BAC Information

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BAC

Clone NameB6Ng01-130P17
Chromosome19 (Build37)
Map Location 34,244,878 - 34,245,980
singlet/doubletsinglet
Overlap genenone
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22
Downstream geneStambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130P17.bB6Ng01-130P17.g
ACCDH932158DH932159
length1,1541,094
definitionDH932158|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P17, 5' end.DH932159|Mus musculus domesticus DNA, BAC clone: B6Ng01-130P17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaagcaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaagatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatctgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaagtggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtgaatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtggctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatctgcaacccta
taggtggatcacatatgactaccagtaccccgagctctgactctagctgc
atatgtctcaaaagatgggctagtcgcatcactgaagaaggcccattgga
cacacaaactttatatgccccgaacaggaacgccagggcaaaggggaatt
gccg
gaattctatgtgacacttgatttctaacaagtgcagggggcagctcgctc
ttccctgtgtcagagctggtaagtgccacgacttgtctcactctatgaaa
ctggctttcctacgaagcaggctcacagtcttgagtcatctagccacttc
ctgacaggcttatagttaagtcatctaggaattcctgagcccctggagga
ggaatggagtttatatagtaggtagctgtctgcagaaacctccatccagt
gtgaccagactcaccagtaaagaactgatcagcaatacagttacttccta
gttttaaatttacttaaataattagctattttcagttcttttgagacaga
gccttaggtgacccaggctggatttaagtttgcaaggtacttgtggctga
ctttgagctcatgattttcctaccttagtctcccaaatgctgggattctt
ggtgtgagccaggatgcctggctcctttttctttgtaaaccaagagtcat
aagtgaacatttttgcctgagatatgttgacatatcgtaagttaagaaat
ataggtcataaactgcaagtgaccaggaacctttgaatataacatgttct
ctttgtttttcccttagaacacatgatcataaattgatgtgactccacgg
aagacagtggacgtgacacagaataaaacacaccacaggattcagtagat
tttgcctaagtgctaaactatgatgtgacctattttacattaaaatgttt
tagttttgatatttctgatttaggagcttgttgacactagctaactgttc
agtatcctaaatttcttattttactggaaagttttcaattatttaaaatt
tgggtaagatgtttttaatctgggaatgcctaaaaccttgttactttaaa
tgttacagtcactctaatgattttttagcagaaaccgctagcaggccttg
tagtaatgatagcttgtttggattgtaaacccaacattaaattggatatt
attataattcttatagtagggaagttgaagaaaaagtaactggaaggcaa
cctggttggaaactgccagaattccttttacatacgaaggcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_34244878_34245980
seq2: B6Ng01-130P17.g_69_1162 (reverse)

seq1  AAAGCCTTCGTTATGTAAAAGGAA-TCTGGCAGTTTCCAACAAGGTTGGC  49
      |||||||||| ||||||||||||| |||||||||||||||| |||||| |
seq2  AAAGCCTTCG-TATGTAAAAGGAATTCTGGCAGTTTCCAACCAGGTTGCC  49

seq1  TTTCAGTTTTACTTTTTCTTCAAACTTTCCTTACTATAAGAATTTATAAT  99
      || |||  |||||||||||||||   |||| ||||||||||| |||||||
seq2  TTCCAG--TTACTTTTTCTTCAA--CTTCCCTACTATAAGAA-TTATAAT  94

seq1  AAATATCCCAATTTAAATGTTTGTGTTTACAAATCAAACAAGCTTATCAT  149
       ||||| ||||||| |||| ||| ||||||||  ||||||||| ||||||
seq2  -AATAT-CCAATTT-AATG-TTGGGTTTACAATCCAAACAAGC-TATCAT  139

seq1  TACTTACAAGGCCTGCTAGCTGTTTCTGCTAAAATATTCATTAGAGTGAC  199
      ||| |||||||||||||||| ||||||||||||| | |||||||||||||
seq2  TAC-TACAAGGCCTGCTAGCGGTTTCTGCTAAAA-AATCATTAGAGTGAC  187

seq1  TGTAACATTTTAATGTAACA--GTTTTA-GCATTTCCAGATTAAAACAAT  246
      ||||||| ||||| ||||||  |||||| ||||| |||||||||||  ||
seq2  TGTAACA-TTTAAAGTAACAAGGTTTTAGGCATTCCCAGATTAAAAACAT  236

seq1  CTTA-CCAAATTTTAATTAATTGAAAACTTTCCAGTAAAATAAGAAATTT  295
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTACCCAAATTTTAAATAATTGAAAACTTTCCAGTAAAATAAGAAATTT  286

seq1  AGGATACTGAACAGTTAGCTAGTGTCAACAAGCTCCTAAATCAAGAAATA  345
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGATACTGAACAGTTAGCTAGTGTCAACAAGCTCCTAAATC-AGAAATA  335

seq1  TCAAAACTAAAACATTTTAATGTAAAATAGGTCACATCATAGTTTAGCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTAAAACATTTTAATGTAAAATAGGTCACATCATAGTTTAGCAC  385

seq1  TTAGGCAAAATCTACTGAATCCTGTGGTGTGTTTTATTCTGTGTCACGTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAAAATCTACTGAATCCTGTGGTGTGTTTTATTCTGTGTCACGTC  435

seq1  CACTGTCTTCCGTGGAGTCACATCAA-TTATGATCATGTGTTCTAAGGGA  494
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACTGTCTTCCGTGGAGTCACATCAATTTATGATCATGTGTTCTAAGGGA  485

seq1  AAAACAAAGAGAACATGTTATATTCAAAGGTTCCTGGTCACTTGCAGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGAGAACATGTTATATTCAAAGGTTCCTGGTCACTTGCAGTTT  535

seq1  ATGACCTATATTTCTTAACTTACGATATGTCAACATATCTCAGGCAAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTATATTTCTTAACTTACGATATGTCAACATATCTCAGGCAAAAA  585

seq1  TGTTCACTTATGACTCTTGGTTTACAAAGAAAAAGGAGCCAGGCATCCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTTATGACTCTTGGTTTACAAAGAAAAAGGAGCCAGGCATCCTG  635

seq1  GCTCACACCAAGAATCCCAGCATTTGGGAGACTAAGGTAGGAAAATCATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACCAAGAATCCCAGCATTTGGGAGACTAAGGTAGGAAAATCATG  685

seq1  AGCTCAAAGTCAGCCACAAGTACCTTGCAAACTTAAATCCAGCCTGGGTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAGTCAGCCACAAGTACCTTGCAAACTTAAATCCAGCCTGGGTC  735

seq1  ACCTAAGGCTCTGTCTCAAAAGAACTGAAAATAGCTAATTATTTAAGTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGGCTCTGTCTCAAAAGAACTGAAAATAGCTAATTATTTAAGTAA  785

seq1  ATTTAAAACTAGGAAGTAACTGTATTGCTGATCAGTTCTTTACTGGTGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAACTAGGAAGTAACTGTATTGCTGATCAGTTCTTTACTGGTGAG  835

seq1  TCTGGTCACACTGGATGGAGGTTTCTGCAGACAGCTACCTACTATATAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCACACTGGATGGAGGTTTCTGCAGACAGCTACCTACTATATAAA  885

seq1  CTCCATTCCTCCTCCAGGGGCTCAGGAATTCCTAGATGACTTAACTATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCCTCCTCCAGGGGCTCAGGAATTCCTAGATGACTTAACTATAA  935

seq1  GCCTGTCAGGAAGTGGCTAGATGACTCAAGACTGTGAGCCTGCTTCGTAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCAGGAAGTGGCTAGATGACTCAAGACTGTGAGCCTGCTTCGTAG  985

seq1  GAAAGCCAGTTTCATAGAGTGAGACAAGTCGTGGCACTTACCAGCTCTGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAGTTTCATAGAGTGAGACAAGTCGTGGCACTTACCAGCTCTGA  1035

seq1  CACAGGGAAGAGCGAGCTGCCCCCTGCACTTGTTAGAAATCAAGTGTCAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAAGAGCGAGCTGCCCCCTGCACTTGTTAGAAATCAAGTGTCAC  1085

seq1  ATAGAATTC  1103
      |||||||||
seq2  ATAGAATTC  1094