BAC Information

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BAC

Clone NameB6Ng01-135H22
Chromosome19 (Build37)
Map Location 35,277,268 - 35,425,816
singlet/doubletdoublet
Overlap genenone
Upstream geneStambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H22.bB6Ng01-135H22.g
ACCDH935515DH935516
length1,0741,128
definitionDH935515|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H22, 5' end.DH935516|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,277,268 - 35,278,355)(35,424,674 - 35,425,816)
sequence
gaattctgtggttgtgtttctttctgtccatcagtttgttttcctttctt
cttatgatgtacaaatctccaaccttcctctctgttccgtttgtaattta
ctcttttttttcccacattataacaataatatttaatgtaaacctctttt
gagtttgttcagcactagctggcactttgtttatgacagctacatgaatc
actgtagaatgtagctattgcaatgatcttgttgtttttaacttggaagt
aagccattgagaaaaggttgtctaatttatcatatttctcccataatact
acttgcaacacggcacactaaattcatagtaactgataggaaagttacat
cacaaatgtatttctgagtgaaggacaaatgtgacctatcaagatgttct
tttttttttttctttcaggattatacaatggtaatagccacattaaaatt
tcattttactgcccccagagacattgcaggaatgtctgctttgtcacatg
tgcatcaatatattgcagagaggagagatgctatgtctaagcttagtgtt
atgatctgtgcacatcaaaatgattagatgcctaacattccccccaaaag
tgagcctgcaatgaccacaggtcttgcactgtgcaggcctggatgggctc
ttatggtgggaagcaagccaaagatgatataaaccccttctgggactatg
cagcccattggaagataaaaggagactagaaggaccttaggccccaggca
ggagtaagtatgatgtagataacctctgcatgggcccacataggcaggcc
ctgatgaagaatgagcaccagatgaccactagtctgtttctatggggtct
tgtcagggagctagcttgagatgatcatcagtcttgtgctgtgcaatttt
agagggcagaccatgcctgagatggcccctgcccagtgccataatgcaca
agcaggcatagtactgctgagaccactccagagatgacccagacactcag
agaccctaagtgccactagaggagcacgtagtgtgaaatgaagagaagag
cacagacgttgtgtgtcgatgaag
gaattcattgttgcatgctcaatgtctaggatgaatcctggaagttcaac
ttagctttatgagtttattgactgaaaaatgaatgaaatgtactcacatt
catataatttgtatttttcctcagtcatatctcaagcactaagaagccaa
acaacatgtgatttctgtatatgtcacaggtgacacaatatctgatattc
aaataatgtattttgtaaatctttgttcaacaaataattacctcctaaga
aaattattgagagaatagttaaaagccacaaatatgcatgcaatcacaaa
gtactagagttctgacctagaaagatgcaaactatgattaaatgagttta
aacattatgaaatcacagatgttgctggaattgagctttgcaatttttgc
aagagttcagtctataatgcaggtggtaatttaccttactgaacaattat
ttttgcttttcaactacaacaaatatagacacctctgttttgttgtatta
gtattcgtacttggccattggtgaagcttacaatccatcctcctgcaaac
ataagtttgcttcagatgcattcaccagcttagatgtcagatagtattac
aatgaagcaaactcttaccgttgaaagtcaatttacctccaggttctttt
ttaaagacaccaatctatgtgcttttgttagcttagactttgttcacagt
gaataaaggatagaaatatgagtatcataatcattttctttctaaactaa
tttatatcctgaaggaagagaaaaatcagttttcatgggtgcaaagttat
tcaaaatcacctattcaaaacccagtttgttattagtgtagatgctatga
ttgaaggtaaggttgaaagatattgttacatagatttcaatcctcaaact
aagaacagggttagaaggaaaattggtccaaggttaaagaaaatgaacct
taggaaaatctgcttaaatctggccccatgcaatgtcgttcagattcagt
acgttcagcactcaagttagaggatgggtttctgggttatgggggtgcag
ctgcaggtcatgaatcctagatctgttcctcttgtttgcagaatccaaga
tggatgtgttcagaagtctgaatttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35277268_35278355
seq2: B6Ng01-135H22.b_50_1123

seq1  GAATTCTGTGGTTGTGTTTCTTTCTGTCCATCAGTTTGTTTTCCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTTGTGTTTCTTTCTGTCCATCAGTTTGTTTTCCTTTCTT  50

seq1  CTTATGATGTACAAATCTCCAACCTTCCTCTCTGTTCCGTTTGTAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATGTACAAATCTCCAACCTTCCTCTCTGTTCCGTTTGTAATTTA  100

seq1  CTCTTTTTTTTCCCACATTATAACAATAATATTTAATGTAAACCTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTTTCCCACATTATAACAATAATATTTAATGTAAACCTCTTTT  150

seq1  GAGTTTGTTCAGCACTAGCTGGCACTTTGTTTATGACAGCTACATGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTCAGCACTAGCTGGCACTTTGTTTATGACAGCTACATGAATC  200

seq1  ACTGTAGAATGTAGCTATTGCAATGATCTTGTTGTTTTTAACTTGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAATGTAGCTATTGCAATGATCTTGTTGTTTTTAACTTGGAAGT  250

seq1  AAGCCATTGAGAAAAGGTTGTCTAATTTATCATATTTCTCCCATAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGAGAAAAGGTTGTCTAATTTATCATATTTCTCCCATAATACT  300

seq1  ACTTGCAACACGGCACACTAAATTCATAGTAACTGATAGGAAAGTTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAACACGGCACACTAAATTCATAGTAACTGATAGGAAAGTTACAT  350

seq1  CACAAATGTATTTCTGAGTGAAGGACAAATGTGACCTATCAAGATGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGTATTTCTGAGTGAAGGACAAATGTGACCTATCAAGATGTTCT  400

seq1  TTTTTTTTTTTCTTTCAGGATTATACAATGGTAATAGCCACATTAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCTTTCAGGATTATACAATGGTAATAGCCACATTAAAATT  450

seq1  TCATTTTACTGCCCCCAGAGACATTGCAGGAATGTCTGCTTTGTCACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTACTGCCCCCAGAGACATTGCAGGAATGTCTGCTTTGTCACATG  500

seq1  TGCATCAATATATTGCAGAGAGGAGAGATGCTATGTCTAAGCTTAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATATATTGCAGAGAGGAGAGATGCTATGTCTAAGCTTAGTGTT  550

seq1  ATGATCTGTGCACATCAAAATGATTAGATGCCTAACATTCCCCCCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTGCACATCAAAATGATTAGATGCCTAACATTCCCCCCAAAAG  600

seq1  TGAGCCTGCAATGACCACAGGTCTTGCACTGTGCAGGCCTGGATGGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGCAATGACCACAGGTCTTGCACTGTGCAGGCCTGGATGGGCTC  650

seq1  TTATGGTGGGAAGCAAGCCAAAGATGATATAAACCCCTTCTGGGACTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTGGGAAGCAAGCCAAAGATGATATAAACCCCTTCTGGGACTATG  700

seq1  CAGCCCATTGGAAGATAAAAGGAGACTAGAAGGACCTTAGGCCCCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATTGGAAGATAAAAGGAGACTAGAAGGACCTTAGGCCCCAGGCA  750

seq1  GGAGTAAGTATGATGTAGATAACCTCTGCATGGGCCCACATAGGCAGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGTATGATGTAGATAACCTCTGCATGGGCCCACATAGGCAGGCC  800

seq1  CTGATGAAGAATGAGCACCAGATGACCACTAGTCTGTTTCTATGGGGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAAGAATGAGCACCAGATGACCACTAGTCTGTTTCTATGGGGTCT  850

seq1  TGTCAGGGAGCTAGCTTGAGATGATCATCAGTCTTGTGCTGTGCAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGAGCTAGCTTGAGATGATCATCAGTCTTGTGCTGTGCAATTTT  900

seq1  AGAGGGGCAGACCATGCCTGAGATGGCCCCTGCCCAGTGCCATAATGCAC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGA-GGGCAGACCATGCCTGAGATGGCCCCTGCCCAGTGCCATAATGCAC  949

seq1  AAGCAGGGCATAGTACTGCTGAGACCACTCCAGAGATGACCCCAGACACT  1000
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGCA-GGCATAGTACTGCTGAGACCACTCCAGAGATGA-CCCAGACACT  997

seq1  CAGAGACCCTAAGGTGCCACTAAGAGGAGCACGTAAGTGTTGAAAAATGG  1050
      |||||||||||| |||||||| |||||||||||| |||| |||||    |
seq2  CAGAGACCCTAA-GTGCCACT-AGAGGAGCACGT-AGTG-TGAAA---TG  1040

seq1  AAGAGAAAGAGCAACAGAAGGTTGTGGGTACGATGAAG  1088
      ||||| |||||| |||| | |||||| || ||||||||
seq2  AAGAG-AAGAGC-ACAG-ACGTTGTGTGT-CGATGAAG  1074

seq1: chr19_35424674_35425816
seq2: B6Ng01-135H22.g_69_1196 (reverse)

seq1  ATGAAATTCAAACATACTG-ACACATTCCATTTTGTGGATCTGCAAAC-A  48
      |||||||||| || | ||| ||||| ||||| ||| |  ||||||||| |
seq2  ATGAAATTCAGAC-TTCTGAACACA-TCCATCTTG-GATTCTGCAAACAA  47

seq1  GAGGAACAGATGCTAGGATGTCATGACCTGCAGCTGCCACCCCAATAACC  98
      ||||||||||| ||||||| |||||||||||||||| |||||| ||||||
seq2  GAGGAACAGAT-CTAGGAT-TCATGACCTGCAGCTG-CACCCCCATAACC  94

seq1  CAGATACCCATCCTCTAACTTGAAGTGCTGGAACGTAACTGAATTCTGGA  148
      |||| ||||||||||||||||| |||||| |||||| |||||| |||| |
seq2  CAGAAACCCATCCTCTAACTTG-AGTGCT-GAACGT-ACTGAA-TCTGAA  140

seq1  CGGACATTTGCATGGGGCCAGATTTAAGGCAGGATTTTCCTAAGGTTCAT  198
      | |||| |||||||||||||||||||| ||| ||||||||||||||||||
seq2  C-GACA-TTGCATGGGGCCAGATTTAA-GCA-GATTTTCCTAAGGTTCAT  186

seq1  TTTCTTTAACCTTGGACCAATTTTTCCTTCTAACCCTGTTCTTAGTTTGA  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTCTTTAACCTTGGACCAA-TTTTCCTTCTAACCCTGTTCTTAGTTTGA  235

seq1  GGATTGAAATCTATGTAACAAATATCTTTCAAACCTTACCTTCAATCATA  298
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GGATTGAAATCTATGTAAC-AATATCTTTC-AACCTTACCTTCAATCATA  283

seq1  GCATCTACACTAATAACAAACTGGGTTTTGAATAGGTGATTTTGAATAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACACTAATAACAAACTGGGTTTTGAATAGGTGATTTTGAATAAC  333

seq1  TTTGCACCCATGAAAACTGATTTTTCTCTTCCTTCAGGATATAAATTAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCCATGAAAACTGATTTTTCTCTTCCTTCAGGATATAAATTAGT  383

seq1  TTAGAAAGAAAATGATTATGATACTCATATTTCTATCCTTTATTCACTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGAAAATGATTATGATACTCATATTTCTATCCTTTATTCACTGT  433

seq1  GAACAAAGTCTAAGCTAACAAAAGCACATAGATTGGTGTCTTTAAAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGTCTAAGCTAACAAAAGCACATAGATTGGTGTCTTTAAAAAAG  483

seq1  AACCTGGAGGTAAATTGACTTTCAACGGTAAGAGTTTGCTTCATTGTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGAGGTAAATTGACTTTCAACGGTAAGAGTTTGCTTCATTGTAAT  533

seq1  ACTATCTGACATCTAAGCTGGTGAATGCATCTGAAGCAAACTTATGTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGACATCTAAGCTGGTGAATGCATCTGAAGCAAACTTATGTTTG  583

seq1  CAGGAGGATGGATTGTAAGCTTCACCAATGGCCAAGTACGAATACTAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATGGATTGTAAGCTTCACCAATGGCCAAGTACGAATACTAATA  633

seq1  CAACAAAACAGAGGTGTCTATATTTGTTGTAGTTGAAAAGCAAAAATAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACAGAGGTGTCTATATTTGTTGTAGTTGAAAAGCAAAAATAAT  683

seq1  TGTTCAGTAAGGTAAATTACCACCTGCATTATAGACTGAACTCTTGCAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTAAGGTAAATTACCACCTGCATTATAGACTGAACTCTTGCAAA  733

seq1  AATTGCAAAGCTCAATTCCAGCAACATCTGTGATTTCATAATGTTTAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAAAGCTCAATTCCAGCAACATCTGTGATTTCATAATGTTTAAAC  783

seq1  TCATTTAATCATAGTTTGCATCTTTCTAGGTCAGAACTCTAGTACTTTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAATCATAGTTTGCATCTTTCTAGGTCAGAACTCTAGTACTTTGT  833

seq1  GATTGCATGCATATTTGTGGCTTTTAACTATTCTCTCAATAATTTTCTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATGCATATTTGTGGCTTTTAACTATTCTCTCAATAATTTTCTTA  883

seq1  GGAGGTAATTATTTGTTGAACAAAGATTTACAAAATACATTATTTGAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAATTATTTGTTGAACAAAGATTTACAAAATACATTATTTGAATA  933

seq1  TCAGATATTGTGTCACCTGTGACATATACAGAAATCACATGTTGTTTGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATTGTGTCACCTGTGACATATACAGAAATCACATGTTGTTTGGC  983

seq1  TTCTTAGTGCTTGAGATATGACTGAGGAAAAATACAAATTATATGAATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTGCTTGAGATATGACTGAGGAAAAATACAAATTATATGAATGT  1033

seq1  GAGTACATTTCATTCATTTTTCAGTCAATAAACTCATAAAGCTAAGTTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATTTCATTCATTTTTCAGTCAATAAACTCATAAAGCTAAGTTGA  1083

seq1  ACTTCCAGGATTCATCCTAGACATTGAGCATGCAACAATGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGATTCATCCTAGACATTGAGCATGCAACAATGAATTC  1128