

seq1  GATGTGGTAGCACGAACCTCTCGTCCCAAAACTTAGGAGGCAGAGGC-AA  698
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATGTGGTAGCACGAACCTCTCGTCCCAAAACTTAGGAGGCAGAGGCAAA  699

seq1  GTCTGCTCTATGTAG-TAAGTTCCAGGGCAGCCAGGACTATCTCAACACC  747
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTCTGCTCTATGTAGTTAAGTTCCAGGGCAGCCAGGACTATCTCAACACC  749

seq1  TGGAAAATCTGACCTGCAGATAAACAGAACAAGGGCACAGGTGGAGACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATCTGACCTGCAGATAAACAGAACAAGGGCACAGGTGGAGACTG  799

seq1  TGGCCATA-ATGTCTCAACTGTCCACATGCCACGAATGCCAGGGCTCTGC  846
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATATATGTCTCAACTGTCCACATGCCACGAATGCCAGGGCTCTGC  849

seq1  TGG-TTTAAGAATAAACACCTCTATCACTATCATCACTAAGTTACTCCTG  895
      ||| ||||||||||||  | ||||||| | |||||||| |||||||||||
seq2  TGGTTTTAAGAATAAAACCTTCTATCATTTTCATCACT-AGTTACTCCTG  898

seq1  ATGACATCAACAGGCAGGAGACCCTTGCAAGGGTCAGATCCAGCCTGCCT  945
      ||||| ||||||||||||| ||||||||||||||   |||||||||||| 
seq2  ATGACCTCAACAGGCAGGAAACCCTTGCAAGGGTAGAATCCAGCCTGCC-  947

seq1  TTGGTTGATTCAGGGTGGTGACACACTTTGAGAAAAGGTTAAAAACACTT  995
      ||||||||||||||||||||||||||||||| ||||||||||||   |||
seq2  TTGGTTGATTCAGGGTGGTGACACACTTTGAAAAAAGGTTAAAA--CCTT  995

seq1  GAGAATCTGAAGACCCTGGAAGCAGGACAATTCTGCTGGGTATTCAACAT  1045
      || ||||||||||||||||||||||||||| || |||||||||   ||||
seq2  GA-AATCTGAAGACCCTGGAAGCAGGACAA-TCCGCTGGGTAT--CACAT  1041

seq1  GGTCTTAAAAGGCCTAGCTGAACTGGAGCCAGATTGGTGACTGTGTT-GA  1094
      |||||| ||||||||| ||||||||||| |||||| ||||||||||| ||
seq2  GGTCTT-AAAGGCCTA-CTGAACTGGAGACAGATT-GTGACTGTGTTGGA  1088

seq1  GTTGATCCCTAAATGTAGTTCTATTGTGAGA-ATCTGT  1131
      ||| |||||| ||||| ||||  |||||||| ||||||
seq2  GTTTATCCCT-AATGTTGTTCATTTGTGAGAGATCTGT  1125