BAC Information

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BAC

Clone NameB6Ng01-125G23
Chromosome19 (Build37)
Map Location 43,546,142 - 43,716,158
singlet/doubletdoublet
Overlap geneCnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245
Upstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
Downstream geneSlc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125G23.bB6Ng01-125G23.g
ACCDH928073DH928074
length739180
definitionDH928073|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G23, 5' end.DH928074|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,546,142 - 43,546,876)(43,715,979 - 43,716,158)
sequence
gaattcactgcaaggggcttctgaagtcggagcttgtgtttctgtaaagg
aaatctaggcagaattaacacttccctgtgatcatgtgagtccatttgtc
cgtgcccacaaaagtccttggggtctgagggaacctggaagacctggaag
tgcccatcccagcctcagtaagttccttaccctccttctctctccagggg
aaagtggaagtggaggttggtaaggaaggccttcgctttgagaacggagc
ctttacctactatggtgttccagccatcatgaccagcgcttgctcaggta
ttctagttcttaagccgggagtttatcagggaagcagtggggcccaccaa
gaaagatctaggcggaagtcacgactcttgtgttgactcctgttaaacac
cttcaaaataagctgtttcgcttccttggctcgggtttccttctgtgcaa
agacggcataaaaataacttcagattttgtttggctttaagaggaagaaa
actgaggtgggggtggaaaaggtaatcttgtagcaagtgctggggtggag
acccggcttttccgaaagaaaggacacgttgtttcacgctcttccctact
accctccttcctgcctgattcctgcagggctaattggtgctggggtggag
tagaagtggagatttccatgagacatttctgtttttctgaattacttctg
aaaacccactgcaacccttctgtccttagataatgacgt
ccaacccagtgtgtatctgacagtgctcacactatctgctaacaccgttg
gaacactgaaaacgttaagtttggctggaagaggaacttagtggtaggct
ttttgcgtagcatacctgaggctctgagttcaattcccagcacaccagaa
aagaaggaagtgggagggaggaagggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43546142_43546876
seq2: B6Ng01-125G23.b_49_787

seq1  GAATTCACTGCAAGGGGCTTCTGAAGTCGGAGCTTGTGTTTCTGTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCAAGGGGCTTCTGAAGTCGGAGCTTGTGTTTCTGTAAAGG  50

seq1  AAATCTAGGCAGAATTAACACTTCCCTGTGATCATGTGAGTCCATTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGGCAGAATTAACACTTCCCTGTGATCATGTGAGTCCATTTGTC  100

seq1  CGTGCCCACAAAAGTCCTTGGGGTCTGAGGGAACCTGGAAGACCTGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCCACAAAAGTCCTTGGGGTCTGAGGGAACCTGGAAGACCTGGAAG  150

seq1  TGCCCATCCCAGCCTCAGTAAGTTCCTTACCCTCCTTCTCTCTCCAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCCCAGCCTCAGTAAGTTCCTTACCCTCCTTCTCTCTCCAGGGG  200

seq1  AAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAGTGGAGGTTGGTAAGGAAGGCCTTCGCTTTGAGAACGGAGC  250

seq1  CTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTACTATGGTGTTCCAGCCATCATGACCAGCGCTTGCTCAGGTA  300

seq1  TTCTAGTTCTTAAGCCGGGAGTTTATCAGGGAAGCAGTGGGGCCCACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCTTAAGCCGGGAGTTTATCAGGGAAGCAGTGGGGCCCACCAA  350

seq1  GAAAGATCTAGGCGGAAGTCACGACTCTTGTGTTGACTCCTGTTAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTAGGCGGAAGTCACGACTCTTGTGTTGACTCCTGTTAAACAC  400

seq1  CTTCAAAATAAGCTGTTTCGCTTCCTTGGCTCGGGTTTCCTTCTGTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATAAGCTGTTTCGCTTCCTTGGCTCGGGTTTCCTTCTGTGCAA  450

seq1  AGACGGCATAAAAATAACTTCAGATTTTGTTTGGCTTTAAGAGGAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCATAAAAATAACTTCAGATTTTGTTTGGCTTTAAGAGGAAGAAA  500

seq1  ACTGAGGTGGGGGTGGAAAAGGTAATCTTGTAGCAAGTGCTGGGGTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTGGGGGTGGAAAAGGTAATCTTGTAGCAAGTGCTGGGGTGGAG  550

seq1  ACCCGGCTTTTCCGAAAGAAAGGACACGTTGTTTCACGCTCTTCCCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGCTTTTCCGAAAGAAAGGACACGTTGTTTCACGCTCTTCCCTACT  600

seq1  ACCCTCCTTCCTGCCTGATTCCTGCAGGGCTAATTGGTGCTGGGGTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTTCCTGCCTGATTCCTGCAGGGCTAATTGGTGCTGGGGTGGAG  650

seq1  TAGAAGTGGAGATTTCCATGAGACA-TTCTG-TTTTCTGAATTACTTCTG  698
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  TAGAAGTGGAGATTTCCATGAGACATTTCTGTTTTTCTGAATTACTTCTG  700

seq1  -AAACCCACTGC-ACCCTTCTGTCCTTAGATAATGACGT  735
       ||||||||||| ||||||||||||||||||||||||||
seq2  AAAACCCACTGCAACCCTTCTGTCCTTAGATAATGACGT  739

seq1: chr19_43715979_43716158
seq2: B6Ng01-125G23.g_71_250 (reverse)

seq1  TCTTCCCTTCCTCCCTCCCACTTCCTTCTTTTCTGGTGTGCTGGGAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTCCTCCCTCCCACTTCCTTCTTTTCTGGTGTGCTGGGAATTG  50

seq1  AACTCAGAGCCTCAGGTATGCTACGCAAAAAGCCTACCACTAAGTTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGCCTCAGGTATGCTACGCAAAAAGCCTACCACTAAGTTCCTC  100

seq1  TTCCAGCCAAACTTAACGTTTTCAGTGTTCCAACGGTGTTAGCAGATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCAAACTTAACGTTTTCAGTGTTCCAACGGTGTTAGCAGATAGT  150

seq1  GTGAGCACTGTCAGATACACACTGGGTTGG  180
      ||||||||||||||||||||||||||||||
seq2  GTGAGCACTGTCAGATACACACTGGGTTGG  180