BAC Information

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BAC

Clone NameB6Ng01-125P10
Chromosome19 (Build37)
Map Location 11,584,201 - 11,585,087
singlet/doubletsinglet
Overlap geneEG666926
Upstream gene0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c
Downstream geneMs4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125P10.bB6Ng01-125P10.g
ACCDH928454DH928455
length1,1491,065
definitionDH928454|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P10, 5' end.DH928455|Mus musculus domesticus DNA, BAC clone: B6Ng01-125P10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacccagttatttgggaaatggaaatggccacaaataatgcag
tatctcttcagtaccaggaaccagcattgaggaggagggtggaagtctag
gttacccacatcaatagattcactacagggaaaacaaaacaataaaagca
gggattagaaattggtgcagactgaagtgcaatatccctacactgggtta
ataatgggattaggcacagagaaattgaagcccgactctttgttttgaat
tctgcatataaaggttgatgatgaaatacatttctaaaatccttcttgat
acttcaaagatggaaaaaaaaaaaaaaagaaagaaagaaatcggtgcaga
ggcctaaaggccaccatccctgggctttaatgctagcctcgacccaacag
tttagtgattcaacagccttggtgtaaaaatgtaatacatttcatatcag
atgaacaggttacttgaagctaatgaagcctgattgcttctatttaaaaa
ttatatatatatatatatatatatatatatatatatatatattacacaca
catacacacatatacacatatatacacaagtgcagtgcccacagattcgt
aagagggtgacagatccccctggagctggagctaacggtttgtttagaac
tgtcagatatgggcgttaagaaccaaactcaaagttcagagcagagactg
aaggaatgaccatccagagacggtcccatctggggatccatcccataaac
aaccaccaaacccagacactatttgcagatgccaacaagattttgctgac
aggagcctgatatagctgtctcctgagaggctctgtcagtacctgactaa
tacagaagtggatgctcatgggccatctttttggacagaccacaggttca
caatgaaggagctagagtaagttacccaagggggctgaaggggttgcagc
ccataggagaacaacaataatgactaatcagtaatctcagagctccatgg
gactaaaacaccatcaaagaaacactgggtgggactcatggcttagctgc
atattgaatcaaaggtggcccagacagtaataatgggaaggaagtccttg
tcttgaagttcttgcccaattaatagggaattgcccagatacagataca
gaattctcacctgaggaataccgaatggcagagaagcaccggaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagttcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacacttctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaagatcctgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcctctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaataatatgtactcactgataagtggatattagcccagaaac
ttagtatagtgagatataaggtacaatttgcaaaacacatgaaactgaag
aagaacgaagaccaaagtgtggatactttgcccctctgagtttcctaatt
tcattaataataaagtttaaagctagactcagaaggaaacccgaaacaag
agaaagactgaaaaagcccataaagtctaagaacacatatttaggagtgc
caattcacagctctgagttcagaggtcacccaattctagatccttgtgtt
gcagagcaaaggactgtaccattcactcatgttagaaatagagagagttt
atcagaaagaaagcattctaagaatggaagtggactagtgagctgtagaa
agagcctgaaggcacccagccacagagtgagcacggtttatacgaccatt
atagactcggactttttgtttgcatctggtgactactgccccacctccct
cagaatgctgtctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11584201_11585087
seq2: B6Ng01-125P10.g_255_1131

seq1  CCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT  50

seq1  GGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATCCTGCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATCCTGCAATA  100

seq1  CCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACAC  150

seq1  ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA  200

seq1  AAGAACCCAGATGCCTCTCAACAGAGGAATGGATACAGAAAATGTGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCAGATGCCTCTCAACAGAGGAATGGATACAGAAAATGTGGTAC  250

seq1  ATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA  300

seq1  ATTCCTAGCCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGCCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAA  350

seq1  CACAATCACAAAAGAACTCAAATAATATGTACTCACTGATAAGTGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCACAAAAGAACTCAAATAATATGTACTCACTGATAAGTGGATAT  400

seq1  TAGCCCAGAAACTTAGTATAGTGAGATATAAGGTACAATTTGCAAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGAAACTTAGTATAGTGAGATATAAGGTACAATTTGCAAAACAC  450

seq1  ATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGATACTTTGCCCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGATACTTTGCCCCTCTG  500

seq1  AGTTTCCTAATTTCATTAATAATAAAGTTTAAAGCTAGACTCAGAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTAATTTCATTAATAATAAAGTTTAAAGCTAGACTCAGAAGGAA  550

seq1  ACCCGAAACAAGAGAAAGACTGAAAAAGCCCATAAAGTCTAAGAACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGAAACAAGAGAAAGACTGAAAAAGCCCATAAAGTCTAAGAACACAT  600

seq1  ATTTAGGAGTGCCAATTCACAGCTCTGAGTTCAGAGGTCACCCAATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAGTGCCAATTCACAGCTCTGAGTTCAGAGGTCACCCAATTCTA  650

seq1  GATCCTTGTGTTGCAGAGCAAAGGACTGTACCATTCACTCATGTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTGTGTTGCAGAGCAAAGGACTGTACCATTCACTCATGTTAGAAA  700

seq1  TAGAGAGAGTTTATCAAGAAAAGAAAGCATTCCTAAGAATGGAAGTGGAC  750
      ||||||||||||||||   |||||||||||| ||||||||||||||||||
seq2  TAGAGAGAGTTTATCA--GAAAGAAAGCATT-CTAAGAATGGAAGTGGAC  747

seq1  TAGTGAGCTGTAGAAAGAGCCTGAAGGGCACCCAGCCACAGAGTGAAGCA  800
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  TAGTGAGCTGTAGAAAGAGCCTGAA-GGCACCCAGCCACAGAGTG-AGCA  795

seq1  CCGTTTATACGACCATTATAGACTCGGACTTTTTGTTTGCATCTGGTGGA  850
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGGTTTATACGACCATTATAGACTCGGACTTTTTGTTTGCATCTGGT-GA  844

seq1  CTCACTGCCCCACAACCTCACTCAGTATGCTGTCTCC  887
      || ||||||||   ||||| ||||| |||||||||||
seq2  CT-ACTGCCCC---ACCTCCCTCAGAATGCTGTCTCC  877