BAC Information

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BAC

Clone NameB6Ng01-123B16
Chromosome19 (Build37)
Map Location 37,779,572 - 37,858,989
singlet/doubletdoublet
Overlap geneLOC668248, LOC668251
Upstream genePpp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1
Downstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123B16.bB6Ng01-123B16.g
ACCDH926363DH926364
length1,0641,033
definitionDH926363|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B16, 5' end.DH926364|Mus musculus domesticus DNA, BAC clone: B6Ng01-123B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,779,572 - 37,780,636)(37,857,942 - 37,858,989)
sequence
gaattctttggtgatgaaacctgtgaccttgggggcgggggtgggagcaa
gctcctggtcagcaggggcattcaaacgcaagctgggtggtgaagatggg
ttaaatggctttcccattctccttcacagctaaacagtggcaaagctccg
accgttcatcctgtattaattagttagttcctctgacaccttccttcctt
cctttgaaatacacattaataacagtcttgggagacaggttcccctcctc
actcttccttctagctctttccgcagtcctcgccttaggactaggtgaga
tggaggtacagaggcacctggtaccctgtgagctgtagcgttcaactgcg
atttctgggtctgcttcaacaccccacatctctcagctgtcttatggcga
ccattcagtccactatgcctcagatctttctcttctcctgtcttccatgc
actgacacgggactctgtccaccccaccattcccttctctctacctcctg
aaaagctacccaaggttaggagatgcttttcatcatgctaatcatgtaca
tttagtcaactcggatactttcttgctctcctccaggatatgctcacaca
tagtaggtgctctttaggagagagcgcctctgcaatactacttggtgttt
cttcgacttacatggtgccatgttttttctttgaaaagtgaaactttcat
ccttggaaaaatctcagtggccgcaagcttacacggtgtggtttaacagc
atgtcacagtcctgaaaccaatgctccatgggtccttggccaaacaagct
ttcctttctttgaagtagagtcaactccagttagaacccgggaacacagg
ggtggaggcttagctctgggttgtgcggtgggttttctgggtgagagtta
tcatgttgcaatatttgtaaccacatcacttcagtacaaaaaaaaatgcc
ccacattgtaaggatttccctcccctgccaaactctagtccattgaaggc
taagaaatcctctgttactgggtatagtagaatgcttcagactgttacct
tgaagtacctagta
gaattcctcctccatgagaagatagtcttttattctctctagctttagta
atttcaggtggcactgggtgtgagttgttaccagtggaagtttgctggca
gcagctggtcccttcgttttcttcttctttttccccactctagttgggac
aggaggttcatattcctttttcttgtccttgtcatccttcttgccacccc
caggaccatggccaccactctgactttgacccatcttccttcagtcgtcc
aagtcgccaccgccggaagtgcatccgtcaaagcgacccctcatcttcac
ctcttaaaactcacttaggctccatactctctccttttaacttctagaat
tccaaacacacatgtgtcattagatttactcaccattttctctggtttat
tattttttttcttcatggttttctgtctttcagtttctctatccatcatt
ctagagcttttccatttgcatatctttcatttcactcattttctcctcaa
ccatgtataatcttttacgaagcctatcaaatatattatttttaagttct
agattcactatttgactcttcttcaaatatgccatgtcctttactacagt
tcctatacattatgatttagattgagagtatcctctgaaagacttattta
ttgaaagcaaagcctggtccccggctggtggccctactgagaagtgactg
ggtctgagtttcaagagtaatctatgaatcagtccattggcagactcttt
atttgaaacatgattgggaggtcatgaaaactggtcatggagcctagctg
gagaaagtgggttgcttggagtttacccttgagagaatttcttattttga
tcctctctccctcctttcctctctcctcatgcccgtcacggaggagagac
cttttagtttctaccacatctttcctgccatgaggtcgctcacaatgttt
gagccttgggcagtgagtcagagacatgactgaaactggagctaaatctt
tttttccttagtcaggcagcttatttttgtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37779572_37780636
seq2: B6Ng01-123B16.b_47_1110

seq1  GAATTCTTTGGTGATGAAACCTGTGACCTTGGGGGCGGGGGTGGGAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTGATGAAACCTGTGACCTTGGGGGCGGGGGTGGGAGCAA  50

seq1  GCTCCTGGTCAGCAGGGGCATTCAAACGCAAGCTGGGTGGTGAAGATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGTCAGCAGGGGCATTCAAACGCAAGCTGGGTGGTGAAGATGGG  100

seq1  TTAAATGGCTTTCCCATTCTCCTTCACAGCTAAACAGTGGCAAAGCTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGCTTTCCCATTCTCCTTCACAGCTAAACAGTGGCAAAGCTCCG  150

seq1  ACCGTTCATCCTGTATTAATTAGTTAGTTCCTCTGACACCTTCCTTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTCATCCTGTATTAATTAGTTAGTTCCTCTGACACCTTCCTTCCTT  200

seq1  CCTTTGAAATACACATTAATAACAGTCTTGGGAGACAGGTTCCCCTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAATACACATTAATAACAGTCTTGGGAGACAGGTTCCCCTCCTC  250

seq1  ACTCTTCCTTCTAGCTCTTTCCGCAGTCCTCGCCTTAGGACTAGGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCCTTCTAGCTCTTTCCGCAGTCCTCGCCTTAGGACTAGGTGAGA  300

seq1  TGGAGGTACAGAGGCACCTGGTACCCTGTGAGCTGTAGCGTTCAACTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTACAGAGGCACCTGGTACCCTGTGAGCTGTAGCGTTCAACTGCG  350

seq1  ATTTCTGGGTCTGCTTCAACACCCCACATCTCTCAGCTGTCTTATGGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGGTCTGCTTCAACACCCCACATCTCTCAGCTGTCTTATGGCGA  400

seq1  CCATTCAGTCCACTATGCCTCAGATCTTTCTCTTCTCCTGTCTTCCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAGTCCACTATGCCTCAGATCTTTCTCTTCTCCTGTCTTCCATGC  450

seq1  ACTGACACGGGACTCTGTCCACCCCACCATTCCCTTCTCTCTACCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACGGGACTCTGTCCACCCCACCATTCCCTTCTCTCTACCTCCTG  500

seq1  AAAAGCTACCCAAGGTTAGGAGATGCTTTTCATCATGCTAATCATGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTACCCAAGGTTAGGAGATGCTTTTCATCATGCTAATCATGTACA  550

seq1  TTTAGTCAACTCGGATACTTTCTTGCTCTCCTCCAGGATATGCTCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCAACTCGGATACTTTCTTGCTCTCCTCCAGGATATGCTCACACA  600

seq1  TAGTAGGTGCTCTTTAGGAGAGAGCGCCTCTGCAATACTACTTGGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGTGCTCTTTAGGAGAGAGCGCCTCTGCAATACTACTTGGTGTTT  650

seq1  CTTCGACTTACATGGTGCCATGTTTTTTCTTTGAAAAGTGAAACTTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGACTTACATGGTGCCATGTTTTTTCTTTGAAAAGTGAAACTTTCAT  700

seq1  CCTTGGAAAAATCTCAGTGGCCGCAAGCTTACACGGTGTGGTTTAACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAAAATCTCAGTGGCCGCAAGCTTACACGGTGTGGTTTAACAGC  750

seq1  ATGTCACAGTCCTGAAACCAATGCTCCATGGGTCCTTGGCCAAACAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAGTCCTGAAACCAATGCTCCATGGGTCCTTGGCCAAACAAGCT  800

seq1  TTCCTTTCTTTGAAGTAGAGTCAACTCCAGTTAGAACCCCGGGAACACAG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCCTTTCTTTGAAGTAGAGTCAACTCCAGTTAGAA-CCCGGGAACACAG  849

seq1  GGGTGGAGGCTTAGCTCTGGGTTGTGCGGTGGGTTTTCTGGGTGAGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGGCTTAGCTCTGGGTTGTGCGGTGGGTTTTCTGGGTGAGAGTT  899

seq1  ATCATGTTGCAATATTTGTAACCACATCACTTCAGTAC-AAAAAAAATGC  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCATGTTGCAATATTTGTAACCACATCACTTCAGTACAAAAAAAAATGC  949

seq1  CCCACATTGTAA-GATTTCCCTCCCCTGCCAAACTCTTAGTCCATTGAGG  998
      |||||||||||| ||||||||||||||||||||||| ||||||||||| |
seq2  CCCACATTGTAAGGATTTCCCTCCCCTGCCAAACTC-TAGTCCATTGAAG  998

seq1  GCTTAGAAAT-CTCTGTTTACTTGGTAATAGTAG-ATGCTTCCAGACTGT  1046
      ||| |||||| ||||| ||||| ||| ||||||| |||||| ||||||||
seq2  GCTAAGAAATCCTCTG-TTACTGGGT-ATAGTAGAATGCTT-CAGACTGT  1045

seq1  TAACTTGAAGTTACTAGTA  1065
      || ||||||||  ||||||
seq2  TACCTTGAAGTACCTAGTA  1064

seq1: chr19_37857942_37858989
seq2: B6Ng01-123B16.g_68_1100 (reverse)

seq1  GGGACAAAA--TAGCTGACTGACTAAGGGAAAAAAAAGATTTTAGCTCAC  48
      |||||||||   ||||| ||||||||||  ||||||||| |||||||| |
seq2  GGGACAAAAATAAGCTGCCTGACTAAGG--AAAAAAAGA-TTTAGCTC-C  46

seq1  AGTTTCAGTCCATGGTCTCCTGACTCCACTGCCCCAGGGCTCATACATTG  98
      ||||||||| ||| |||| |||||| ||||| |||| |||||| ||||||
seq2  AGTTTCAGT-CAT-GTCT-CTGACT-CACTG-CCCAAGGCTCAAACATTG  91

seq1  TGAGGCGGAACCTCATGGCAGGAAAGATGTGGTAGAAAACTAAAAGGTCT  148
      ||| |||  |||||||||||||||||||||||||| ||||||||||||||
seq2  TGA-GCG--ACCTCATGGCAGGAAAGATGTGGTAG-AAACTAAAAGGTCT  137

seq1  CTCCT-CGTGACGGGCATGAGGGAGAGAGGGAAAGGAGGGGAGAGAGGGA  197
      ||||| |||||||||||||| ||||||| |||||||| |||||||| |||
seq2  CTCCTCCGTGACGGGCATGA-GGAGAGA-GGAAAGGA-GGGAGAGA-GGA  183

seq1  TCAAAATAAGAAATTCTCTTCAAGGGTAAACTCCAAGCAACCCACTTTCT  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAAAATAAGAAATTCTC-TCAAGGGTAAACTCCAAGCAACCCACTTTCT  232

seq1  CCAGCTAGGCTCCATGACCAGTTTTCATGACCTCCCAATCATGTTTCAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGGCTCCATGACCAGTTTTCATGACCTCCCAATCATGTTTCAAA  282

seq1  TTAAGAGTCTGCCAATGGACTGATTCATAGATTACTCTTGAAACTCAGAC  347
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTCTGCCAATGGACTGATTCATAGATTACTCTTGAAACTCAGAC  332

seq1  CCAGTCACTTCTCAGTAGGGCCACCAGCCGGGGACCAGGCTTTGCTTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACTTCTCAGTAGGGCCACCAGCCGGGGACCAGGCTTTGCTTTCA  382

seq1  ATAAATAAGTCTTTCAGAGGATACTCTCAATCTAAATCATAATGTATAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAGTCTTTCAGAGGATACTCTCAATCTAAATCATAATGTATAGG  432

seq1  AACTGTAGTAAAGGACATGGCATATTTGAAGAAGAGTCAAATAGTGAATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGTAAAGGACATGGCATATTTGAAGAAGAGTCAAATAGTGAATC  482

seq1  TAGAACTTAAAAATAATATATTTGATAGGCTTCGTAAAAGATTATACATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTAAAAATAATATATTTGATAGGCTTCGTAAAAGATTATACATG  532

seq1  GTTGAGGAGAAAATGAGTGAAATGAAAGATATGCAAATGGAAAAGCTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAGAAAATGAGTGAAATGAAAGATATGCAAATGGAAAAGCTCTA  582

seq1  GAATGATGGATAGAGAAACTGAAAGACAGAAAACCATGAAGAAAAAAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGGATAGAGAAACTGAAAGACAGAAAACCATGAAGAAAAAAAAT  632

seq1  AATAAACCAGAGAAAATGGTGAGTAAATCTAATGACACATGTGTGTTTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAGAGAAAATGGTGAGTAAATCTAATGACACATGTGTGTTTGG  682

seq1  AATTCTAGAAGTTAAAAGGAGAGAGTATGGAGCCTAAGTGAGTTTTAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGAAGTTAAAAGGAGAGAGTATGGAGCCTAAGTGAGTTTTAAGA  732

seq1  GGTGAAGATGAGGGGTCGCTTTGACGGATGCACTTCCGGCGGTGGCGACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGATGAGGGGTCGCTTTGACGGATGCACTTCCGGCGGTGGCGACT  782

seq1  TGGACGACTGAAGGAAGATGGGTCAAAGTCAGAGTGGTGGCCATGGTCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGACTGAAGGAAGATGGGTCAAAGTCAGAGTGGTGGCCATGGTCCT  832

seq1  GGGGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGGAATATGAACCTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGGAATATGAACCTCC  882

seq1  TGTCCCAACTAGAGTGGGGAAAAAGAAGAAGAAAACGAAGGGACCAGCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAACTAGAGTGGGGAAAAAGAAGAAGAAAACGAAGGGACCAGCTG  932

seq1  CTGCCAGCAAACTTCCACTGGTAACAACTCACACCCAGTGCCACCTGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCAAACTTCCACTGGTAACAACTCACACCCAGTGCCACCTGAAA  982

seq1  TTACTAAAGCTAGAGAGAATAAAAGACTATCTTCTCATGGAGGAGGAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAGCTAGAGAGAATAAAAGACTATCTTCTCATGGAGGAGGAATT  1032

seq1  C  1048
      |
seq2  C  1033