BAC Information

Click to search

BAC

Clone NameB6Ng01-131N12
Chromosome19 (Build37)
Map Location 16,301,449 - 16,302,213
singlet/doubletsinglet
Overlap geneGnaq
Upstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, E030024N20Rik
Downstream geneLOC624438, Gna14, LOC666665, Vps13a, Foxb2, A230083H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131N12.bB6Ng01-131N12.g
ACCDH932798DH932799
length1,214824
definitionDH932798|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N12, 5' end.DH932799|Mus musculus domesticus DNA, BAC clone: B6Ng01-131N12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcagactgaagagaatgataaactttcccatgaatctagaggg
aaaagacactagagaagtaattaaacaatgagaattgggaaaacatcaaa
tactacacaatcacaaaatgacagagatttacacacactttaaaaataac
tcctgatagcaatgatatcaatccccccaattaaaagacaaaaattaaca
gatcagatttaaaggtgatctatttgctccctccaagaaacacatttgcc
atcaaggataaacacaatcttaggttgaaaggatggagaaaggtatccca
agcaaggggaatgagggaaagctagtgtgaagttcgaatacttgaaaaag
tagacattaagccaaaactagtcaaagagacaaagtcacgacatactgat
taagaaacagtctaccaagaggacattatggctctaagcatatatacact
atacacagatgtgcccaattttataaaacaaacatgactagatgtagagt
cacagattaacttcaacccaataatagtggatgacttcagtagtaactca
ttcttaccaatgagccagtgatctcaagacacacacacacacatacagaa
agagagagaaagagacagagacagagagacagagaaacagatatctgagt
taaaataacatcatagagccaacacagacatccatagaacacgccatcca
cacacttgcaaaatctatattctcagcagcccatagacctacctctaaaa
cagatcaaacaaagcatgtctcatctagtgcagtaaatttaaaataattt
cctgtattatatctgattacttgggatgtaaccacaaattcaagcaagag
aaactatacaacatacaaaatgaatggagattggacacacactgtggagt
ggagaaaggaaatttaaaagttcccagaatcaaagaaggtagaagcactc
aaaccaaaacctaggcataaaataaaaccagtcataggagcttataaatg
cctacttcaaagaaaaaaaaatcagagacatctctaataacttatgcacc
tcagtcttagaaaaacagaaaaagcaatctaatagtaacgaatactagat
agggcgagccgatgattgataaaattacccaggatgatagctgaatgttg
ttctggaagaatgcaactagtacatcagtaggactactataattgaggtg
caggagacggtcac
gaattcaatttcaaaagcaattcaattataatcagtttcagatgaagctg
tgtttgactctattactgtattgtaaaacggtatgccaacagtagtgcac
caaagcttatcaaggtaaacaaatgctcacgcactgattctccattcatt
tcactcactcaacagccaaattctgtgctaaatactgtgccaggtttaaa
gaacaaaagctcaacctccatcctctagtgttgctattcttcttatcata
ctaatgtttttccaggtagagcttgcttgcttgcttgcttatttatttat
ttatttatttgcactccagatcttatccccctcttggtccaccctccatt
tatttatttatttatttatttatttatttatttgcactccagatcttatc
cccctcttggtccaccctccatttatttatttatttatttatttatttat
ttatttatttatttgcactccagatcttatccccctcttggtccaccctc
catttatttatttatttatttatttatttatttatttatttatttattta
tttgcgctccagatcttatccccctcttggtccaccctccaactgttcaa
catcccattcctcctcaccgaacccctgtcttcacaaggatgtcctcatg
acccaccatccaccccacgagacccctaaactcccctcaggcctccagtc
tcttgagggttaggtgcatctttttctgactgaactcagacccatcagtc
ccctgcttgtatgtgtgttgggggcctcaaatcaactggtgtatgctacc
tggttagtggtctagtgtttgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_16301449_16302213
seq2: B6Ng01-131N12.g_131_894 (reverse)

seq1  TCTCAAACACTAGACCACTAACCAGGTAGCATACACCAGCTGATTTGAGG  50
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCAAACACTAGACCACTAACCAGGTAGCATACACCAGTTGATTTGAGG  50

seq1  CCCCCAACACACATAC-AGCAGGGGACTGCTGGGTCTGGGTTCAGTCAG-  98
      |||||||||||||||| |||||||||||| |||||||| |||||||||| 
seq2  CCCCCAACACACATACAAGCAGGGGACTGATGGGTCTGAGTTCAGTCAGA  100

seq1  AGAAGATGCACCTAACCCTCAAGAGACTGGAGGCCTGA-GGGAGTTTAGG  147
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAGATGCACCTAACCCTCAAGAGACTGGAGGCCTGAGGGGAGTTTAGG  150

seq1  GGTCTCGTGGGGTGGATGGTGGGTCATGAGGACATCCTTGTGAAGACAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGTGGGGTGGATGGTGGGTCATGAGGACATCCTTGTGAAGACAGG  200

seq1  GGTTCGGTGAGGAGGAATGGGATGTTGAACAGTTGGAGGGTGGACCAAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGTGAGGAGGAATGGGATGTTGAACAGTTGGAGGGTGGACCAAGA  250

seq1  GGGGGATAAGATCTGGAGCGCAAATAAATAAATAAATAAATAAATAAATA  297
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  GGGGGATAAGATCTGGAGCGC----AAATAAATAAATAAATAAATAAATA  296

seq1  AATAAATAAATAAATAAATAAATAAATGGAGGGTGGACCAAGAGGGGGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAATAAATGGAGGGTGGACCAAGAGGGGGAT  346

seq1  AAGATCTGGAGTGCAAATAAATAAATAAATAAATAAATAAATAAATAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGGAGTGCAAATAAATAAATAAATAAATAAATAAATAAATAAAT  396

seq1  AAATAAATGGAGGGTGGACCAAGAGGGGGATAAGATCTGGAGTGCAAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGGAGGGTGGACCAAGAGGGGGATAAGATCTGGAGTGCAAATA  446

seq1  AATAAATAAATAAATAAATAAATAAATAAATGGAGGGTGGACCAAGAGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAATAAATAAATGGAGGGTGGACCAAGAGGG  496

seq1  GGATAAGATCTGGAGTGCAAATAAATAAATAAATAAATAAGCAAGCAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGATCTGGAGTGCAAATAAATAAATAAATAAATAAGCAAGCAAGC  546

seq1  AAGCAAGCTCTACCTGGAAAAACATTAGTATGATAAGAAGAATAGCAACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCTCTACCTGGAAAAACATTAGTATGATAAGAAGAATAGCAACA  596

seq1  CTAGAGGATGGAGGTTGAGCTTTTGTTCTTTAAACCTGGCACAGTATTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGATGGAGGTTGAGCTTTTGTTCTTTAAACCTGGCACAGTATTTA  646

seq1  GCACAGAATTTGGCTGTTGAGTGAGTGAAATGAATGGAGAATCAGTGCGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAATTTGGCTGTTGAGTGAGTGAAATGAATGGAGAATCAGTGCGT  696

seq1  GAGCATTTGTTTACCTTGATAAGCTTTGGTGCACTACTGTTGGCATACCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTGTTTACCTTGATAAGCTTTGGTGCACTACTGTTGGCATACCG  746

seq1  TTTTACAATACAGTAATA  765
      ||||||||||||||||||
seq2  TTTTACAATACAGTAATA  764