BAC Information

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BAC

Clone NameB6Ng01-127I03
Chromosome19 (Build37)
Map Location 22,628,426 - 22,777,661
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, EG433230
Downstream geneKlf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127I03.bB6Ng01-127I03.g
ACCDH929607DH929608
length1,131950
definitionDH929607|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I03, 5' end.DH929608|Mus musculus domesticus DNA, BAC clone: B6Ng01-127I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,628,426 - 22,629,588)(22,776,703 - 22,777,661)
sequence
gaattcaaagtctggagctgttccctgtctgtctgtcggtgattcttatt
taaatagcaaaccctgtttaattggctccaaaggtaatcaggctagacac
atttggggtgctaaccgacaaaggagaggcaaataaattacaaagaaaaa
atctgaatttctctagatcccaataaaagtaagaaaaaatttcattctgc
tgtgtgtacatgctttaaaacgtatctttcactcgaaaccatatgctggg
ggaattacttttatatctggggatgaacctgaacccaacattggtatttt
ctttccaaatcttagtagtccttcaaaatggctaacgaaaaaacaacaac
aaacaaacaaacaaacaaacaaaaagaatgactaaactgaggtggaattc
aacatttcagcctgaatattcagcccagccaaatcttcaggctctgaatt
aataaactcattccgtctgacttgattttagggtcacattgagccaaaac
caacttccggggcttgggagccttgctttgaacagaaggctgtttgcttg
ttcccagtgggaatacattatgctgagtgatggcttcctgtttgtcctgg
aggggcctccctggcctgaaagaagtcacaatttgggtcagctctctctg
caggggccattcctgacagctttcttgggataaatgagatctgaaacatc
gggctttcagtatatgaaaaggtcttggcacaaagcccccgtctctctac
agagggctctgactttgaaaatgccctgcatgctgcagtttttccccagc
ccacagggactcctgctggggcatcttgctaggaggtccacgtgctcccg
tgctccccacgtggatagattagatgtctgtgggaggactgccagaaact
gttgcaccttctgaatgacaatgcaagtgccgaaggtaaaatagcctgga
tcacacatgagtcatggctgtattaccaatcttctgtagggaacaaaaaa
gccttaaatgccaccatgctgaaaataacgggcataagcacacgatcgat
ccttgaattgacttgtgcagccagtgtctcgaagctctttctggagagct
attgctagtcaggtctttagcttcccctcag
gaattcccaggtcaaatttgcaggatgcaaagagagatcatttctaaacc
tcagactcaaacctggaaattctcagggacagcctccccacaaagcaact
accctactgtgttttcccctccctcaaagcccagagagctagacactttc
ctttgtgggctcaatagttaaagctttcagtgtcaagcaagggctaagga
taattgtcttaattatatgaagactgtactaagtgactccacatgatcca
atagacagagtaaatggcagaggagagctgggagagatttatgtggctgg
cttgagaggttttaactgtatgcccttaattaggtttagtcttacctggc
ccacaagccagttctgcattaattagaaaagatgatttgtaaacaagtaa
gcctatactctgctcactttgtaaatcatgtggaagccctcaatagatag
agttgccaaaataacccctcacggtatctgctgactgagccattttgctg
tgtaagttatgaaatgtccctatgagtgagctagtcttctgagagtccag
ggtggtttagtgcttgtcatctggtaggatgcaatttgggcacaggaaga
aagttgggctccttcctctctgtcagcttggactggttccttcctgtgtt
atagtttctctctacaaagttaattttcctggggctggttaggcttggac
actgagttctgaacaccacaaagctcttgaaagagctcggcaaatgggtc
taataatcgaggatgtaattttacagaaacttctccccgctcgaagcttt
caagcttaattaacctcattaaatattagtgattaaaaatcttgctacaa
aattataaacccttttaagaaggtagaggcacatcataattggctttctt
ttgatcatcacaaattatttcaataaccgtgactcatcttttctggtaca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22628426_22629588
seq2: B6Ng01-127I03.b_49_1179

seq1  GAATTCAAAGTCTGGAGCTGTTCCCTGTCTGTCTGTCGGTGATTCTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCTGGAGCTGTTCCCTGTCTGTCTGTCGGTGATTCTTATT  50

seq1  TAAATAGCAAACCCTGTTTAATTGGCTCCAAAGGTAATCAGGCTAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCAAACCCTGTTTAATTGGCTCCAAAGGTAATCAGGCTAGACAC  100

seq1  ATTTGGGGTGCTAACCGACAAAGGAGAGGCAAATAAATTACAAAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGTGCTAACCGACAAAGGAGAGGCAAATAAATTACAAAGAAAAA  150

seq1  ATCTGAATTTCTCTAGATCCCAATAAAAGTAAGAAAAAATTTCATTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATTTCTCTAGATCCCAATAAAAGTAAGAAAAAATTTCATTCTGC  200

seq1  TGTGTGTACATGCTTTAAAACGTATCTTTCACTCGAAACCATATGCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACATGCTTTAAAACGTATCTTTCACTCGAAACCATATGCTGGG  250

seq1  GGAATTACTTTTATATCTGGGGATGAACCTGAACCCAACATTGGTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTACTTTTATATCTGGGGATGAACCTGAACCCAACATTGGTATTTT  300

seq1  CTTTCCAAATCTTAGTAGTCCTTCAAAATGGCTAACGAAAAAACAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAATCTTAGTAGTCCTTCAAAATGGCTAACGAAAAAACAACAAC  350

seq1  AAACAAACAAACAAACAAACAAAAAGAATGACTAAACTGAGGTGGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAAAAGAATGACTAAACTGAGGTGGAATTC  400

seq1  AACATTTCAGCCTGAATATTCAGCCCAGCCAAATCTTCAGGCTCTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCAGCCTGAATATTCAGCCCAGCCAAATCTTCAGGCTCTGAATT  450

seq1  AATAAACTCATTCCGTCTGACTTGATTTTAGGGTCACATTGAGCCAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTCATTCCGTCTGACTTGATTTTAGGGTCACATTGAGCCAAAAC  500

seq1  CAACTTCCGGGGCTTGGGAGCCTTGCTTTGAACAGAAGGCTGTTTGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCGGGGCTTGGGAGCCTTGCTTTGAACAGAAGGCTGTTTGCTTG  550

seq1  TTCCCAGTGGGAATACATTATGCTGAGTGATGGCTTCCTGTTTGTCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTGGGAATACATTATGCTGAGTGATGGCTTCCTGTTTGTCCTGG  600

seq1  AGGGGCCTCCCTGGCCTGAAAGAAGTCACAATTTGGGTCAGCTCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCTCCCTGGCCTGAAAGAAGTCACAATTTGGGTCAGCTCTCTCTG  650

seq1  CAGGGGCCATTCCTGACAGCTTTCTTGGGATAAATGAGATCTGAAACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCCATTCCTGACAGCTTTCTTGGGATAAATGAGATCTGAAACATC  700

seq1  GGGCTTTCAGTATATGAAAAGGTCTTGGCACAAAGCCCCCGTCTCTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCAGTATATGAAAAGGTCTTGGCACAAAGCCCCCGTCTCTCTAC  750

seq1  AGAGGGCTCTGACTTTGAAAATGCCCTGCATGCTGCAGTTTTTCCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCTCTGACTTTGAAAATGCCCTGCATGCTGCAGTTTTTCCCCAGC  800

seq1  CCACAGGGACTCCTGCTGGGGCATCTTGCTAGGAGGTCCACGTGCTCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGACTCCTGCTGGGGCATCTTGCTAGGAGGTCCACGTGCTCCCG  850

seq1  TGCTCCCCACGTGGATAGATTAGATGTCTGTGGGAGGACTGCCCAGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCTCCCCACGTGGATAGATTAGATGTCTGTGGGAGGACTG-CCAGAAAC  899

seq1  TGTTGCACCTTCTGAAATGACAATGCAAGGTGCCGAAGGGTAAAAATAGC  950
      |||||||||||||| ||||||||||||| ||||||||||   ||||||| 
seq2  TGTTGCACCTTCTG-AATGACAATGCAA-GTGCCGAAGG--TAAAATAG-  944

seq1  CCTGGATCAACACATGAGTCAATGGCTGTATTTAACCAATCTTCTGTTAG  1000
      |||||||| ||||||||||| |||||||||||  |||||||||||| |||
seq2  CCTGGATC-ACACATGAGTC-ATGGCTGTATT--ACCAATCTTCTG-TAG  989

seq1  GGAACAAAAAAGCCTTAAAATGCCACCATGCTGAAAATAACGGGCAATTA  1050
      |||||||||||||||| |||||||||||||||||||||||||||||    
seq2  GGAACAAAAAAGCCTT-AAATGCCACCATGCTGAAAATAACGGGCA---T  1035

seq1  AAGCACACCGAACCGAACCCATGATATGACTTGTGGCAGCCAAGTGTTCT  1100
      ||||||| ||| |   | || |||  |||||||| |||||| |||| |||
seq2  AAGCACA-CGATC--GATCCTTGAATTGACTTGT-GCAGCC-AGTG-TCT  1079

seq1  CCAGAAGCCTCCTTCTTGGAGAGCTAATTGCACGGGGTTTCCAGTCTTTA  1150
      |  |||| ||| ||| ||||||||| |||||  |     ||  |||||||
seq2  C--GAAG-CTCTTTC-TGGAGAGCT-ATTGCTAG-----TCAGGTCTTTA  1119

seq1  GCTTCCCCCTCAG  1163
      |||| ||||||||
seq2  GCTT-CCCCTCAG  1131

seq1: chr19_22776703_22777661
seq2: B6Ng01-127I03.g_68_1017 (reverse)

seq1  TGTACCTAGAATAGATGAGTCACTGTTTTATTTGGAAATTATTTGTGATG  50
      |||||| |||| ||||||||||| |  |||||  ||||| ||||||||||
seq2  TGTACC-AGAAAAGATGAGTCACGG--TTATT--GAAATAATTTGTGATG  45

seq1  ATCAAAAGAAAGCCAATTATGATTGTGCCTCTACCTCTTTATAAGGGTTT  100
      |||||||||||||||||||||| |||||||||||||  ||| ||||||||
seq2  ATCAAAAGAAAGCCAATTATGA-TGTGCCTCTACCTTCTTAAAAGGGTTT  94

seq1  AATAATTTTTGTAGCAGAATTTTTAAATCACTAATATTTAATGAGGTTAA  150
       |||| ||||||||||  |||||| |||||||||||||||||||||||||
seq2  -ATAA-TTTTGTAGCAAGATTTTT-AATCACTAATATTTAATGAGGTTAA  141

seq1  TTAAGCTTGAAAGCTTCGAGCGGGGAGAAGTTTCTGTAAAATTACATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTGAAAGCTTCGAGCGGGGAGAAGTTTCTGTAAAATTACATCCT  191

seq1  CGATTATTAGAACCATTTGCCGAGCTCTTTCAAGAGCTTTGTGGTGTTCA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGATTATTAGACCCATTTGCCGAGCTCTTTCAAGAGCTTTGTGGTGTTCA  241

seq1  GAACTCAGTGTCCAAGCCTAACCAGCCCCAGGAAAATTAACTTTGTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGTGTCCAAGCCTAACCAGCCCCAGGAAAATTAACTTTGTAGAG  291

seq1  AGAAACTATAACACAGGAAGGAACCAGTCCAAGCTGACAGAGAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTATAACACAGGAAGGAACCAGTCCAAGCTGACAGAGAGGAAGGA  341

seq1  GCCCAACTTTCTTCCTGTGCCCAAATTGCATCCTACCAGATGACAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACTTTCTTCCTGTGCCCAAATTGCATCCTACCAGATGACAAGCAC  391

seq1  TAAACCACCCTGGACTCTCAGAAGACTAGCTCACTCATAGGGACATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACCCTGGACTCTCAGAAGACTAGCTCACTCATAGGGACATTTCA  441

seq1  TAACTTACACAGCAAAATGGCTCAGTCAGCAGATACCGTGAGGGGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACACAGCAAAATGGCTCAGTCAGCAGATACCGTGAGGGGTTATT  491

seq1  TTGGCAACTCTATCTATTGAGGGCTTCCACATGATTTACAAAGTGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAACTCTATCTATTGAGGGCTTCCACATGATTTACAAAGTGAGCAG  541

seq1  AGTATAGGCTTACTTGTTTACAAATCATCTTTTCTAATTAATGCAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGCTTACTTGTTTACAAATCATCTTTTCTAATTAATGCAGAACT  591

seq1  GGCTTGTGGGCCAGGTAAGACTAAACCTAATTAAGGGCATACAGTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGGGCCAGGTAAGACTAAACCTAATTAAGGGCATACAGTTAAAA  641

seq1  CCTCTCAAGCCAGCCACATAAATCTCTCCCAGCTCTCCTCTGCCATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAAGCCAGCCACATAAATCTCTCCCAGCTCTCCTCTGCCATTTAC  691

seq1  TCTGTCTATTGGATCATGTGGAGTCACTTAGTACAGTCTTCATATAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTATTGGATCATGTGGAGTCACTTAGTACAGTCTTCATATAATTA  741

seq1  AGACAATTATCCTTAGCCCTTGCTTGACACTGAAAGCTTTAACTATTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTATCCTTAGCCCTTGCTTGACACTGAAAGCTTTAACTATTGAG  791

seq1  CCCACAAAGGAAAGTGTCTAGCTCTCTGGGCTTTGAGGGAGGGGAAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAGGAAAGTGTCTAGCTCTCTGGGCTTTGAGGGAGGGGAAAACA  841

seq1  CAGTAGGGTAGTTGCTTTGTGGGGAGGCTGTCCCTGAGAATTTCCAGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGTAGTTGCTTTGTGGGGAGGCTGTCCCTGAGAATTTCCAGGTT  891

seq1  TGAGTCTGAGGTTTAGAAATGATCTCTCTTTGCATCCTGCAAATTTGACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAGGTTTAGAAATGATCTCTCTTTGCATCCTGCAAATTTGACC  941

seq1  TGGGAATTC  959
      |||||||||
seq2  TGGGAATTC  950