BAC Information

Click to search

BAC

Clone NameB6Ng01-123E21
Chromosome19 (Build37)
Map Location 24,176,469 - 24,322,618
singlet/doubletdoublet
Overlap geneTjp2
Upstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik
Downstream geneFxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E21.bB6Ng01-123E21.g
ACCDH926505DH926506
length1,083460
definitionDH926505|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E21, 5' end.DH926506|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,321,531 - 24,322,618)(24,176,469 - 24,176,934)
sequence
gaattctgtcacctccagtctctctgcaggacttcaggactcccagactg
acagggaagggagcaaaggaggaagtggatgtctgttaagaaggtgatct
gagtctatggtggtctgacctatgtcatatcttagtcctggttctgcaag
acttctggagattatgtcttttctgtccttgctccttgtaggaggaatat
ggggctatgcttttcagttacatagccttattaactactatacgagacgg
ttatgttcagagaaatgaagatgtcatgctggctgctaagtttggatctc
tgccatgataacaagccacagccagtttggaggattttttaaaattctca
ttattcatggagtcattttgcttatgacaaaatatctttattacttctta
tctgagactggaatctggagagatcatgttagcatttattttcctttcta
ttttgaaaaacggcatgtgcagggttttgttgggttttgtttttgttttt
attttttccccccgaacatgaaaaaaatttagggcctgggaaaataataa
gagcaggtttgtggttttaaaagataaccttgataactttggggtcagca
ttcaggacggactggattagtaaggaagaaccaggcatggaaagaataat
ttcagacctaactttcctgctctttattcattcattcattcattcatcca
tccatccatccatccattcattcaaaaactctttaggaatgtcggtaata
tctcaggtacagttgtggacatcatgacacaacaataaataaagcaattg
ccatcttggggctaactcttcactggggaaatatcatcaacagggtagga
atggtgccaatagcttgtcaatatccagcattgatactgggaagtgatgg
ggagaacagctaaacaaagagatggagtatgctgggtacattgtagtaaa
tggaattgacaggaaatttaccatagtaaccaccttttagagtacaattc
ggtagcatggagttactgacactagtgtgtggctgtcatcgccaacatcc
tctgtaacttttcaggggcactttctgataggg
acgttgattgtggctacagacataagccagaaggtcagcatcgattctca
gagccaccttgaatctagaagctattcacatcatctctatttataccgta
tttgaagaaaaacttgccaagttcggaagtatatatgttccttaaacata
aaacctttttggtcaaatgcaactaaagctgttttagtttacattacaga
ctgtatgagcttattttcacgataagtatttcttcaaaagagctacagtg
tgttaccagtgtgtgtgtgtgtgcgcgcacacgtggttttcttttattta
ttttgcaatgtcaaggacagaattcaggtcatcacaaaagccatatatgc
cttccaccactgagtcatagcccctgtccatcaaaaaagaaaggaagaag
aaggaaggaatgaatgaaggaaggaaggaaggaaggaaggaaggaaggaa
gagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24321531_24322618
seq2: B6Ng01-123E21.b_37_1119 (reverse)

seq1  CCCTATCAGAAAGTGCCACCTGAAAAAGTTACAGAGATGGTTGGCGATGA  50
      ||||||||||||||||| |||| |||||||||||||   |||||||||||
seq2  CCCTATCAGAAAGTGCC-CCTG-AAAAGTTACAGAGGATGTTGGCGATGA  48

seq1  CAGCCACACACTAGTGTCAGTAAACTCAATGCTACCGAATTGTACTCTTA  100
      ||||||||||||||||||||| ||||| ||||||||||||||||||| ||
seq2  CAGCCACACACTAGTGTCAGT-AACTCCATGCTACCGAATTGTACTC-TA  96

seq1  AAAGGTGGTTACTATGGTAAATTTCCTGTCAATTCCATTTACTACAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGTTACTATGGTAAATTTCCTGTCAATTCCATTTACTACAATGT  146

seq1  ACCCAGCATACTCCATCTCTTTTGTTTAGCTGTTCTCCCCATCACTTCCC  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCCAGCATACTCCATCTC-TTTGTTTAGCTGTTCTCCCCATCACTTCCC  195

seq1  AGTATCAATGCTGGATATTGACAAGCTATTGGCACCATTCCTACCCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAATGCTGGATATTGACAAGCTATTGGCACCATTCCTACCCTGTT  245

seq1  GATGATATTTCCCCAGTGAAGAGTTAGCCCCAAGATGGCAATTGCTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATATTTCCCCAGTGAAGAGTTAGCCCCAAGATGGCAATTGCTTTAT  295

seq1  TTATTGTTGTGTCATGATGTCCACAACTGTACCTGAGATATTACCGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGTGTCATGATGTCCACAACTGTACCTGAGATATTACCGACAT  345

seq1  TCCTAAAGAGTTTTTGAATGAATGGATGGATGGATGGATGGATGAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGAGTTTTTGAATGAATGGATGGATGGATGGATGGATGAATGAA  395

seq1  TGAATGAATGAATAAAGAGCAGGAAAGTTAGGTCTGAAATTATTCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAATAAAGAGCAGGAAAGTTAGGTCTGAAATTATTCTTTCC  445

seq1  ATGCCTGGTTCTTCCTTACTAATCCAGTCCGTCCTGAATGCTGACCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGTTCTTCCTTACTAATCCAGTCCGTCCTGAATGCTGACCCCAA  495

seq1  AGTTATCAAGGTTATCTTTTAAAACCACAAACCTGCTCTTATTATTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCAAGGTTATCTTTTAAAACCACAAACCTGCTCTTATTATTTTCC  545

seq1  CAGGCCCTAAATTTTTTTCATGTTCGGGGGGAAAAAATAAAAACAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTAAATTTTTTTCATGTTCGGGGGGAAAAAATAAAAACAAAAAC  595

seq1  AAAACCCAACAAAACCCTGCACATGCCGTTTTTCAAAATAGAAAGGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAACAAAACCCTGCACATGCCGTTTTTCAAAATAGAAAGGAAAA  645

seq1  TAAATGCTAACATGATCTCTCCAGATTCCAGTCTCAGATAAGAAGTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTAACATGATCTCTCCAGATTCCAGTCTCAGATAAGAAGTAATA  695

seq1  AAGATATTTTGTCATAAGCAAAATGACTCCATGAATAATGAGAATTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTTGTCATAAGCAAAATGACTCCATGAATAATGAGAATTTTAA  745

seq1  AAAATCCTCCAAACTGGCTGTGGCTTGTTATCATGGCAGAGATCCAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTCCAAACTGGCTGTGGCTTGTTATCATGGCAGAGATCCAAACT  795

seq1  TAGCAGCCAGCATGACATCTTCATTTCTCTGAACATAACCGTCTCGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCCAGCATGACATCTTCATTTCTCTGAACATAACCGTCTCGTATA  845

seq1  GTAGTTAATAAGGCTATGTAACTGAAAAGCATAGCCCCATATTCCTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAATAAGGCTATGTAACTGAAAAGCATAGCCCCATATTCCTCCTA  895

seq1  CAAGGAGCAAGGACAGAAAAGACATAATCTCCAGAAGTCTTGCAGAACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCAAGGACAGAAAAGACATAATCTCCAGAAGTCTTGCAGAACCA  945

seq1  GGACTAAGATATGACATAGGTCAGACCACCATAGACTCAGATCACCTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAGATATGACATAGGTCAGACCACCATAGACTCAGATCACCTTCT  995

seq1  TAACAGACATCCACTTCCTCCTTTGCTCCCTTCCCTGTCAGTCTGGGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACATCCACTTCCTCCTTTGCTCCCTTCCCTGTCAGTCTGGGAGT  1045

seq1  CCTGAAGTCCTGCAGAGAGACTGGAGGTGACAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTCCTGCAGAGAGACTGGAGGTGACAGAATTC  1083

seq1: chr19_24176469_24176934
seq2: B6Ng01-123E21.g_64_529

seq1  GAATTCACGTTGATTGTGGCTACAGACATAAGCCAGAAGGTCAGCATCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTTGATTGTGGCTACAGACATAAGCCAGAAGGTCAGCATCGA  50

seq1  TTCTCAGAGCCACCTTGAATCTAGAAGCTATTCACATCATCTCTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAGCCACCTTGAATCTAGAAGCTATTCACATCATCTCTATTTAT  100

seq1  ACCGTATTTGAAGAAAAACTTGCCAAGTTCGGAAGTATATATGTTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTATTTGAAGAAAAACTTGCCAAGTTCGGAAGTATATATGTTCCTTA  150

seq1  AACATAAAACCTTTTTGGTCAAATGCAACTAAAGCTGTTTTAGTTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAACCTTTTTGGTCAAATGCAACTAAAGCTGTTTTAGTTTACAT  200

seq1  TACAGACTGTATGAGCTTATTTTCACGATAAGTATTTCTTCAAAAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTGTATGAGCTTATTTTCACGATAAGTATTTCTTCAAAAGAGCT  250

seq1  ACAGTGTGTTACCAGTGTGTGTGTGTGTGCGCGCACACGTGGTTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGTTACCAGTGTGTGTGTGTGTGCGCGCACACGTGGTTTTCTTT  300

seq1  TATTTATTTTGCAATGTCAAGGACAGAATTCAGGTCATCACAAAAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTGCAATGTCAAGGACAGAATTCAGGTCATCACAAAAGCCAT  350

seq1  ATATGCCTTCCACCACTGAGTCATAGCCCCTGTCCATCAAAAAAGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTTCCACCACTGAGTCATAGCCCCTGTCCATCAAAAAAGAAAGG  400

seq1  AAGAAGAAGGAAGGAATGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGGAAGGAATGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  450

seq1  AAGGAAGAGGGAGGGA  466
      ||||||||||||||||
seq2  AAGGAAGAGGGAGGGA  466