BAC Information

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BAC

Clone NameB6Ng01-129K21
Chromosome19 (Build37)
Map Location 24,475,528 - 24,625,403
singlet/doubletdoublet
Overlap genePip5k1b, 2900009I07Rik
Upstream geneMamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457
Downstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129K21.bB6Ng01-129K21.g
ACCDH931199DH931200
length9931,097
definitionDH931199|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K21, 5' end.DH931200|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,624,407 - 24,625,403)(24,475,528 - 24,476,627)
sequence
gaattcctgcctctaactgtaaaatcgcaatgaaactgaaagcccggcat
gtttggcacgcttaacattgttcccaccctagaaatgggtatgcagtctt
tccctggagcctcaggagatgattctaattgcacatgttaggagcctgga
ggatataattaccttgggggtgaaactaaagtttggagacaggcctgtag
aaagttcatcttttttttttttttttttttttttggtaagaaaaataggg
ggtatttaagctgcatccagtaatgctggactgatgagtttgaagaccag
gatagagacataattagttatagaaaggtgtcttgcttcacagatagact
ggcacaagaaatgcaatggttgaacatgctgcgtgatgggtttttctttc
tttcctatttttttctttgagacagggtttctctgtgtagccttggctgt
cctggaattcactctatacaccgggatggctttgaactcaaagatctccc
tgcctctgcctcccaggtgctgggattaaacatatgtgccaccatcatct
gacaatttatcttattttaagtttatgggcattgtcattttgcctgtatg
tatgtttgtttgtgtgattgtattggatcccctggaactggagttacaga
cagttgtgagctgccatctggggtgctgggaattgaacccccggtccttt
tggaagaacagccagtgctcctaacagctgagccttctctacagctcagg
ggatgggtttctaatgcttaattcaacctttttgttgttaaaactgggct
cactgtcatgttggcctattttgagtgagtaggaagtatggcgcacgtgt
tatgcaaaaattttttaatgaaaaaaagctaaacattccgggtttgttta
tgtgtattattcttggaacttagcttattcaaatgtgagaactctaaact
gcatcaccaccttctaattaatgttaaatctttgatgttctta
gaattcagaaggcccagatggatttctttaatttaaccctgtacagagag
tcaaaagccatttctcctcctacttgccactcagggcggtatgtcacaag
gtcaatgcctttcagaggaaccagcaccctagaatgttctgtctgggcct
aacacagaccgcatgcctcggtgcgttttgcattctgtgcccatacttga
tgctgttttccagagccatgagagcagtcttttatcacagtgtgcaggtg
tgtcagcagagagtaccatgttccttgctgtccctaccctggaaacagaa
agcagtctcagctgcccgagtctgtaactttggccagacccctcagtcct
caggggttgggagtgttactggaaatgcttctggcttgaatggtgggtca
tatccttagaaattgtgaagcagaactttgggaataagaagataaagtaa
tgtcctcttgctctaagggacaccaaaacccagcaaccttcctgctatgg
tatgcggttaagttttgagttcttgaaggaatgaggatcccactggcgtg
tttaattaaataagcagaacaagaaaaagaaaaagaaaaagaaaaagaaa
aagaaaaaaaaaaggaaattgtaattatatcaatctcatttcatgcctct
taaagatcgagtgcttgggtgagagaaataatagcacagtaataaataga
aataagccagtcattttttgagcaactcatttgtgccagacacagcatag
atagtgataatttcactgatgtaaccactcacacacttccccaaggctta
cgaggttctcagtgcccttgactgacgctgactctttttatcctcacggt
aactttcagaggtaagtgacacttggtaagcagctccaacgtgaaaattt
gaaatccagaatgctccaccgttgggaacgatcaatagtgtatcaacagt
atgtatctgtgatatggcgagcatagctgctttccagcatcttcaggatt
ctgggtacagactattgccacaagaggaaatcccacacccaaattccatg
gaggtcactaccaaacagaacctgcagcaagccagttattcattgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24624407_24625403
seq2: B6Ng01-129K21.b_47_1039 (reverse)

seq1  TAAGAAACATCCAAAGATTTTAAACATTAATTTGAAGGTGGTTGATGCAG  50
      |||| ||||| |||||||||  |||||||||| |||||||| ||||||||
seq2  TAAG-AACAT-CAAAGATTT--AACATTAATTAGAAGGTGG-TGATGCAG  45

seq1  TTTAGAGTTCCTCACCATTTGTAATAGCCTTAAGTTCCAAGAAT-ATACA  99
      ||||||||| |||| |||||| |  |||  |||||||||||||| |||||
seq2  TTTAGAGTT-CTCA-CATTTGAATAAGC--TAAGTTCCAAGAATAATACA  91

seq1  CATAAACAAACCAGG-ATGCTTAGCCTTTTTTCA-TGAAAAATATTTGCC  147
      |||||||||||| || ||| ||||| |||||||| | |||||| ||||| 
seq2  CATAAACAAACCCGGAATGTTTAGCTTTTTTTCATTAAAAAATTTTTGCA  141

seq1  TAACACCTGCGCCATACTTCCTACTCACTC-AAATAGGCC-ACATGACAG  195
      |||||| ||||||||||||||||||||||| ||||||||| |||||||||
seq2  TAACACGTGCGCCATACTTCCTACTCACTCAAAATAGGCCAACATGACAG  191

seq1  TGAGCCCAGTTTTAACAACAAAAAGGTATGAATTAAGCATTAGAAACCCA  245
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAGCCCAGTTTTAACAACAAAAAGGT-TGAATTAAGCATTAGAAACCCA  240

seq1  TCCCCTGAGCTGTAGAGAAGGCTCAGCTGTTAGGAGCACTGGCTGTTCTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGAGCTGTAGAGAAGGCTCAGCTGTTAGGAGCACTGGCTGTTCTT  290

seq1  CC-AAAGGACCGGGGGTTCAATTCCCAGCACCCCAGATGGCAGCTCACAA  344
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGACCGGGGGTTCAATTCCCAGCACCCCAGATGGCAGCTCACAA  340

seq1  CTGTCTGTAACTCCAGTTCCAGGGGATCCAATACAATCACACAAACAAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTAACTCCAGTTCCAGGGGATCCAATACAATCACACAAACAAAC  390

seq1  ATACATACAGGCAAAATGACAATGCCCATAAACTTAAAATAAGATAAATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACAGGCAAAATGACAATGCCCATAAACTTAAAATAAGATAAATT  440

seq1  GTCAGATGATGGTGGCACATATGTTTAATCCCAGCACCTGGGAGGCAGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATGATGGTGGCACATATGTTTAATCCCAGCACCTGGGAGGCAGAG  490

seq1  GCAGGGAGATCTTTGAGTTCAAAGCCATCCCGGTGTATAGAGTGAATTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGATCTTTGAGTTCAAAGCCATCCCGGTGTATAGAGTGAATTCC  540

seq1  AGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAGAAAAAAATAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAGAAAAAAATAGG  590

seq1  AAAGAAAGAAAAACCCATCACGCAGCATGTTCAACCATTGCATTTCTTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAAACCCATCACGCAGCATGTTCAACCATTGCATTTCTTGT  640

seq1  GCCAGTCTATCTGTGAAGCAAGACACCTTTCTATAACTAATTATGTCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTATCTGTGAAGCAAGACACCTTTCTATAACTAATTATGTCTCT  690

seq1  ATCCTGGTCTTCAAACTCATCAGTCCAGCATTACTGGATGCAGCTTAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTCTTCAAACTCATCAGTCCAGCATTACTGGATGCAGCTTAAAT  740

seq1  ACCCCCTATTTTTCTTACCAAAAAAAAAAAAAAAAAAAAAAAAGATGAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTATTTTTCTTACCAAAAAAAAAAAAAAAAAAAAAAAAGATGAAC  790

seq1  TTTCTACAGGCCTGTCTCCAAACTTTAGTTTCACCCCCAAGGTAATTATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGGCCTGTCTCCAAACTTTAGTTTCACCCCCAAGGTAATTATA  840

seq1  TCCTCCAGGCTCCTAACATGTGCAATTAGAATCATCTCCTGAGGCTCCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGGCTCCTAACATGTGCAATTAGAATCATCTCCTGAGGCTCCAG  890

seq1  GGAAAGACTGCATACCCATTTCTAGGGTGGGAACAATGTTAAGCGTGCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACTGCATACCCATTTCTAGGGTGGGAACAATGTTAAGCGTGCCA  940

seq1  AACATGCCGGGCTTTCAGTTTCATTGCGATTTTACAGTTAGAGGCAGGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCCGGGCTTTCAGTTTCATTGCGATTTTACAGTTAGAGGCAGGAA  990

seq1  TTC  997
      |||
seq2  TTC  993

seq1: chr19_24475528_24476627
seq2: B6Ng01-129K21.g_69_1165

seq1  GAATTCAGAAGGCCCAGATGGATTTCTTTAATTTAACCCTGTACAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGGCCCAGATGGATTTCTTTAATTTAACCCTGTACAGAGAG  50

seq1  TCAAAAGCCATTTCTCCTCCTACTTGCCACTCAGGGCGGTATGTCACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCCATTTCTCCTCCTACTTGCCACTCAGGGCGGTATGTCACAAG  100

seq1  GTCAATGCCTTTCAGAGGAACCAGCACCCTAGAATGTTCTGTCTGGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGCCTTTCAGAGGAACCAGCACCCTAGAATGTTCTGTCTGGGCCT  150

seq1  AACACAGACCGCATGCCTCGGTGCGTTTTGCATTCTGTGCCCATACTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGACCGCATGCCTCGGTGCGTTTTGCATTCTGTGCCCATACTTGA  200

seq1  TGCTGTTTTCCAGAGCCATGAGAGCAGTCTTTTATCACAGTGTGCAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTTCCAGAGCCATGAGAGCAGTCTTTTATCACAGTGTGCAGGTG  250

seq1  TGTCAGCAGAGAGTACCATGTTCCTTGCTGTCCCTACCCTGGAAACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAGAGAGTACCATGTTCCTTGCTGTCCCTACCCTGGAAACAGAA  300

seq1  AGCAGTCTCAGCTGCCCGAGTCTGTAACTTTGGCCAGACCCCTCAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTCAGCTGCCCGAGTCTGTAACTTTGGCCAGACCCCTCAGTCCT  350

seq1  CAGGGGTTGGGAGTGTTACTGGAAATGCTTCTGGCTTGAATGGTGGGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTTGGGAGTGTTACTGGAAATGCTTCTGGCTTGAATGGTGGGTCA  400

seq1  TATCCTTAGAAATTGTGAAGCAGAACTTTGGGAATAAGAAGATAAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTAGAAATTGTGAAGCAGAACTTTGGGAATAAGAAGATAAAGTAA  450

seq1  TGTCCTCTTGCTCTAAGGGACACCAAAACCCAGCAACCTTCCTGCTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTTGCTCTAAGGGACACCAAAACCCAGCAACCTTCCTGCTATGG  500

seq1  TATGCGGTTAAGTTTTGAGTTCTTGAAGGAATGAGGATCCCACTGGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGGTTAAGTTTTGAGTTCTTGAAGGAATGAGGATCCCACTGGCGTG  550

seq1  TTTAATTAAATAAGCAGAACAAGAAAAAGAAAAAGAAAAAGAAAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAATAAGCAGAACAAGAAAAAGAAAAAGAAAAAGAAAAAGAAA  600

seq1  AAGAAAAAAAAAAGGAAATTGTAATTATATCAATCTCATTTCATGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAAAAGGAAATTGTAATTATATCAATCTCATTTCATGCCTCT  650

seq1  TAAAGATCGAGTGCTTGGGTGAGAGAAATAATAGCACAGTAATAAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCGAGTGCTTGGGTGAGAGAAATAATAGCACAGTAATAAATAGA  700

seq1  AATAAGCCAGTCATTTTTTGAGCAACTCATTTGTGCCAGACACAGCATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCAGTCATTTTTTGAGCAACTCATTTGTGCCAGACACAGCATAG  750

seq1  ATAGTGATAATTTCACTGATGTAACCACTCACACACTTCCCCAAGGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATAATTTCACTGATGTAACCACTCACACACTTCCCCAAGGCTTA  800

seq1  CGAGGTTCTCAGTGCCCTTGACTGACGCTGACTC-TTTTATCCTCACGGT  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGAGGTTCTCAGTGCCCTTGACTGACGCTGACTCTTTTTATCCTCACGGT  850

seq1  AACTTTCAGAGGTAAGTGACACTTGGTAAGCAGCTCCAACGTGAAAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAGAGGTAAGTGACACTTGGTAAGCAGCTCCAACGTGAAAATTT  900

seq1  GAAATCCAGAATGCTCCACCGTTGGGAACGATCAATAGTGTTATCAACAG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAATCCAGAATGCTCCACCGTTGGGAACGATCAATAGTG-TATCAACAG  949

seq1  TATGTATCTGTGATATGGCGAGCATAGCTGCTTTCCAGCATCTCAGGGAT  999
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  TATGTATCTGTGATATGGCGAGCATAGCTGCTTTCCAGCATCTTCAGGAT  999

seq1  TCTGGGTACAGACAATTGCCACAAGAGGAAAATCCCACACCCAAATTCCC  1049
      ||||||||||||| |||||||||||||| |||||||||||||||||| ||
seq2  TCTGGGTACAGACTATTGCCACAAGAGG-AAATCCCACACCCAAATT-CC  1047

seq1  ATGAGGGCCACTACCAAACAAGACCTGCAGCAGAGCAGTTTATTCATTGT  1099
      |||  || ||||||||||||  |||||||||| |||   |||||||||||
seq2  ATGGAGGTCACTACCAAACAGAACCTGCAGCA-AGCCAGTTATTCATTGT  1096

seq1  C  1100
      |
seq2  C  1097