BAC Information

Click to search

BAC

Clone NameB6Ng01-129F07
Chromosome19 (Build37)
Map Location 28,888,038 - 29,044,176
singlet/doubletdoublet
Overlap geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2
Upstream geneRfx3, LOC666997, LOC433235, Glis3, EG434460, EG627788
Downstream geneLOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129F07.bB6Ng01-129F07.g
ACCDH930942DH930943
length1,045245
definitionDH930942|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F07, 5' end.DH930943|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,043,118 - 29,044,176)(28,888,038 - 28,888,282)
sequence
gaattcagaagaattcaggattctgctaccctatcaaggtgagtgtggta
aatcacgagtcaggagagtctagtcatatcaagaggtagaaagactgaaa
cagggtatgcagatgtgacagtgtttccagggaccaataatctctgcgtt
gtggaggcagggaggtggcagggcccttggactcagacatgactgttggg
atgagttatgtagccttggggaagaggctgtaaaatacaggtcacactgt
cctcggagaagtgctgtggcaatggagtgaccatatgtgacacgcccacc
tctgtgcagatcttcaatcagaactgattcctcccttctattttgcctct
agaagcttggctaccaattcgttttgtcacactagtattgtcaccggtga
cctgcctgtgaagatcatcacaggtcttgtagcagctaactgtagtgagg
agtctgtgctccgggtttccagagagccgagaaccatctgtatatatatc
tttgtgtactaagagagcactaggaactgggtatagatgaaatgctgagt
ccctcattaccccaaggtttcccttacagagaaataaactatagctactg
aagggaatatcgtcagcagtatcttttgagggacagctccctgtaactgt
ttcaactacagagatcctcaacgtaaagtatcaataataagtcacaagat
aatctttaaaattctattttgagtcagggtctcatggcgtccaggcggac
gctcaaactcgttagattatttgtggtggtttgaatatgcttggcccagg
gagaagcactattaggagaagggtctcattatctactcctacagacacat
ttcctccaacaaggacacacctattctcaacctccacaatattcaggcct
catttgatttcgactctgtcacttctgccttcctagtgctagcagtacag
acatggatgaaagacagttttattctgttctgatggatacactatgcaaa
cataccaacggaccactggaccgcctcatttaaagatctatgttt
tgtaattacagatgtgtgctgctgccttcagctttcccatatgggttcca
gagatcaaacgtaggccaccatgattccacagaaggtgctgagccacctc
accagttctaataaatgtttaaatgtatcttgaattttagaaatatctgt
aacaaataaaattagacttttaccgagagatgaatcttcagtcacaccaa
gagttcagttttcctgatctctgagttgatgggggggtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29043118_29044176
seq2: B6Ng01-129F07.b_49_1093 (reverse)

seq1  AAACATAAAGATTCTTTTAAAATGAGGGCGGTACCATGTGGTTCCGTTGG  50
      ||||||| |   |||||  |||||| |||||| ||| |||| ||||||||
seq2  AAACATAGA---TCTTT--AAATGA-GGCGGT-CCA-GTGG-TCCGTTGG  41

seq1  TAATGTTTGCCTAGTGTTATTCATCAGAACAGAATAAATCTGTCTTTCAT  100
      | |||||||| ||||| ||| ||||||||||||||||| |||||||||||
seq2  T-ATGTTTGCATAGTG-TATCCATCAGAACAGAATAAAACTGTCTTTCAT  89

seq1  CCATGTCTGTACTGCTAGCACTAGGAAGGCAGAAGTGACAGAGTCGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCATGTCTGTACTGCTAGCACTAGGAAGGCAGAAGTGACAGAGTC-GAAA  138

seq1  TTCAAAATGAGCCTGGAATATTGTGGAGGTTGAGAATAGGTGTGTCCTTG  200
      |   ||||||| |  |||||||||||||||||||||||||||||||||||
seq2  T--CAAATGAGGCCTGAATATTGTGGAGGTTGAGAATAGGTGTGTCCTTG  186

seq1  TTGGAGGAAATGTGTCTGTGGGAGTAGATAATGAGACCCTTCTCCTAATA  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGGAGGAAATGTGTCTGTAGGAGTAGATAATGAGACCCTTCTCCTAATA  236

seq1  GTGCTTCTCCCTGGGCCAAGCATATTCAAACCACCACAAATAATCTAACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTCCCTGGGCCAAGCATATTCAAACCACCACAAATAATCTAACG  286

seq1  AGTTTGAGCGTCCGCCTGGACGCCATGAGACCCTGACTCAAAATAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGCGTCCGCCTGGACGCCATGAGACCCTGACTCAAAATAGAATT  336

seq1  TTAAAGATTATCTTGTGACTTATTATTGATACTTTACGTTGAGGATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTATCTTGTGACTTATTATTGATACTTTACGTTGAGGATCTCT  386

seq1  GTAGTTGAAACAGTTACAGGGAGCTGTCCCTCAAAAGATACTGCTGACGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGAAACAGTTACAGGGAGCTGTCCCTCAAAAGATACTGCTGACGA  436

seq1  TATTCCCTTCAGTAGCTATAGTTTATTTCTCTGTAAGGGAAACCTTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTTCAGTAGCTATAGTTTATTTCTCTGTAAGGGAAACCTTGGGG  486

seq1  TAATGAGGGACTCAGCATTTCATCTATACCCAGTTCCTAGTGCTCTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGGACTCAGCATTTCATCTATACCCAGTTCCTAGTGCTCTCTTA  536

seq1  GTACACAAAGATATATATACAGATGGTTCTCGGCTCTCTGGAAACCCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAAAGATATATATACAGATGGTTCTCGGCTCTCTGGAAACCCGGA  586

seq1  GCACAGACTCCTCACTACAGTTAGCTGCTACAAGACCTGTGATGATCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTCCTCACTACAGTTAGCTGCTACAAGACCTGTGATGATCTTC  636

seq1  ACAGGCAGGTCACCGGTGACAATACTAGTGTGACAAAACGAATTGGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGTCACCGGTGACAATACTAGTGTGACAAAACGAATTGGTAGC  686

seq1  CAAGCTTCTAGAGGCAAAATAGAAGGGAGGAATCAGTTCTGATTGAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCTAGAGGCAAAATAGAAGGGAGGAATCAGTTCTGATTGAAGAT  736

seq1  CTGCACAGAGGTGGGCGTGTCACATATGGTCACTCCATTGCCACAGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGAGGTGGGCGTGTCACATATGGTCACTCCATTGCCACAGCACT  786

seq1  TCTCCGAGGACAGTGTGACCTGTATTTTACAGCCTCTTCCCCAAGGCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGAGGACAGTGTGACCTGTATTTTACAGCCTCTTCCCCAAGGCTAC  836

seq1  ATAACTCATCCCAACAGTCATGTCTGAGTCCAAGGGCCCTGCCACCTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCATCCCAACAGTCATGTCTGAGTCCAAGGGCCCTGCCACCTCCC  886

seq1  TGCCTCCACAACGCAGAGATTATTGGTCCCTGGAAACACTGTCACATCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCACAACGCAGAGATTATTGGTCCCTGGAAACACTGTCACATCTG  936

seq1  CATACCCTGTTTCAGTCTTTCTACCTCTTGATATGACTAGACTCTCCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTGTTTCAGTCTTTCTACCTCTTGATATGACTAGACTCTCCTGA  986

seq1  CTCGTGATTTACCACACTCACCTTGATAGGGTAGCAGAATCCTGAATTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGATTTACCACACTCACCTTGATAGGGTAGCAGAATCCTGAATTCT  1036

seq1  TCTGAATTC  1059
      |||||||||
seq2  TCTGAATTC  1045

seq1: chr19_28888038_28888282
seq2: B6Ng01-129F07.g_74_318

seq1  TGTAATTACAGATGTGTGCTGCTGCCTTCAGCTTTCCCATATGGGTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTACAGATGTGTGCTGCTGCCTTCAGCTTTCCCATATGGGTTCCA  50

seq1  GAGATCAAACGTAGGCCACCATGATTCCACAGAAGGTGCTGAGCCACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAACGTAGGCCACCATGATTCCACAGAAGGTGCTGAGCCACCTC  100

seq1  ACCAGTTCTAATAAATGTTTAAATGTATCTTGAATTTTAGAAATATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTCTAATAAATGTTTAAATGTATCTTGAATTTTAGAAATATCTGT  150

seq1  AACAAATAAAATTAGACTTTTACCGAGAGATGAATCTTCAGTCACACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAAATTAGACTTTTACCGAGAGATGAATCTTCAGTCACACCAA  200

seq1  GAGTTCAGTTTTCCTGATCTCTGAGTTGATGGGGGGGTGGGGGTG  245
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGTTTTCCTGATCTCTGAGTTGATGGGGGGGTGGGGGTG  245