BAC Information

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BAC

Clone NameB6Ng01-137D24
Chromosome19 (Build37)
Map Location 43,017,430 - 43,049,042
singlet/doubletdoublet
Overlap geneLOC545291
Upstream geneZdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137D24.bB6Ng01-137D24.g
ACCDH936815DH936816
length1,1811,089
definitionDH936815|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D24, 5' end.DH936816|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,047,856 - 43,049,042)(43,017,430 - 43,018,528)
sequence
gaattcttgatactccaaaatatgagaatcactaccatgtacaggcagag
caatattttattgatgaagaaatagatgtgtacaagtgttaagataacaa
gccataaccaggaaaagggcactcatagttattaagtgactacactatac
tctccagtgcccttgtttcctgctaatcctcacaacgttctttgtgatgc
tggaataagtgctattctctccatatgaaatgatccaaggaagtgaacct
acgcaaatccacatagctaatgacagtaccaggattcaaaacagaaatct
attttactcctgaatccagtggatttctaccctgtggtgccattttcctg
aattttcattttcaactaaggatgttataaacagtcaagaatataaaata
taagccttttcacttgaggcccacagtaattgctctcactcacactgcct
cttaccacagcttcagctcctggaaaatttccttcctctatgaaattcat
aatcatatcctgatgtgtatttcttccttcctcagccaggacaaatccta
tcgagtcagttaaagcctctgtgcttgaatccaagtctgtgtgacctcct
cagcacactgtgggttgccaagccgtgcctatcgtaatagtcctccagcc
ggccccttgctcttctagccagagccttccagatgtatttcaacatttcc
cctcccaacccgtgttctcccagctttattattctcttacatgtgcttct
ttcttgttttagacactgtcttacagtctccactctttcagtcccccctg
acccccactggagcaaattggctttatctcgggggccagtttcacgtagc
aaatgcttggtgatctgtcttgagaaaggttctcagccagttggcaggca
ggcaaggtggtactgtattgtggtctactccagcatctgccgtggacttc
cggaaaagttagcagcacaacaaagactaccaatctgcctctgcatggac
aagagtaaaaggacttctgggagtagacctggatttgatcctgcttctct
aatgaacttcgtgggtagtcttggagccagtttcattgtcaagaagagat
agtgccaccgcttaccctagtgatgctgctagaaaggagccagtttctgg
ggatgcagccaatagacttcgactccatgaa
gaattcctcggcctcctctctccaagacacagccctcctgccaggttgtg
tgattctgtctggcacagaacacactggaacaaaagtcagtagcacagga
tgagatgcaggaaaggcactgagggtaatggaaaggatcctatccttcaa
aggaagggaaacaaaagacatggtggcagtgacgtcacacaggatcctag
tttagaagagcaaaccatggtttcagggtttccaaatccccatttaattt
tagtttgcagagagctaatagattcacatggctcaaaataaaggaaaagc
gtatatggtgagaagtttcccttctacctctcgctttgtgatctcatttc
tcccttttaatgcaagaaatgttggcagtttttgtattttggtgatttta
aatacacatgcaagcagacacttgtgacactctgtgactagtcccacctc
tgattgaattagtacacaagttcttcctatcttgtgaaattacattagca
ttctattacatgaatatactatggatttatttagcaaatcctctattacc
aaaaccctttagttaaagtctgttgttacaaacaaagctgaaccaagtaa
cactgcaatgcatgccagtatgagttctcactctcacagcccagggtgag
tcagttggtgttctcagcttttagaaacatgagtcagaattggaatcagc
agcagggtagcacttctccaagattgaattttgattgtagggtggaaatg
gtttaaactgtttggaatctggacctcttttaaaggtataactggtgaga
tatgatggtggcttatcaaatagtaggatatgagcaagttctatatacag
agtaaacaaaggaaactataaataatgaaatataatgaatgactatgaag
acacagaaaagaccaaaaattaactgcatcaacacatttaaatattaaca
aaccaacaacaaaaacaagctagctgaatgtattacgaaacagaatctat
gtctgtgtcatagaaatctatcttatgtttaagatattgcagcaccttta
agtgacgatgaaaagaatttccgaattcaatcagatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43047856_43049042
seq2: B6Ng01-137D24.b_47_1227 (reverse)

seq1  TTCATGGAGTACAGGCAGTCTATTGGGCTTTCATCCCCAAAGAAAACTGG  50
      ||||||||||    | ||||||||||   | ||||||||    |||||||
seq2  TTCATGGAGT---CGAAGTCTATTGG--CTGCATCCCCA---GAAACTGG  42

seq1  CTTCCTTCTAAGCAGCCATCAACTAGGGGTAGCGGTGGCACTATCTCTTT  100
      || | |||| ||||| |||| |||||||  ||||||||||||||||||| 
seq2  CTCCTTTCT-AGCAG-CATC-ACTAGGGTAAGCGGTGGCACTATCTCTT-  88

seq1  CTTTGACAAATGAAACT-GCT-CAAGACTACCCACGAAGTTCATTAGAG-  147
        ||||| ||||||||| ||| ||||||||||||||||||||||||||| 
seq2  -CTTGAC-AATGAAACTGGCTCCAAGACTACCCACGAAGTTCATTAGAGA  136

seq1  AGCAGGATCAAATCCAGTTCTACT-CCAG-AGTCCTTTTACTCTTGTCCA  195
      ||||||||||||||||| |||||| |||| ||||||||||||||||||||
seq2  AGCAGGATCAAATCCAGGTCTACTCCCAGAAGTCCTTTTACTCTTGTCCA  186

seq1  TGCAGGGGCAGATTGGTAGTCTTTGTTGTGCTGCT-ACTTTTCCGG-AGT  243
      ||||| ||||||||||||||||||||||||||||| |||||||||| |||
seq2  TGCAGAGGCAGATTGGTAGTCTTTGTTGTGCTGCTAACTTTTCCGGAAGT  236

seq1  CCACGGCAGATGCTGGAGTAGACCACAATACAGTACCACC-TGCCTGCCT  292
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCACGGCAGATGCTGGAGTAGACCACAATACAGTACCACCTTGCCTGCCT  286

seq1  GCCAACTGGCTGAGAACCTTTCTCAAGACAGATCACCAAGCATTTGCTAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGGCTGAGAACCTTTCTCAAGACAGATCACCAAGCATTTGCTAC  336

seq1  CTGAAACTGGCCCCCGAGATAAAGCCAATTTGCTCCAGTGGGGGTCAGGG  392
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTGGCCCCCGAGATAAAGCCAATTTGCTCCAGTGGGGGTCAGGG  386

seq1  GGGACTGAAAGAGTGGAGACTGTAAGACAGTGTCTAAAACAAGAAAGAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGAAAGAGTGGAGACTGTAAGACAGTGTCTAAAACAAGAAAGAAG  436

seq1  CACATGTAAGAGAATAATAAAGCTGGGAGAACACGGGTTGGGAGGGGAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAAGAGAATAATAAAGCTGGGAGAACACGGGTTGGGAGGGGAAA  486

seq1  TGTTGAAATACATCTGGAAGGCTCTGGCTAGAAGAGCAAGGGGCCGGCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAATACATCTGGAAGGCTCTGGCTAGAAGAGCAAGGGGCCGGCTG  536

seq1  GAGGACTATTACGATAGGCACGGCTTGGCAACCCACAGTGTGCTGAGGAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTATTACGATAGGCACGGCTTGGCAACCCACAGTGTGCTGAGGAG  586

seq1  GTCACACAGACTTGGATTCAAGCACAGAGGCTTTAACTGACTCGATAGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACAGACTTGGATTCAAGCACAGAGGCTTTAACTGACTCGATAGGA  636

seq1  TTTGTCCTGGCTGAGGAAGGAAGAAATACACATCAGGATATGATTATGAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTGGCTGAGGAAGGAAGAAATACACATCAGGATATGATTATGAA  686

seq1  TTTCATAGAGGAAGGAAATTTTCCAGGAGCTGAAGCTGTGGTAAGAGGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGAGGAAGGAAATTTTCCAGGAGCTGAAGCTGTGGTAAGAGGCA  736

seq1  GTGTGAGTGAGAGCAATTACTGTGGGCCTCAAGTGAAAAGGCTTATATTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGAGAGCAATTACTGTGGGCCTCAAGTGAAAAGGCTTATATTT  786

seq1  TATATTCTTGACTGTTTATAACATCCTTAGTTGAAAATGAAAATTCAGGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTTGACTGTTTATAACATCCTTAGTTGAAAATGAAAATTCAGGA  836

seq1  AAATGGCACCACAGGGTAGAAATCCACTGGATTCAGGAGTAAAATAGATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCACCACAGGGTAGAAATCCACTGGATTCAGGAGTAAAATAGATT  886

seq1  TCTGTTTTGAATCCTGGTACTGTCATTAGCTATGTGGATTTGCGTAGGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGAATCCTGGTACTGTCATTAGCTATGTGGATTTGCGTAGGTT  936

seq1  CACTTCCTTGGATCATTTCATATGGAGAGAATAGCACTTATTCCAGCATC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTGGATCATTTCATATGGAGAGAATAGCACTTATTCCAGCATC  986

seq1  ACAAAGAACGTTGTGAGGATTAGCAGGAAACAAGGGCACTGGAGAGTATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACGTTGTGAGGATTAGCAGGAAACAAGGGCACTGGAGAGTATA  1036

seq1  GTGTAGTCACTTAATAACTATGAGTGCCCTTTTCCTGGTTATGGCTTGTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTCACTTAATAACTATGAGTGCCCTTTTCCTGGTTATGGCTTGTT  1086

seq1  ATCTTAACACTTGTACACATCTATTTCTTCATCAATAAAATATTGCTCTG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACACTTGTACACATCTATTTCTTCATCAATAAAATATTGCTCTG  1136

seq1  CCTGTACATGGTAGTGATTCTCATATTTTGGAGTATCAAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACATGGTAGTGATTCTCATATTTTGGAGTATCAAGAATTC  1181

seq1: chr19_43017430_43018528
seq2: B6Ng01-137D24.g_66_1154

seq1  GAATTCCTCGGCCTCCTCTCTCCAAGACACAGCCCTCCTGCCAGGTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGCCTCCTCTCTCCAAGACACAGCCCTCCTGCCAGGTTGTG  50

seq1  TGATTCTGTCTGGCACAGAACACACTGGAACAAAAGTCAGTAGCACAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGTCTGGCACAGAACACACTGGAACAAAAGTCAGTAGCACAGGA  100

seq1  TGAGATGCAGGAAAGGCACTGAGGGTAATGGAAAGGATCCTATCCTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCAGGAAAGGCACTGAGGGTAATGGAAAGGATCCTATCCTTCAA  150

seq1  AGGAAGGGAAACAAAAGACATGGTGGCAGTGACGTCACACAGGATCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAAACAAAAGACATGGTGGCAGTGACGTCACACAGGATCCTAG  200

seq1  TTTAGAAGAGCAAACCATGGTTTCAGGGTTTCCAAATCCCCATTTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGAGCAAACCATGGTTTCAGGGTTTCCAAATCCCCATTTAATTT  250

seq1  TAGTTTGCAGAGAGCTAATAGATTCACATGGCTCAAAATAAAGGAAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCAGAGAGCTAATAGATTCACATGGCTCAAAATAAAGGAAAAGC  300

seq1  GTATATGGTGAGAAGTTTCCCTTCTACCTCTCGCTTTGTGATCTCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGTGAGAAGTTTCCCTTCTACCTCTCGCTTTGTGATCTCATTTC  350

seq1  TCCCTTTTAATGCAAGAAATGTTGGCAGTTTTTGTATTTTGGTGATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTAATGCAAGAAATGTTGGCAGTTTTTGTATTTTGGTGATTTTA  400

seq1  AATACACATGCAAGCAGACACTTGTGACACTCTGTGACTAGTCCCACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACATGCAAGCAGACACTTGTGACACTCTGTGACTAGTCCCACCTC  450

seq1  TGATTGAATTAGTACACAAGTTCTTCCTATCTTGTGAAATTACATTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAATTAGTACACAAGTTCTTCCTATCTTGTGAAATTACATTAGCA  500

seq1  TTCTATTACATGAATATACTATGGATTTATTTAGCAAATCCTCTATTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTACATGAATATACTATGGATTTATTTAGCAAATCCTCTATTACC  550

seq1  AAAACCCTTTAGTTAAAGTCTGTTGTTACAAACAAAGCTGAACCAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTTTAGTTAAAGTCTGTTGTTACAAACAAAGCTGAACCAAGTAA  600

seq1  CACTGCAATGCATGCCAGTATGAGTTCTCACTCTCACAGCCCAGGGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAATGCATGCCAGTATGAGTTCTCACTCTCACAGCCCAGGGTGAG  650

seq1  TCAGTTGGTGTTCTCAGCTTTTAGAAACATGAGTCAGAATTGGAATCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGTGTTCTCAGCTTTTAGAAACATGAGTCAGAATTGGAATCAGC  700

seq1  AGCAGGGTAGCACTTCTCCAAGATTGAATTTTGATTGTAGGGTGGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTAGCACTTCTCCAAGATTGAATTTTGATTGTAGGGTGGAAATG  750

seq1  GTTTAAACTGTTTGGAATCTGGACCTCTTTTAAAGGTATAACTGGTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACTGTTTGGAATCTGGACCTCTTTTAAAGGTATAACTGGTGAGA  800

seq1  TATGATGGTGGCTTATCAAATAGTAGGATATGAGCAAGTTCTATATACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGGTGGCTTATCAAATAGTAGGATATGAGCAAGTTCTATATACAG  850

seq1  AGTAAACAAAGGAAACTATAAATAATGAAATATAATGAATGACTATGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAAAGGAAACTATAAATAATGAAATATAATGAATGACTATGAAG  900

seq1  ACACAGAAAAAGACCAAAAAATTAACTGCAATCAACACATTTAAATATTA  950
      |||||| |||||||| ||||||||||||| ||||||||||||||||||||
seq2  ACACAG-AAAAGACC-AAAAATTAACTGC-ATCAACACATTTAAATATTA  947

seq1  ACAAACCAACAACAAAAACAAGCTAGCTGAATGTATTACGAAACAGAATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAACAACAAAAACAAGCTAGCTGAATGTATTACGAAACAGAATC  997

seq1  TATCTTTCTGTTGTCTATTAGAAATCTATCTTATGTTTAAAGATA-TGCA  1049
      ||  | |||| ||||   |||||||||||||||||||| |||||| ||||
seq2  TA--TGTCTG-TGTC--ATAGAAATCTATCTTATGTTT-AAGATATTGCA  1041

seq1  GCACCTTAAAGTGAACGGATGAAAAGAATATCCCAAATCAATCAGATCAG  1099
      ||||||| ||||||   |||||||||||| ||| || |||||||||||||
seq2  GCACCTTTAAGTGA--CGATGAAAAGAATTTCCGAATTCAATCAGATCAG  1089