BAC Information

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BAC

Clone NameB6Ng01-130L12
Chromosome19 (Build37)
Map Location 38,920,173 - 39,013,802
singlet/doubletdoublet
Overlap geneTbc1d12, Hells
Upstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l
Downstream geneLOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130L12.bB6Ng01-130L12.g
ACCDH931962DH931963
length1,1531,057
definitionDH931962|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L12, 5' end.DH931963|Mus musculus domesticus DNA, BAC clone: B6Ng01-130L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,920,173 - 38,921,354)(39,012,725 - 39,013,802)
sequence
gaattctatttttactccagaagagggcatcagatttcattacggatggt
tatgagtcaccacgtggttgctgggatttgaactcgggaccttcggaaga
gcagtcggcactcttaaccactgagccatctcaccagccccttttcttgg
ttttttgagacagggtttctctgtgtagccctggctgtcctggaactcac
tctgtagaccaggctggactcgaactcagaaatccgcctgcctctgcctc
ccaagtgctgggattaaaggcgtgcgccaccactgcccggcttgcagtgg
ttcttaaatttgacaattacttggagggagagttatcaagagtgaattgt
tttgtttctaagtgatgatttctggattcagtagagtgtagacggaatct
ccctggactctgaagctggtaaccgtagcccccaccattctgatgatggt
tgttggacagcaatcactggaaagctagtgcttcacctagctgactgacg
gactggtctccctgggtgggaactgaatgaaaacacagcacacagattta
cagctcatggtactgctttgatttaaagcttggtcagatctgcttattgt
cattaacagagagcaatagagaacagacgaagaaatctaaaatatagcat
tttacaagcttgaaaattcctgtctgcatacttaatctcagttttctttt
aattaatgggaagaggctgttatttatgctgcttagactgtgcttgtctg
ctttaaggaaagcttttagcttgtaagatcttcctgggttccccgctgca
gcagcattttgtactgttttacagagtatcaacaagcatgttatttccct
tccttctgaagttctgcacagaccatggctcggctcatatcccatggaaa
tttgctgcttcagcctttcttgaactcttttttgtggctaagagagggaa
acccatgtgactgtctggtttcagcaactctttcctgcattagagaagtt
taccttagaaaccagctgctactttagggaactgatatcaggtttagtta
ccctgaatttgctttcattctttttattgattcatggtgtgatttttgaa
tgagaatatttctgtcttttctaaccccatagataaacactgaaactgga
act
gaattctagtgctccctgaagaaagcaggttagctagttagtcagaacat
acaggtaagctataggttcaactgagactctgcctcatgaacatggaaga
ataacctaggaagcctcccaacagacatccctgggactttatacatgttc
acatgtgaacatccataagccttcagacacacacaaacacacataaaaat
gaaaggataatttaaaagaaaagtaattttttttttaattttaaggagca
agaacaatggctaagtgttctggttccgttcccagaagttccaggttcaa
gtcccagcacccacctagaatctcacaaacatttgtaactccaactgtaa
ggaatccaatgccctcttctggcctctccaggtaccaggcacacatgtga
atgcacacacacacacacacacacacacacacacacacacgcgcgcacac
atacacacacgtgtatatgtgtatacacacacagaggcactcactcatag
tcataaaaaattcatctttgagaaagatacattacccattaagaaaactt
ataaatagttgaaaattaaagcaaacaaacaccaaacagatggacaagct
gaatatatataacacccgcttctgactcccagaggtattccacacacata
gtgtacttacacacatccaggcaaaacaaaaaacatacacataagttatt
actttttaaaagacaatgggaagaataaatctgaaatttaagtagatgat
gaaataataagtaacaattttctcaagaggactgaatgtatttaacacat
tcaagaccaagccacagcaacaaaaaggagaaaatcctggcttactatat
tacctcctgtaagtttaaatgaccgtttttttttctccaacttctctttc
ttcttctgtcctgtaagaaaaatttattccttaggacatgtgacaaaaat
atacttacattatatcaaatgatttaaataaaatatttacataaaaacaa
gacttctactctagctaaagatatagtaacgatttatcctctctctctca
agaacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38920173_38921354
seq2: B6Ng01-130L12.b_48_1200

seq1  GAATTCTATTTTTACTCCAGAAGAGGGCATCAGATTTCATTACGGATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTTTACTCCAGAAGAGGGCATCAGATTTCATTACGGATGGT  50

seq1  TATGAGTCACCACGTGGTTGCTGGGATTTGAACTCGGGACCTTCGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCACCACGTGGTTGCTGGGATTTGAACTCGGGACCTTCGGAAGA  100

seq1  GCAGTCGGCACTCTTAACCACTGAGCCATCTCACCAGCCCCTTTTCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCGGCACTCTTAACCACTGAGCCATCTCACCAGCCCCTTTTCTTGG  150

seq1  TTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAC  200

seq1  TCTGTAGACCAGGCTGGACTCGAACTCAGAAATCCGCCTGCCTCTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGCTGGACTCGAACTCAGAAATCCGCCTGCCTCTGCCTC  250

seq1  CCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTTGCAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTTGCAGTGG  300

seq1  TTCTTAAATTTGACAATTACTTGGAGGGAGAGTTATCAAGAGTGAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATTTGACAATTACTTGGAGGGAGAGTTATCAAGAGTGAATTGT  350

seq1  TTTGTTTCTAAGTGATGATTTCTGGATTCAGTAGAGTGTAGACGGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTAAGTGATGATTTCTGGATTCAGTAGAGTGTAGACGGAATCT  400

seq1  CCCTGGACTCTGAAGCTGGTAACCGTAGCCCCCACCATTCTGATGATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACTCTGAAGCTGGTAACCGTAGCCCCCACCATTCTGATGATGGT  450

seq1  TGTTGGACAGCAATCACTGGAAAGCTAGTGCTTCACCTAGCTGACTGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGACAGCAATCACTGGAAAGCTAGTGCTTCACCTAGCTGACTGACG  500

seq1  GACTGGTCTCCCTGGGTGGGAACTGAATGAAAACACAGCACACAGATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTCTCCCTGGGTGGGAACTGAATGAAAACACAGCACACAGATTTA  550

seq1  CAGCTCATGGTACTGCTTTGATTTAAAGCTTGGTCAGATCTGCTTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATGGTACTGCTTTGATTTAAAGCTTGGTCAGATCTGCTTATTGT  600

seq1  CATTAACAGAGAGCAATAGAGAACAGACGAAGAAATCTAAAATATAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACAGAGAGCAATAGAGAACAGACGAAGAAATCTAAAATATAGCAT  650

seq1  TTTACAAGCTTGAAAATTCCTGTCTGCATACTTAATCTCAGTTTTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGCTTGAAAATTCCTGTCTGCATACTTAATCTCAGTTTTCTTTT  700

seq1  AATTAATGGGAAGAGGCTGTTATTTATGCTGCTTAGACTGTGCTTGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGGGAAGAGGCTGTTATTTATGCTGCTTAGACTGTGCTTGTCTG  750

seq1  CTTTAAGGAAAGCTTTTAGCTTGTAAGATCTTCCTGGGTTCCCCGCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGAAAGCTTTTAGCTTGTAAGATCTTCCTGGGTTCCCCGCTGCA  800

seq1  GCAGCATTTTGTACTGTTTTACAGAGTATCAACAAGCATGTTATTTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCAGCATTTTGTACTGTTTTACAGAGTATCAACAAGCATGTTA-TTTCCC  849

seq1  TTCCTTCTGAAGTTCTGCACAGACCATGGCTCGGCTCATATCCCATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGAAGTTCTGCACAGACCATGGCTCGGCTCATATCCCATGGAA  899

seq1  ATTTGCTGCTTCAGCCTTTCTTGAACTCATTTTTGTGGCTAAGAGAGGGA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTGCTGCTTCAGCCTTTCTTGAACTCTTTTTTGTGGCTAAGAGAGGGA  949

seq1  AACCCATGTGACTGTCTGGTTTTTCAGCAAACTCTTTCCTGCAATTAAGA  1000
      |||||||||||||||||||  ||||||| ||||||||||||||  | |||
seq2  AACCCATGTGACTGTCTGG--TTTCAGC-AACTCTTTCCTGCA--TTAGA  994

seq1  GAAGTTTACCTTAGGAAACCAAGCTGGCTACTTTAGGGTGAACTTGATAA  1050
      ||||||||||||| |||||| |||| |||||||||||  |||| |||| |
seq2  GAAGTTTACCTTA-GAAACC-AGCT-GCTACTTTAGG--GAAC-TGAT-A  1037

seq1  TCATGTGTTTAAGTTACCCCTGAATTTGGCTTTTCAATTCCTTTTTTATT  1100
      |||   | || ||||| |||||||||| |||||   ||||  |||||| |
seq2  TCA---GGTTTAGTTA-CCCTGAATTT-GCTTT--CATTC--TTTTTA-T  1077

seq1  TGAATTTCATGTTGTGTATTTTTTGTATTAGAAAATATTTCTGTCTTTTC  1150
      |||  ||||||  ||||  |||||| ||  || |||||||||||||||| 
seq2  TGA--TTCATG--GTGTGATTTTTGAAT--GAGAATATTTCTGTCTTTT-  1120

seq1  CTAACCCCACATAGATTAAAAC---ATTTGGAACT  1182
      |||||||  ||||||| || ||   |  |||||||
seq2  CTAACCC--CATAGATAAACACTGAAACTGGAACT  1153

seq1: chr19_39012725_39013802
seq2: B6Ng01-130L12.g_69_1125 (reverse)

seq1  TAGTTCTGTGTGAAGAGA-AGAGGATAAATCTGTTTACTATAATCCTATA  49
      |||||||   || ||||| ||||||||||||   ||||||||   || ||
seq2  TAGTTCT---TG-AGAGAGAGAGGATAAATC--GTTACTATA--TCTTTA  42

seq1  AAGCCTAGAAGTAGAAGTTCTTGTTTTTAATTGTTAAATAATTTTTTATT  99
          |||| |||||||| |||||||||||  || ||||||   ||||| |
seq2  ---GCTAG-AGTAGAAG-TCTTGTTTTTA--TG-TAAATA---TTTTA-T  80

seq1  TTAAATACATTTTGATATAATTGTAATGTATATTTTTTGTCACATGTCCT  149
      |||||| || |||||||||| ||||| ||||| |||||||||||||||||
seq2  TTAAAT-CA-TTTGATATAA-TGTAA-GTATA-TTTTTGTCACATGTCCT  125

seq1  AAGGAATAAATTTATCTTACAGGAACAGAAGAAGAAAGAGAAGTTGGAGA  199
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  AAGGAATAAATTTTTCTTACAGG-ACAGAAGAAGAAAGAGAAGTTGGAGA  174

seq1  AAAAAAAACGGTCATTAAAACTTACA-GAGGTAATATAGTAAGCCAGGAT  248
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  AAAAAAAACGGTCATTTAAACTTACAGGAGGTAATATAGTAAGCCAGGAT  224

seq1  TTTCTCCTTTT--GTGCTGTGGCTTGGTCTTGAATGTGTTAAATACATTC  296
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTTTTGTTGCTGTGGCTTGGTCTTGAATGTGTTAAATACATTC  274

seq1  AGTCCTCTTGAGAAAATTGTTACTTATTATTTCATCATCTACTTAAATTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTTGAGAAAATTGTTACTTATTATTTCATCATCTACTTAAATTT  324

seq1  CAGATTTATTCTT-CCATTGTCTTTTAAAAAGTAATAACTTATGTGTATG  395
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGATTTATTCTTCCCATTGTCTTTTAAAAAGTAATAACTTATGTGTATG  374

seq1  TTTTTTGTTTTGCCTGGATGTGTGTAAGTACACTATGTGTGTGGAATACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTGCCTGGATGTGTGTAAGTACACTATGTGTGTGGAATACC  424

seq1  TCTGGGAGTCAGAAGCGGGTGTTATATATATTCAGCTTGTCCATCTGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGTCAGAAGCGGGTGTTATATATATTCAGCTTGTCCATCTGTTT  474

seq1  GGTGTTTGTTTGCTTTAATTTTCAACTATTTATAAGTTTTCTTAATGGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGTTTGCTTTAATTTTCAACTATTTATAAGTTTTCTTAATGGGT  524

seq1  AATGTATCTTTCTCAAAGATGAATTTTTTATGACTATGAGTGAGTGCCTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCTTTCTCAAAGATGAATTTTTTATGACTATGAGTGAGTGCCTC  574

seq1  TGTGTGTGTATACACATATACACGTGTGTGTATGTGTGCGCGCGTGTGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATACACATATACACGTGTGTGTATGTGTGCGCGCGTGTGTG  624

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATTCACATGTGTGCCTGGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATTCACATGTGTGCCTGGT  674

seq1  ACCTGGAGAGGCCAGAAGAGGGCATTGGATTCCTTACAGTTGGAGTTACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGAGGCCAGAAGAGGGCATTGGATTCCTTACAGTTGGAGTTACA  724

seq1  AATGTTTGTGAGATTCTAGGTGGGTGCTGGGACTTGAACCTGGAACTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGTGAGATTCTAGGTGGGTGCTGGGACTTGAACCTGGAACTTCT  774

seq1  GGGAACGGAACCAGAACACTTAGCCATTGTTCTTGCTCCTTAAAATTAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGGAACCAGAACACTTAGCCATTGTTCTTGCTCCTTAAAATTAAA  824

seq1  AAAAAAATTACTTTTCTTTTAAATTATCCTTTCATTTTTATGTGTGTTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTACTTTTCTTTTAAATTATCCTTTCATTTTTATGTGTGTTTG  874

seq1  TGTGTGTCTGAAGGCTTATGGATGTTCACATGTGAACATGTATAAAGTCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGAAGGCTTATGGATGTTCACATGTGAACATGTATAAAGTCC  924

seq1  CAGGGATGTCTGTTGGGAGGCTTCCTAGGTTATTCTTCCATGTTCATGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGTCTGTTGGGAGGCTTCCTAGGTTATTCTTCCATGTTCATGAG  974

seq1  GCAGAGTCTCAGTTGAACCTATAGCTTACCTGTATGTTCTGACTAACTAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCTCAGTTGAACCTATAGCTTACCTGTATGTTCTGACTAACTAG  1024

seq1  CTAACCTGCTTTCTTCAGGGAGCACTAGAATTC  1078
      |||||||||||||||||||||||||||||||||
seq2  CTAACCTGCTTTCTTCAGGGAGCACTAGAATTC  1057