BAC Information

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BAC

Clone NameB6Ng01-123D23
Chromosome19 (Build37)
Map Location 31,229,807 - 31,338,798
singlet/doubletdoublet
Overlap genePrkg1, 8430431K14Rik
Upstream geneGldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995, Cstf2t
Downstream gene1810073H04Rik, Asah2, EG668042, Sgms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123D23.bB6Ng01-123D23.g
ACCDH926464DH926465
length1,107995
definitionDH926464|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D23, 5' end.DH926465|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,229,807 - 31,230,917)(31,337,800 - 31,338,798)
sequence
gaattcagaaagtcgaaagggaaaataaaatttttataagtttcaaggac
ttttatgtcttcagcggcccatcagctctcctccactaacttcacaatct
tgccgccacacatcctgtctatgttctcagggtctactgctggcctaaga
atttaaatgctatatgtctcctgataaaggcaagttgactgactgttctg
aaataagaagactcattttccactatcatttgaagttcagagattcactg
taggccctgggaagaggagtggtataaatagtcactgtggtattgaacaa
tgacaataatgattgaagggcctcgactttattaggtaattgctgtgttt
cagggatttttgctcttggtatattgctctatagatccagagactaagat
cagagaaatctaaacatttgaatagaaaattgggtacctttatcagacaa
atcaaatgctttactatggaaatatatgtttttttaaaataaaatatttt
gcataaaacctttcattcattttgatttagaatttaatagaacaaaaatg
tttatttctcatgtgtaaattacttattcttttaacagataaatgaaagg
taagacctaacttagtacatttaaaaatcttgacttctagaaagtttaga
tttaatattaatctttaaaaatcttttaattttattatgttctgtgtatg
ggtgttttgcctgagtgtgtctttgtagcacatgcatgcagtgcccaccg
agaccagaagagaacatcagatcccctgcagctgaaattataaacagttg
tgaggggccatgtgggtgctaggaattgaacccaggtcctctggaagagc
aaccagtgctataatcactgagctgcctctccagcttcctaaagttaacc
atttaactttttaaatgatatctcaatactaacttttaaatgatattctc
tgtttcagtagatcttcccaccctccaccatatattttttatataaccag
tagtatatccaaccgttctttcctttgtctacatatgtggcattatttta
agggacaaccctgacaaaagttctgatggaatatttgaagatggcacgtc
aaacccc
gaattcttgcttgtaaacttgctgtgcctgtacttcagaaatgcgctagc
ttactgagaaaggtcttcatcttgagtttgcttgcacaggctcatggcta
tggtgtttcagaggacaatcctcagtagcagacgtatagccaggtttgcc
tttgagaacactcaactttttgtaagtagtagttgtttttgtttgctttt
atgagacagagtctcgtgtagcccaagcttgctcaggtagctgaggataa
ccttctactctcaatcctttccttggatcatgaataacctagataaaagg
aaaactccaattaggacaaattctctctttatcctcctatttctgcaaac
ttagaggataactggaaagagggagagagcttcttaagtttgccccacac
agcattttctttcttctcatacaccatagcctgtttttctttgccaatgg
tgacattttatttctgttttaaaatataaaatgttaactgtttaaaactt
gtaatctccataaacactactgtgtcctggagtagggaacgagcaactca
ctattgggaagccatggtcttatgattacatgggtaggtcatgaaaaatg
atgggtgagattcaaatcctagcttatcatttggatgtgaccttttattt
ctccacctggatggtggtgatgtgacaggagacacacaatagagcttcac
taaaggattgattgaggcagttcaggatgcctgtttaaactagacctggc
aatagtcaatattcaagaatgagtacataatattatggatataaattcat
tacagaataggtaactaccacacaaggcacttttacgattacgttttact
ttttatgtacaaacagataaacatgctgttgcttagtaaatagttttttt
catgatggaattggaaaatcaatactcagttggctcttctgggacagacc
caggcaaaagttgtggatctacatgtgacatgacagctgtgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31229807_31230917
seq2: B6Ng01-123D23.b_46_1152

seq1  GAATTCAGAAAGTCGAAAGGGAAAATAAAATTTTTATAAGTTTCAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGTCGAAAGGGAAAATAAAATTTTTATAAGTTTCAAGGAC  50

seq1  TTTTATGTCTTCAGCGGCCCATCAGCTCTCCTCCACTAACTTCACAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTCTTCAGCGGCCCATCAGCTCTCCTCCACTAACTTCACAATCT  100

seq1  TGCCGCCACACATCCTGTCTATGTTCTCAGGGTCTACTGCTGGCCTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCCACACATCCTGTCTATGTTCTCAGGGTCTACTGCTGGCCTAAGA  150

seq1  ATTTAAATGCTATATGTCTCCTGATAAAGGCAAGTTGACTGACTGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGCTATATGTCTCCTGATAAAGGCAAGTTGACTGACTGTTCTG  200

seq1  AAATAAGAAGACTCATTTTCCACTATCATTTGAAGTTCAGAGATTCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAGACTCATTTTCCACTATCATTTGAAGTTCAGAGATTCACTG  250

seq1  TAGGCCCTGGGAAGAGGAGTGGTATAAATAGTCACTGTGGTATTGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCTGGGAAGAGGAGTGGTATAAATAGTCACTGTGGTATTGAACAA  300

seq1  TGACAATAATGATTGAAGGGCCTCGACTTTATTAGGTAATTGCTGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAATGATTGAAGGGCCTCGACTTTATTAGGTAATTGCTGTGTTT  350

seq1  CAGGGATTTTTGCTCTTGGTATATTGCTCTATAGATCCAGAGACTAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTTTTGCTCTTGGTATATTGCTCTATAGATCCAGAGACTAAGAT  400

seq1  CAGAGAAATCTAAACATTTGAATAGAAAATTGGGTACCTTTATCAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATCTAAACATTTGAATAGAAAATTGGGTACCTTTATCAGACAA  450

seq1  ATCAAATGCTTTACTATGGAAATATATGTTTTTTTAAAATAAAATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGCTTTACTATGGAAATATATGTTTTTTTAAAATAAAATATTTT  500

seq1  GCATAAAACCTTTCATTCATTTTGATTTAGAATTTAATAGAACAAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAACCTTTCATTCATTTTGATTTAGAATTTAATAGAACAAAAATG  550

seq1  TTTATTTCTCATGTGTAAATTACTTATTCTTTTAACAGATAAATGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTCATGTGTAAATTACTTATTCTTTTAACAGATAAATGAAAGG  600

seq1  TAAGACCTAACTTAGTACATTTAAAAATCTTGACTTCTAGAAAGTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTAACTTAGTACATTTAAAAATCTTGACTTCTAGAAAGTTTAGA  650

seq1  TTTAATATTAATCTTTAAAAATCTTTTAATTTTATTATGTTCTGTGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATTAATCTTTAAAAATCTTTTAATTTTATTATGTTCTGTGTATG  700

seq1  GGTGTTTTGCCTGAGTGTGTCTTTGTAGCACATGCATGCAGTGCCCACCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTGCCTGAGTGTGTCTTTGTAGCACATGCATGCAGTGCCCACCG  750

seq1  AGACCAGAAGAGAACATCAGATCCCCTGCAGCTGAAATTATAAACAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAAGAGAACATCAGATCCCCTGCAGCTGAAATTATAAACAGTTG  800

seq1  TGAGGGGCCATGTGGGTGCTAGGAATTGAACCCAGGTCCTCTGGAAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCCATGTGGGTGCTAGGAATTGAACCCAGGTCCTCTGGAAGAGC  850

seq1  AACCAGTGCTATTAATCACTGAGCTGCCTCTCCAGC-TCCTAAAGTTAAC  899
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  AACCAGTGCTA-TAATCACTGAGCTGCCTCTCCAGCTTCCTAAAGTTAAC  899

seq1  CATTTAAC-TTTTAAATGATATTCTCAATACTAACTTTTAAATGATATTC  948
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  CATTTAACTTTTTAAATGATA-TCTCAATACTAACTTTTAAATGATATTC  948

seq1  TCTGTTTCAGTAAGATCTTCCCACCCTCCACCATATATTTTCTATATAAC  998
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TCTGTTTCAGT-AGATCTTCCCACCCTCCACCATATATTTTTTATATAAC  997

seq1  CAGTAGTATATCCAACCGTTCTTTCTTTGTTCTACAGTATGTGGCAATTA  1048
      ||||||||||||||||||||||||| ||  |||||| |||||||| ||||
seq2  CAGTAGTATATCCAACCGTTCTTTCCTTTGTCTACA-TATGTGGC-ATTA  1045

seq1  TTTTAAAGGAACAAACACTGACAAAAG-TCTGATGG-ATATTTAGAAGAT  1096
      |||||| |||   ||| |||||||||| |||||||| |||||| ||||||
seq2  TTTTAAGGGA--CAACCCTGACAAAAGTTCTGATGGAATATTT-GAAGAT  1092

seq1  GGCACGTCAAACCCC  1111
      |||||||||||||||
seq2  GGCACGTCAAACCCC  1107

seq1: chr19_31337800_31338798
seq2: B6Ng01-123D23.g_68_1062 (reverse)

seq1  CTTTCACAGCTTGTCATTGTCACATGGTAGATCCAC-ACTTTTGCCTGGG  49
      |||||||||| ||||| |||||||| |||||||||| |||||||||||||
seq2  CTTTCACAGC-TGTCA-TGTCACAT-GTAGATCCACAACTTTTGCCTGGG  47

seq1  TTCTGT-CCAGAAGAGCCAACTGGAGTTATTGATTTTTCAATTCCATCAT  98
       ||||| ||||||||||||||| ||| |||||||||| ||||||||||||
seq2  -TCTGTCCCAGAAGAGCCAACT-GAG-TATTGATTTTCCAATTCCATCAT  94

seq1  GAAAAAAAACTATTTACTAAGCAACAGCATGTTTATCTGTTTGTACATAA  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAAAAAACTATTTACTAAGCAACAGCATGTTTATCTGTTTGTACATAA  143

seq1  AAAGTAAAACGTAATCGTAAAAGTGCCTTGTGTGGTAGTTACCTATTCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAACGTAATCGTAAAAGTGCCTTGTGTGGTAGTTACCTATTCTG  193

seq1  TAATGAATTTATATCAATAATATTATGTACTCATTCTTGAATATTGACTA  248
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATGAATTTATATCCATAATATTATGTACTCATTCTTGAATATTGACTA  243

seq1  TTGCCAGGTCTAGTTTAAACAGGCATCCTGAACTGCCTCAATCAATCC-T  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTGCCAGGTCTAGTTTAAACAGGCATCCTGAACTGCCTCAATCAATCCTT  293

seq1  TAGTGAAGCTCTATTGTGTGTCTCCTGTCACATCACCACCATCCAGGTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGCTCTATTGTGTGTCTCCTGTCACATCACCACCATCCAGGTGG  343

seq1  AGAAATAAAAGGTCACATCCAAATGATAAGCTAGGATTTGAATCTCACCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAAAGGTCACATCCAAATGATAAGCTAGGATTTGAATCTCACCC  393

seq1  ATCATTTTTCATGACCTACCCATGTAATCATAAGACCATGGCTTCCCAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTCATGACCTACCCATGTAATCATAAGACCATGGCTTCCCAAT  443

seq1  AGTGAGTTGCTCGTTCCCTACTCCAGGACACAGTAGTGTTTATGGAGATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTGCTCGTTCCCTACTCCAGGACACAGTAGTGTTTATGGAGATT  493

seq1  ACAAGTTTTAAACAGTTAACATTTTATATTTTAAAACAGAAATAAAATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTTAAACAGTTAACATTTTATATTTTAAAACAGAAATAAAATGT  543

seq1  CACCATTGGCAAAGAAAAACAGGCTATGGTGTATGAGAAGAAAGAAAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGGCAAAGAAAAACAGGCTATGGTGTATGAGAAGAAAGAAAATG  593

seq1  CTGTGTGGGGCAAACTTAAGAAGCTCTCTCCCTCTTTCCAGTTATCCTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGGGCAAACTTAAGAAGCTCTCTCCCTCTTTCCAGTTATCCTCT  643

seq1  AAGTTTGCAGAAATAGGAGGATAAAGAGAGAATTTGTCCTAATTGGAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCAGAAATAGGAGGATAAAGAGAGAATTTGTCCTAATTGGAGTT  693

seq1  TTCCTTTTATCTAGGTTATTCATGATCCAAGGAAAGGATTGAGAGTAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTATCTAGGTTATTCATGATCCAAGGAAAGGATTGAGAGTAGAA  743

seq1  GGTTATCCTCAGCTACCTGAGCAAGCTTGGGCTACACGAGACTCTGTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCCTCAGCTACCTGAGCAAGCTTGGGCTACACGAGACTCTGTCTC  793

seq1  ATAAAAGCAAACAAAAACAACTACTACTTACAAAAAGTTGAGTGTTCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCAAACAAAAACAACTACTACTTACAAAAAGTTGAGTGTTCTCA  843

seq1  AAGGCAAACCTGGCTATACGTCTGCTACTGAGGATTGTCCTCTGAAACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAACCTGGCTATACGTCTGCTACTGAGGATTGTCCTCTGAAACAC  893

seq1  CATAGCCATGAGCCTGTGCAAGCAAACTCAAGATGAAGACCTTTCTCAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCATGAGCCTGTGCAAGCAAACTCAAGATGAAGACCTTTCTCAGT  943

seq1  AAGCTAGCGCATTTCTGAAGTACAGGCACAGCAAGTTTACAAGCAAGAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCGCATTTCTGAAGTACAGGCACAGCAAGTTTACAAGCAAGAAT  993

seq1  TC  999
      ||
seq2  TC  995